Clone Sequence Records
BO06468.3prime Sequence
590 bp (589 high quality bases) assembled on 2005-12-03
> BO06468.3prime
ATGGTCTAGAAAGCTTGCACGACTTTGGCTTTTCGAATGTTGAATTAACC
ACTGCAGCGTGATGTCAATGTTGTCCTTCTCCTTGCAGGAAATACTATAA
CAGCAGATTTCACGGTCCTGTATGCTCGATAGATTCATTCGTTCGATGAG
TCCGGTTTCATCGAGAGCGCCTGGAAGATCTCGTTTATTGCCCAGTACGA
GAACTGGAATGCCGGCGAGCTGCGGTTTGTCCAACAGTGAGTGCAGCTCG
TTCCTCGAGGCCTCTAATTTGTCCAGATCGGCTGCGTCCACCATGTAGAC
AATCGCATTAACGCCGCGACAATAGCGCTCCCACATGGATCGGAATCGAG
GTTGGCCTCCGATGTCCCACACCTTGATAGTCACATTGCCTCTGGTGATC
TTGCGCATGTTGAATCCAACTGTGGGTATCATGTCCTCAGCGAATTGGCC
GGATGCAATAACATTGACGAACGTCGTCTTCCCGGAGAACTGCAGCCCCA
CTAGCGTGAGTTCCATCTCCTCTTTCCAGAAGATGCTCTTGAACCACTCG
AGGATCCTGTTGATGAGGGCCAACATGTCGACTGATAACT
BO06468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7891-PA | 561 | CG7891-RA | 1..558 | 576..19 | 2765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gie-RC | 1901 | CG7891-RC | 116..673 | 576..19 | 2775 | 99.8 | Minus |
Gie-RB | 1241 | CG7891-RB | 116..673 | 576..19 | 2775 | 99.8 | Minus |
Gie-RA | 916 | CG7891-RA | 116..673 | 576..19 | 2775 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8128262..8128424 | 298..136 | 800 | 99.4 | Minus |
3R | 32079331 | 3R | 8128041..8128195 | 453..299 | 775 | 100 | Minus |
3R | 32079331 | 3R | 8126720..8126842 | 576..454 | 615 | 100 | Minus |
3R | 32079331 | 3R | 8128490..8128607 | 136..19 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:00:59 has no hits.
BO06468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:29 Download gff for
BO06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:28 Download gff for
BO06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:50 Download gff for
BO06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gie-RA | 112..673 | 19..584 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:22 Download gff for
BO06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gie-RA | 112..673 | 19..584 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:22 Download gff for
BO06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8126716..8126842 | 454..584 | 96 | -> | Minus |
3R | 8128041..8128195 | 299..453 | 100 | -> | Minus |
3R | 8128262..8128423 | 137..298 | 99 | -> | Minus |
3R | 8128490..8128607 | 19..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:50 Download gff for
BO06468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3952438..3952564 | 454..584 | 96 | -> | Minus |
arm_3R | 3953763..3953917 | 299..453 | 100 | -> | Minus |
arm_3R | 3953984..3954145 | 137..298 | 99 | -> | Minus |
arm_3R | 3954212..3954329 | 19..136 | 100 | | Minus |
BO06468.5prime Sequence
590 bp (589 high quality bases) assembled on 2005-12-03
> BO06468.5prime
GAAGTTATCAGTCGACATGTTGGCCCTCATCAACAGGATCCTCGAGTGGT
TCAAGAGCATCTTCTGGAAAGAGGAGATGGAACTCACGCTAGTGGGGCTG
CAGTTCTCCGGGAAGACGACGTTCGTCAATGTTATTGCATCCGGCCAATT
CGCTGAGGACATGATACCCACAGTTGGATTCAACATGCGCAAGATCACCA
GAGGCAATGTGACTATCAAGGTGTGGGACATCGGAGGCCAACCTCGATTC
CGATCCATGTGGGAGCGCTATTGTCGCGGCGTTAATGCGATTGTCTACAT
GGTGGACGCAGCCGATCTGGACAAATTAGAGGCCTCGAGGAACGAGCTGC
ACTCACTGTTGGACAAACCGCAGCTCGCCGGCATTCCAGTTCTCGTACTG
GGCAATAAACGAGATCTTCCAGGCGCTCTCGATGAAACCGGACTCATCGA
ACGAATGAATCTATCGAGCATACAGGACCGTGAAATCTGCTGTTATAGTA
TTTCCTGCAAGGAGAAGGACAACATTGACATCACGCTGCAGTGGTTAATT
CAACATTCGAAAAGCCAAAGTCGTGCAAGCTTTCTAGACC
BO06468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7891-PA | 561 | CG7891-RA | 1..558 | 17..574 | 2765 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gie-RC | 1901 | CG7891-RC | 116..673 | 17..574 | 2775 | 99.8 | Plus |
Gie-RB | 1241 | CG7891-RB | 116..673 | 17..574 | 2775 | 99.8 | Plus |
Gie-RA | 916 | CG7891-RA | 116..673 | 17..574 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8128262..8128424 | 295..457 | 800 | 99.4 | Plus |
3R | 32079331 | 3R | 8128041..8128195 | 140..294 | 775 | 100 | Plus |
3R | 32079331 | 3R | 8126720..8126842 | 17..139 | 615 | 100 | Plus |
3R | 32079331 | 3R | 8128490..8128607 | 457..574 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:35:52 has no hits.
BO06468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:30 Download gff for
BO06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:30 Download gff for
BO06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:59:07 Download gff for
BO06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gie-RA | 112..673 | 9..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:33 Download gff for
BO06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gie-RA | 112..673 | 9..574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:33 Download gff for
BO06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8128490..8128607 | 457..574 | 100 | | Plus |
3R | 8128262..8128423 | 295..456 | 99 | -> | Plus |
3R | 8126716..8126842 | 9..139 | 96 | -> | Plus |
3R | 8128041..8128195 | 140..294 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:59:07 Download gff for
BO06468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3952438..3952564 | 9..139 | 96 | -> | Plus |
arm_3R | 3953763..3953917 | 140..294 | 100 | -> | Plus |
arm_3R | 3953984..3954145 | 295..456 | 99 | -> | Plus |
arm_3R | 3954212..3954329 | 457..574 | 100 | | Plus |
BO06468.complete Sequence
592 bp assembled on 2007-10-17
GenBank Submission: FJ630412
> BO06468.complete
GAAGTTATCAGTCGACATGTTGGCCCTCATCAACAGGATCCTCGAGTGGT
TCAAGAGCATCTTCTGGAAAGAGGAGATGGAACTCACGCTAGTGGGGCTG
CAGTTCTCCGGGAAGACGACGTTCGTCAATGTTATTGCATCCGGCCAATT
CGCTGAGGACATGATACCCACAGTTGGATTCAACATGCGCAAGATCACCA
GAGGCAATGTGACTATCAAGGTGTGGGACATCGGAGGCCAACCTCGATTC
CGATCCATGTGGGAGCGCTATTGTCGCGGCGTTAATGCGATTGTCTACAT
GGTGGACGCAGCCGATCTGGACAAATTAGAGGCCTCGAGGAACGAGCTGC
ACTCACTGTTGGACAAACCGCAGCTCGCCGGCATTCCAGTTCTCGTACTG
GGCAATAAACGAGATCTTCCAGGCGCTCTCGATGAAACCGGACTCATCGA
ACGAATGAATCTATCGAGCATACAGGACCGTGAAATCTGCTGTTATAGTA
TTTCCTGCAAGGAGAAGGACAACATTGACATCACGCTGCAGTGGTTAATT
CAACATTCGAAAAGCCAAAGTCGTGCAAGCTTTCTAGACCAT
BO06468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gie-RC | 561 | CG7891-PC | 1..558 | 17..574 | 2775 | 99.8 | Plus |
Gie-RB | 561 | CG7891-PB | 1..558 | 17..574 | 2775 | 99.8 | Plus |
Gie-RA | 561 | CG7891-PA | 1..558 | 17..574 | 2775 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gie-RC | 1901 | CG7891-RC | 116..673 | 17..574 | 2775 | 99.8 | Plus |
Gie-RB | 1241 | CG7891-RB | 116..673 | 17..574 | 2775 | 99.8 | Plus |
Gie-RA | 916 | CG7891-RA | 116..673 | 17..574 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8128262..8128424 | 295..457 | 800 | 99.4 | Plus |
3R | 32079331 | 3R | 8128041..8128195 | 140..294 | 775 | 100 | Plus |
3R | 32079331 | 3R | 8126720..8126842 | 17..139 | 615 | 100 | Plus |
3R | 32079331 | 3R | 8128490..8128607 | 457..574 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:12:41 has no hits.
BO06468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:04 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-RA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:24 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-RA | 103..664 | 9..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:18 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gie-RA | 121..673 | 22..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:24 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7891-RA | 112..664 | 22..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:15 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gie-RA | 121..673 | 22..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:15 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8126725..8126842 | 22..139 | 100 | -> | Plus |
3R | 8128041..8128195 | 140..294 | 100 | -> | Plus |
3R | 8128262..8128423 | 295..456 | 99 | -> | Plus |
3R | 8128490..8128607 | 457..576 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:18 Download gff for
BO06468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3954212..3954329 | 457..576 | 98 | | Plus |
arm_3R | 3952447..3952564 | 22..139 | 100 | -> | Plus |
arm_3R | 3953763..3953917 | 140..294 | 100 | -> | Plus |
arm_3R | 3953984..3954145 | 295..456 | 99 | -> | Plus |
BO06468.pep Sequence
Translation from 16 to 592
> BO06468.pep
MLALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMI
PTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAAD
LDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLS
SIQDREICCYSISCKEKDNIDITLQWLIQHSKSQSRASFLDH
BO06468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gie-PC | 186 | CG7891-PC | 1..186 | 1..186 | 967 | 100 | Plus |
Gie-PB | 186 | CG7891-PB | 1..186 | 1..186 | 967 | 100 | Plus |
Gie-PA | 186 | CG7891-PA | 1..186 | 1..186 | 967 | 100 | Plus |
Arf51F-PE | 175 | CG8156-PE | 8..174 | 15..182 | 300 | 34.5 | Plus |
Arf51F-PA | 175 | CG8156-PA | 8..174 | 15..182 | 300 | 34.5 | Plus |