Clone Sequence Records
BO06469.3prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-03
> BO06469.3prime
ATGGTCTAGAAAGCTTGCTTCTATACCAATGCGTTTGCGGTCCTTGGCGG
CGTTCTTCTTGCGTCGCTTTTCCATGTGCTTGTTGAGTTTTCCAGTGTTT
TTCAGCTTCTCGAATTGGGCAACTAGTTCCTTAGCTCGACGCTCCTTCTT
TGTCAGATAATGAGGTTGTTGTCCCAAATCGTGTTTCTTCTGAATGGCGG
AGCGCTCCTTTTTCAGTTGCTTCTGTTTGGTGTGCCACTTCTTGTCCTCC
ACATTTTTATTGATAAGTCGCTGCATGGTGTCCTTTATATGGTGCTTCTC
CGCCTCATCCTCCACTTCGTCCAGTTTTTTCTTCAGCTGACCAACTTCCT
TTGCTCGAATCTGGGAGACAAACTGGTAGTTCTTCTTGAAGGTTTCTGCA
CTATATGTTCCGGATTTTTCGTCAAATCTTGGATCTCTGAGTTCAACATT
TTTTTTCCGCTCCACTCTGTGCTCGGCGCCCAAAAATGGAACCTGTCGTC
TGGTGGTCATTTCACGAGGTCGGTTTTTGTTTAGCCGCTTGAGGTCGGTT
TTGGCCTTTGGTTTTTGGGGTCTAGAACTCTTGCTACCGAGCACAGCCTC
TTTGTACACCTTGGCGCCCAGCTCCTCTTTTAGTTTCATTATCTCCTCGA
ATGACATTCCTTTGAGATCTTCGCGAATGGCATTCTGAGTTTCGTTGTCA
TCGCTAGCCTCGTGCTCAGAAGCTGAAGAGGATTCACTGGGAGAGGACAT
GTCGACTGATAACT
BO06469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-PA | 735 | CG8461-RA | 1..732 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 883 | CG8461-RA | 91..822 | 750..19 | 3660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512883..14513422 | 147..686 | 2700 | 100 | Plus |
3R | 32079331 | 3R | 14512700..14512827 | 19..146 | 640 | 100 | Plus |
3R | 32079331 | 3R | 14513482..14513547 | 685..750 | 330 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 653..600 | 108 | 66.7 | Minus |
BO06469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:31 Download gff for
BO06469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:32 Download gff for
BO06469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:13 Download gff for
BO06469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 11..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:49 Download gff for
BO06469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 11..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:49 Download gff for
BO06469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512692..14512827 | 11..146 | 97 | <- | Plus |
3R | 14512883..14513420 | 147..684 | 100 | <- | Plus |
3R | 14513482..14513547 | 685..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:13 Download gff for
BO06469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338414..10338549 | 11..146 | 97 | <- | Plus |
arm_3R | 10338605..10339142 | 147..684 | 100 | <- | Plus |
arm_3R | 10339204..10339269 | 685..750 | 100 | | Plus |
BO06469.5prime Sequence
764 bp (717 high quality bases) assembled on 2005-12-03
> BO06469.5prime
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAAGC
AAGCTTTCTAGACC
BO06469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-PA | 735 | CG8461-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 883 | CG8461-RA | 91..822 | 17..748 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512883..14513422 | 620..81 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 14512700..14512827 | 748..621 | 640 | 100 | Minus |
3R | 32079331 | 3R | 14513482..14513547 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 114..167 | 108 | 66.7 | Plus |
BO06469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:32 Download gff for
BO06469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:33 Download gff for
BO06469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-PA | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:14 Download gff for
BO06469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:10 Download gff for
BO06469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..830 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:10 Download gff for
BO06469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512692..14512827 | 621..756 | 97 | <- | Minus |
3R | 14512883..14513420 | 83..620 | 100 | <- | Minus |
3R | 14513482..14513547 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:14 Download gff for
BO06469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338414..10338549 | 621..756 | 97 | <- | Minus |
arm_3R | 10338605..10339142 | 83..620 | 100 | <- | Minus |
arm_3R | 10339204..10339269 | 17..82 | 100 | | Minus |
BO06469.complete Sequence
766 bp (766 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638639
> BO06469.complete
GAAGTTATCAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTG
AGCACGAGGCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGAT
CTCAAAGGAATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGG
CGCCAAGGTGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCC
AAAAACCAAAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCT
CGTGAAATGACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAG
AGTGGAGCGGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAA
AATCCGGAACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTC
TCCCAGATTCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGA
AGTGGAGGATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGAC
TTATCAATAAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAA
CTGAAAAAGGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACA
ACCTCATTATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCC
AATTCGAGAAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAG
CGACGCAAGAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAAGC
AAGCTTTCTAGACCAT
BO06469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 735 | CG8461-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-RA | 883 | CG8461-RA | 91..822 | 17..748 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14512883..14513422 | 620..81 | 2700 | 100 | Minus |
3R | 32079331 | 3R | 14512700..14512827 | 748..621 | 640 | 100 | Minus |
3R | 32079331 | 3R | 14513482..14513547 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 114..167 | 108 | 66.7 | Plus |
BO06469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:24 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:18 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 59..798 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:29 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..822 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:24 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 60..799 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:23 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8461-RA | 91..822 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:23 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14512698..14512827 | 621..750 | 98 | <- | Minus |
3R | 14512883..14513420 | 83..620 | 100 | <- | Minus |
3R | 14513482..14513547 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:29 Download gff for
BO06469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10338420..10338549 | 621..750 | 98 | <- | Minus |
arm_3R | 10338605..10339142 | 83..620 | 100 | <- | Minus |
arm_3R | 10339204..10339269 | 17..82 | 100 | | Minus |
BO06469.pep Sequence
Translation from 16 to 766
> BO06469.pep
MSSPSESSSASEHEASDDNETQNAIREDLKGMSFEEIMKLKEELGAKVYK
EAVLGSKSSRPQKPKAKTDLKRLNKNRPREMTTRRQVPFLGAEHRVERKK
NVELRDPRFDEKSGTYSAETFKKNYQFVSQIRAKEVGQLKKKLDEVEDEA
EKHHIKDTMQRLINKNVEDKKWHTKQKQLKKERSAIQKKHDLGQQPHYLT
KKERRAKELVAQFEKLKNTGKLNKHMEKRRKKNAAKDRKRIGIEASFLDH
BO06469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8461-PA | 244 | CG8461-PA | 1..244 | 1..244 | 1244 | 100 | Plus |