Clone BO06469 Report

Search the DGRC for BO06469

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG8461-RA
Protein status:BO06469.pep: validated full length
Sequenced Size:766

Clone Sequence Records

BO06469.3prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-03

> BO06469.3prime
ATGGTCTAGAAAGCTTGCTTCTATACCAATGCGTTTGCGGTCCTTGGCGG
CGTTCTTCTTGCGTCGCTTTTCCATGTGCTTGTTGAGTTTTCCAGTGTTT
TTCAGCTTCTCGAATTGGGCAACTAGTTCCTTAGCTCGACGCTCCTTCTT
TGTCAGATAATGAGGTTGTTGTCCCAAATCGTGTTTCTTCTGAATGGCGG
AGCGCTCCTTTTTCAGTTGCTTCTGTTTGGTGTGCCACTTCTTGTCCTCC
ACATTTTTATTGATAAGTCGCTGCATGGTGTCCTTTATATGGTGCTTCTC
CGCCTCATCCTCCACTTCGTCCAGTTTTTTCTTCAGCTGACCAACTTCCT
TTGCTCGAATCTGGGAGACAAACTGGTAGTTCTTCTTGAAGGTTTCTGCA
CTATATGTTCCGGATTTTTCGTCAAATCTTGGATCTCTGAGTTCAACATT
TTTTTTCCGCTCCACTCTGTGCTCGGCGCCCAAAAATGGAACCTGTCGTC
TGGTGGTCATTTCACGAGGTCGGTTTTTGTTTAGCCGCTTGAGGTCGGTT
TTGGCCTTTGGTTTTTGGGGTCTAGAACTCTTGCTACCGAGCACAGCCTC
TTTGTACACCTTGGCGCCCAGCTCCTCTTTTAGTTTCATTATCTCCTCGA
ATGACATTCCTTTGAGATCTTCGCGAATGGCATTCTGAGTTTCGTTGTCA
TCGCTAGCCTCGTGCTCAGAAGCTGAAGAGGATTCACTGGGAGAGGACAT
GTCGACTGATAACT

BO06469.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-PA 735 CG8461-RA 1..732 750..19 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 883 CG8461-RA 91..822 750..19 3660 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512883..14513422 147..686 2700 100 Plus
3R 32079331 3R 14512700..14512827 19..146 640 100 Plus
3R 32079331 3R 14513482..14513547 685..750 330 100 Plus
Blast to na_te.dros performed 2015-02-12 16:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3194..3247 653..600 108 66.7 Minus

BO06469.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:31 Download gff for BO06469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 15..750 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:32 Download gff for BO06469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 15..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:13 Download gff for BO06469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 11..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:49 Download gff for BO06469.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 11..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:49 Download gff for BO06469.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14512692..14512827 11..146 97 <- Plus
3R 14512883..14513420 147..684 100 <- Plus
3R 14513482..14513547 685..750 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:13 Download gff for BO06469.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338414..10338549 11..146 97 <- Plus
arm_3R 10338605..10339142 147..684 100 <- Plus
arm_3R 10339204..10339269 685..750 100   Plus

BO06469.5prime Sequence

764 bp (717 high quality bases) assembled on 2005-12-03

> BO06469.5prime
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAAGC
AAGCTTTCTAGACC

BO06469.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-PA 735 CG8461-RA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 883 CG8461-RA 91..822 17..748 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512883..14513422 620..81 2700 100 Minus
3R 32079331 3R 14512700..14512827 748..621 640 100 Minus
3R 32079331 3R 14513482..14513547 82..17 330 100 Minus
Blast to na_te.dros performed 2015-02-13 12:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3194..3247 114..167 108 66.7 Plus

BO06469.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:32 Download gff for BO06469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 17..752 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:33 Download gff for BO06469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-PA 1..735 17..752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:14 Download gff for BO06469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 17..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:10 Download gff for BO06469.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..830 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:10 Download gff for BO06469.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14512692..14512827 621..756 97 <- Minus
3R 14512883..14513420 83..620 100 <- Minus
3R 14513482..14513547 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:14 Download gff for BO06469.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338414..10338549 621..756 97 <- Minus
arm_3R 10338605..10339142 83..620 100 <- Minus
arm_3R 10339204..10339269 17..82 100   Minus

BO06469.complete Sequence

766 bp (766 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638639

> BO06469.complete
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAAGC
AAGCTTTCTAGACCAT

BO06469.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 735 CG8461-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-RA 883 CG8461-RA 91..822 17..748 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14512883..14513422 620..81 2700 100 Minus
3R 32079331 3R 14512700..14512827 748..621 640 100 Minus
3R 32079331 3R 14513482..14513547 82..17 330 100 Minus
Blast to na_te.dros performed 2014-11-27 13:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3S18 6126 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). 3194..3247 114..167 108 66.7 Plus

BO06469.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:24 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 1..735 17..752 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:18 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 59..798 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:29 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..822 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:24 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 60..799 17..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:23 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
CG8461-RA 91..822 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:23 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14512698..14512827 621..750 98 <- Minus
3R 14512883..14513420 83..620 100 <- Minus
3R 14513482..14513547 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:29 Download gff for BO06469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10338420..10338549 621..750 98 <- Minus
arm_3R 10338605..10339142 83..620 100 <- Minus
arm_3R 10339204..10339269 17..82 100   Minus

BO06469.pep Sequence

Translation from 16 to 766

> BO06469.pep
MSSPSESSSASEHEASDDNETQNAIREDLKGMSFEEIMKLKEELGAKVYK
EAVLGSKSSRPQKPKAKTDLKRLNKNRPREMTTRRQVPFLGAEHRVERKK
NVELRDPRFDEKSGTYSAETFKKNYQFVSQIRAKEVGQLKKKLDEVEDEA
EKHHIKDTMQRLINKNVEDKKWHTKQKQLKKERSAIQKKHDLGQQPHYLT
KKERRAKELVAQFEKLKNTGKLNKHMEKRRKKNAAKDRKRIGIEASFLDH

BO06469.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8461-PA 244 CG8461-PA 1..244 1..244 1244 100 Plus