Clone BO06465 Report

Search the DGRC for BO06465

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG7168-RA
Protein status:BO06465.pep: validated full length
Sequenced Size:733

Clone Sequence Records

BO06465.3prime Sequence

731 bp (730 high quality bases) assembled on 2005-12-03

> BO06465.3prime
ATGGTCTAGAAAGCTTGCGTGTATTCCGTCGACAATATTGCGAATGCGCC
GCGTCTTGGACTCGGCCAACGCGTCCTCCAGCGTTTTGATCATGTGCACC
AGACTGCAGACATCCGTCTGCACTAGCAAATCCTTTCGATGCAGCCGCTC
GTCCTCCTGCATGGCCTTCAGCTCCTGTTCGCTGCGCCCGGAGATGTCCA
CCGCCAGCAGCTCTCGGTTTTCATTCTTCGGTTCGGTGTGCAGATATAGC
TTCATAGTCACCACCACCTGACACTGATCCAGCAGGCTCCGCGACGCGGT
GCGCACCTCCAGTCGCCAGTCCAGGTTGACCAGCCGATAGGCACGTATGT
TGGCCGACTTGATTGAGCCCTCCACAAAGTTTCGTTTGCTGGTGACGAAC
TGCTCGAGAACTTCTATCACATCGTCGCCGAGTTCGGGGAATGTCTGGCG
CAGTATGGCCTCCATGTCGACGGAACTGCTCCCCACTCGGGTGGTCACGC
TGATGAGCAGGGATATCAGCGCCTCCACCGCCTGCTGCACTGCCTCAGGA
CTGCCCAAATCGGAGGACTTTTTGGCTAGCATCTCGTAACGGCTGGGATT
GGGTCCATTTATTAGGTAATCAAAGGCGGACTTGCACAGCTCCACCACAG
CGCTGGCGGGTTTTTGGAGCAGGCTCAAATGATTGCGCTGTTGTTGAGTT
AAGCGCAGAGATGACATGTCGACTGATAACT

BO06465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-PA 702 CG7168-RA 1..699 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 1034 CG7168-RA 259..957 717..19 3495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18224979..18225677 19..717 3495 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:10:27 has no hits.

BO06465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:22 Download gff for BO06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 16..717 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:20 Download gff for BO06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 16..717 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:17 Download gff for BO06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..957 19..717 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:40 Download gff for BO06465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..957 19..717 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:40 Download gff for BO06465.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18224979..18225677 19..717 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:17 Download gff for BO06465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14050701..14051399 19..717 100   Plus

BO06465.5prime Sequence

731 bp (730 high quality bases) assembled on 2005-12-03

> BO06465.5prime
GAAGTTATCAGTCGACATGTCATCTCTGCGCTTAACTCAACAACAGCGCA
ATCATTTGAGCCTGCTCCAAAAACCCGCCAGCGCTGTGGTGGAGCTGTGC
AAGTCCGCCTTTGATTACCTAATAAATGGACCCAATCCCAGCCGTTACGA
GATGCTAGCCAAAAAGTCCTCCGATTTGGGCAGTCCTGAGGCAGTGCAGC
AGGCGGTGGAGGCGCTGATATCCCTGCTCATCAGCGTGACCACCCGAGTG
GGGAGCAGTTCCGTCGACATGGAGGCCATACTGCGCCAGACATTCCCCGA
ACTCGGCGACGATGTGATAGAAGTTCTCGAGCAGTTCGTCACCAGCAAAC
GAAACTTTGTGGAGGGCTCAATCAAGTCGGCCAACATACGTGCCTATCGG
CTGGTCAACCTGGACTGGCGACTGGAGGTGCGCACCGCGTCGCGGAGCCT
GCTGGATCAGTGTCAGGTGGTGGTGACTATGAAGCTATATCTGCACACCG
AACCGAAGAATGAAAACCGAGAGCTGCTGGCGGTGGACATCTCCGGGCGC
AGCGAACAGGAGCTGAAGGCCATGCAGGAGGACGAGCGGCTGCATCGAAA
GGATTTGCTAGTGCAGACGGATGTCTGCAGTCTGGTGCACATGATCAAAA
CGCTGGAGGACGCGTTGGCCGAGTCCAAGACGCGGCGCATTCGCAATATT
GTCGACGGAATACACGCAAGCTTTCTAGACC

BO06465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-PA 702 CG7168-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 1034 CG7168-RA 259..957 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18224979..18225677 715..17 3495 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:26:22 has no hits.

BO06465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:23 Download gff for BO06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 17..718 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:21 Download gff for BO06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-PA 1..702 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:27 Download gff for BO06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..957 17..715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:45 Download gff for BO06465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..957 17..715 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:45 Download gff for BO06465.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18224979..18225677 17..715 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:27 Download gff for BO06465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14050701..14051399 17..715 100   Minus

BO06465.complete Sequence

733 bp (733 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630411

> BO06465.complete
GAAGTTATCAGTCGACATGTCATCTCTGCGCTTAACTCAACAACAGCGCA
ATCATTTGAGCCTGCTCCAAAAACCCGCCAGCGCTGTGGTGGAGCTGTGC
AAGTCCGCCTTTGATTACCTAATAAATGGACCCAATCCCAGCCGTTACGA
GATGCTAGCCAAAAAGTCCTCCGATTTGGGCAGTCCTGAGGCAGTGCAGC
AGGCGGTGGAGGCGCTGATATCCCTGCTCATCAGCGTGACCACCCGAGTG
GGGAGCAGTTCCGTCGACATGGAGGCCATACTGCGCCAGACATTCCCCGA
ACTCGGCGACGATGTGATAGAAGTTCTCGAGCAGTTCGTCACCAGCAAAC
GAAACTTTGTGGAGGGCTCAATCAAGTCGGCCAACATACGTGCCTATCGG
CTGGTCAACCTGGACTGGCGACTGGAGGTGCGCACCGCGTCGCGGAGCCT
GCTGGATCAGTGTCAGGTGGTGGTGACTATGAAGCTATATCTGCACACCG
AACCGAAGAATGAAAACCGAGAGCTGCTGGCGGTGGACATCTCCGGGCGC
AGCGAACAGGAGCTGAAGGCCATGCAGGAGGACGAGCGGCTGCATCGAAA
GGATTTGCTAGTGCAGACGGATGTCTGCAGTCTGGTGCACATGATCAAAA
CGCTGGAGGACGCGTTGGCCGAGTCCAAGACGCGGCGCATTCGCAATATT
GTCGACGGAATACACGCAAGCTTTCTAGACCAT

BO06465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 702 CG7168-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-RA 1034 CG7168-RA 259..957 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18224979..18225677 715..17 3495 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:32:45 has no hits.

BO06465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:23 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 1..702 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:17 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 204..902 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:18 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..957 17..717 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:23 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 204..902 17..715 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:53 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7168-RA 259..957 17..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:53 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18224976..18225677 17..717 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:18 Download gff for BO06465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14050698..14051399 17..717 99   Minus

BO06465.pep Sequence

Translation from 16 to 733

> BO06465.pep
MSSLRLTQQQRNHLSLLQKPASAVVELCKSAFDYLINGPNPSRYEMLAKK
SSDLGSPEAVQQAVEALISLLISVTTRVGSSSVDMEAILRQTFPELGDDV
IEVLEQFVTSKRNFVEGSIKSANIRAYRLVNLDWRLEVRTASRSLLDQCQ
VVVTMKLYLHTEPKNENRELLAVDISGRSEQELKAMQEDERLHRKDLLVQ
TDVCSLVHMIKTLEDALAESKTRRIRNIVDGIHASFLDH

BO06465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7168-PA 233 CG7168-PA 1..233 1..233 1149 100 Plus