Clone BO06468 Report

Search the DGRC for BO06468

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptGie-RA
Protein status:BO06468.pep: validated full length
Sequenced Size:592

Clone Sequence Records

BO06468.3prime Sequence

590 bp (589 high quality bases) assembled on 2005-12-03

> BO06468.3prime
ATGGTCTAGAAAGCTTGCACGACTTTGGCTTTTCGAATGTTGAATTAACC
ACTGCAGCGTGATGTCAATGTTGTCCTTCTCCTTGCAGGAAATACTATAA
CAGCAGATTTCACGGTCCTGTATGCTCGATAGATTCATTCGTTCGATGAG
TCCGGTTTCATCGAGAGCGCCTGGAAGATCTCGTTTATTGCCCAGTACGA
GAACTGGAATGCCGGCGAGCTGCGGTTTGTCCAACAGTGAGTGCAGCTCG
TTCCTCGAGGCCTCTAATTTGTCCAGATCGGCTGCGTCCACCATGTAGAC
AATCGCATTAACGCCGCGACAATAGCGCTCCCACATGGATCGGAATCGAG
GTTGGCCTCCGATGTCCCACACCTTGATAGTCACATTGCCTCTGGTGATC
TTGCGCATGTTGAATCCAACTGTGGGTATCATGTCCTCAGCGAATTGGCC
GGATGCAATAACATTGACGAACGTCGTCTTCCCGGAGAACTGCAGCCCCA
CTAGCGTGAGTTCCATCTCCTCTTTCCAGAAGATGCTCTTGAACCACTCG
AGGATCCTGTTGATGAGGGCCAACATGTCGACTGATAACT

BO06468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7891-PA 561 CG7891-RA 1..558 576..19 2765 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gie-RC 1901 CG7891-RC 116..673 576..19 2775 99.8 Minus
Gie-RB 1241 CG7891-RB 116..673 576..19 2775 99.8 Minus
Gie-RA 916 CG7891-RA 116..673 576..19 2775 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8128262..8128424 298..136 800 99.4 Minus
3R 32079331 3R 8128041..8128195 453..299 775 100 Minus
3R 32079331 3R 8126720..8126842 576..454 615 100 Minus
3R 32079331 3R 8128490..8128607 136..19 590 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:00:59 has no hits.

BO06468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:29 Download gff for BO06468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7891-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:28 Download gff for BO06468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7891-PA 1..561 18..576 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:50 Download gff for BO06468.3prime
Subject Subject Range Query Range Percent Splice Strand
Gie-RA 112..673 19..584 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:22 Download gff for BO06468.3prime
Subject Subject Range Query Range Percent Splice Strand
Gie-RA 112..673 19..584 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:22 Download gff for BO06468.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8126716..8126842 454..584 96 -> Minus
3R 8128041..8128195 299..453 100 -> Minus
3R 8128262..8128423 137..298 99 -> Minus
3R 8128490..8128607 19..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:50 Download gff for BO06468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3952438..3952564 454..584 96 -> Minus
arm_3R 3953763..3953917 299..453 100 -> Minus
arm_3R 3953984..3954145 137..298 99 -> Minus
arm_3R 3954212..3954329 19..136 100   Minus

BO06468.5prime Sequence

590 bp (589 high quality bases) assembled on 2005-12-03

> BO06468.5prime
GAAGTTATCAGTCGACATGTTGGCCCTCATCAACAGGATCCTCGAGTGGT
TCAAGAGCATCTTCTGGAAAGAGGAGATGGAACTCACGCTAGTGGGGCTG
CAGTTCTCCGGGAAGACGACGTTCGTCAATGTTATTGCATCCGGCCAATT
CGCTGAGGACATGATACCCACAGTTGGATTCAACATGCGCAAGATCACCA
GAGGCAATGTGACTATCAAGGTGTGGGACATCGGAGGCCAACCTCGATTC
CGATCCATGTGGGAGCGCTATTGTCGCGGCGTTAATGCGATTGTCTACAT
GGTGGACGCAGCCGATCTGGACAAATTAGAGGCCTCGAGGAACGAGCTGC
ACTCACTGTTGGACAAACCGCAGCTCGCCGGCATTCCAGTTCTCGTACTG
GGCAATAAACGAGATCTTCCAGGCGCTCTCGATGAAACCGGACTCATCGA
ACGAATGAATCTATCGAGCATACAGGACCGTGAAATCTGCTGTTATAGTA
TTTCCTGCAAGGAGAAGGACAACATTGACATCACGCTGCAGTGGTTAATT
CAACATTCGAAAAGCCAAAGTCGTGCAAGCTTTCTAGACC

BO06468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7891-PA 561 CG7891-RA 1..558 17..574 2765 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Gie-RC 1901 CG7891-RC 116..673 17..574 2775 99.8 Plus
Gie-RB 1241 CG7891-RB 116..673 17..574 2775 99.8 Plus
Gie-RA 916 CG7891-RA 116..673 17..574 2775 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8128262..8128424 295..457 800 99.4 Plus
3R 32079331 3R 8128041..8128195 140..294 775 100 Plus
3R 32079331 3R 8126720..8126842 17..139 615 100 Plus
3R 32079331 3R 8128490..8128607 457..574 590 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:35:52 has no hits.

BO06468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:30 Download gff for BO06468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7891-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:30 Download gff for BO06468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7891-PA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:59:07 Download gff for BO06468.5prime
Subject Subject Range Query Range Percent Splice Strand
Gie-RA 112..673 9..574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:33 Download gff for BO06468.5prime
Subject Subject Range Query Range Percent Splice Strand
Gie-RA 112..673 9..574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:33 Download gff for BO06468.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8128490..8128607 457..574 100   Plus
3R 8128262..8128423 295..456 99 -> Plus
3R 8126716..8126842 9..139 96 -> Plus
3R 8128041..8128195 140..294 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:59:07 Download gff for BO06468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3952438..3952564 9..139 96 -> Plus
arm_3R 3953763..3953917 140..294 100 -> Plus
arm_3R 3953984..3954145 295..456 99 -> Plus
arm_3R 3954212..3954329 457..574 100   Plus

BO06468.complete Sequence

592 bp assembled on 2007-10-17

GenBank Submission: FJ630412

> BO06468.complete
GAAGTTATCAGTCGACATGTTGGCCCTCATCAACAGGATCCTCGAGTGGT
TCAAGAGCATCTTCTGGAAAGAGGAGATGGAACTCACGCTAGTGGGGCTG
CAGTTCTCCGGGAAGACGACGTTCGTCAATGTTATTGCATCCGGCCAATT
CGCTGAGGACATGATACCCACAGTTGGATTCAACATGCGCAAGATCACCA
GAGGCAATGTGACTATCAAGGTGTGGGACATCGGAGGCCAACCTCGATTC
CGATCCATGTGGGAGCGCTATTGTCGCGGCGTTAATGCGATTGTCTACAT
GGTGGACGCAGCCGATCTGGACAAATTAGAGGCCTCGAGGAACGAGCTGC
ACTCACTGTTGGACAAACCGCAGCTCGCCGGCATTCCAGTTCTCGTACTG
GGCAATAAACGAGATCTTCCAGGCGCTCTCGATGAAACCGGACTCATCGA
ACGAATGAATCTATCGAGCATACAGGACCGTGAAATCTGCTGTTATAGTA
TTTCCTGCAAGGAGAAGGACAACATTGACATCACGCTGCAGTGGTTAATT
CAACATTCGAAAAGCCAAAGTCGTGCAAGCTTTCTAGACCAT

BO06468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Gie-RC 561 CG7891-PC 1..558 17..574 2775 99.8 Plus
Gie-RB 561 CG7891-PB 1..558 17..574 2775 99.8 Plus
Gie-RA 561 CG7891-PA 1..558 17..574 2775 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Gie-RC 1901 CG7891-RC 116..673 17..574 2775 99.8 Plus
Gie-RB 1241 CG7891-RB 116..673 17..574 2775 99.8 Plus
Gie-RA 916 CG7891-RA 116..673 17..574 2775 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8128262..8128424 295..457 800 99.4 Plus
3R 32079331 3R 8128041..8128195 140..294 775 100 Plus
3R 32079331 3R 8126720..8126842 17..139 615 100 Plus
3R 32079331 3R 8128490..8128607 457..574 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:12:41 has no hits.

BO06468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:04 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
CG7891-RA 1..561 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:11:24 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
CG7891-RA 103..664 9..574 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:18 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
Gie-RA 121..673 22..576 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:24 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
CG7891-RA 112..664 22..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:15 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
Gie-RA 121..673 22..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:15 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8126725..8126842 22..139 100 -> Plus
3R 8128041..8128195 140..294 100 -> Plus
3R 8128262..8128423 295..456 99 -> Plus
3R 8128490..8128607 457..576 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:18 Download gff for BO06468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3954212..3954329 457..576 98   Plus
arm_3R 3952447..3952564 22..139 100 -> Plus
arm_3R 3953763..3953917 140..294 100 -> Plus
arm_3R 3953984..3954145 295..456 99 -> Plus

BO06468.pep Sequence

Translation from 16 to 592

> BO06468.pep
MLALINRILEWFKSIFWKEEMELTLVGLQFSGKTTFVNVIASGQFAEDMI
PTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAAD
LDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLS
SIQDREICCYSISCKEKDNIDITLQWLIQHSKSQSRASFLDH

BO06468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gie-PC 186 CG7891-PC 1..186 1..186 967 100 Plus
Gie-PB 186 CG7891-PB 1..186 1..186 967 100 Plus
Gie-PA 186 CG7891-PA 1..186 1..186 967 100 Plus
Arf51F-PE 175 CG8156-PE 8..174 15..182 300 34.5 Plus
Arf51F-PA 175 CG8156-PA 8..174 15..182 300 34.5 Plus