Clone Sequence Records
BO06473.3prime Sequence
891 bp (806 high quality bases) assembled on 2005-12-03
> BO06473.3prime
ATGGTCTAGAAAGCTTGCCAATTTGCTGCGCTTTTTGTTGGTCCATGTGA
AAAATCGCTTTGGTTTTCTCGATCTATCTTCCTTTCCGGCCACAGTCCAG
GAGGTCATAGCAGGAGGTCTGTGATGTTGGATGAAGGGCACAATGTAACC
GGCGCATTCCTCGGCGGCATGGAGATGCAGATGATGGGTGCCGTTTTCCA
CCTCGTAGAACTCAAAGTGCGGATTATCCTTGGCCAAAATCGATATAGCC
TCGTTGTTGCGGACGGAGAGATATGGTGACAAGGAGCCCTTGATGATTAG
ATATGGCTTTTTAATGATCCGCCTCGCCATTTCTGCCCCCAGACTATCGT
CGATATCTATGTAGTGGTAGTACTTTACTCGAATATCCCTAGTGAAATAG
AACCGTTCGGGATACAGTTTCGACTTGGCCAACTGGCGGTGGAGGAGGTG
CTTAGCCAGTTCGGGGGATACGGAATTAAAGCTTCCCGCAGCCAGCACCT
TTCCCAATTGGTTGTGCGTGTAGGAGGGCGGCTCAATGTAATTTCCCAGC
TTCTGTCGCTCAACATTCACTAGTTGTTTCTCTATACTAAGGTCCATGTA
GTCTATGTCGTTTCTCAAGGGGAGCAGTATGTCCAGGGAGACGATCATAT
CGACGGTGTGAGGAGCAAGAGAGGCATAAATGAAGCTCAGGACTCCGCCC
AGTGAGTGTCCAATGAGAGAGACCTTTGACCATCCGTACTCCTTCATGAC
CAGTGGAATAGTGAACACGTACTCGTACACACTGTAGTACATTCCCGGTG
GCAAATGCGAGGATCTTCCATGTCCTGGCAGATCGATGCAGAGTACTCCT
AGATAGTCAGGAAGCAGGGGAATGAGCCGATCGAAGGTCCC
BO06473.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PA | 1008 | CG5704-RA | 136..1001 | 888..23 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 261..1130 | 888..19 | 4335 | 99.9 | Minus |
CG5704-RA | 1220 | CG5704-RA | 261..1130 | 888..19 | 4335 | 99.9 | Minus |
CG15879-RA | 1389 | CG15879-RA | 266..538 | 888..616 | 420 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169712..2170581 | 19..888 | 4335 | 99.9 | Plus |
3L | 28110227 | 3L | 2168401..2168673 | 616..888 | 420 | 76.9 | Plus |
3L | 28110227 | 3L | 2173650..2173858 | 680..888 | 295 | 76.1 | Plus |
3L | 28110227 | 3L | 2172387..2172579 | 696..888 | 290 | 76.7 | Plus |
3L | 28110227 | 3L | 2173080..2173195 | 113..228 | 265 | 81.9 | Plus |
3L | 28110227 | 3L | 2167889..2167998 | 116..225 | 250 | 81.8 | Plus |
3L | 28110227 | 3L | 2171880..2171938 | 182..240 | 235 | 93.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:16:55 has no hits.
BO06473.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:37 Download gff for
BO06473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 132..1008 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:40 Download gff for
BO06473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 132..1008 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:44 Download gff for
BO06473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 257..1130 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:26 Download gff for
BO06473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 257..1130 | 19..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:26 Download gff for
BO06473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169712..2170584 | 19..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:44 Download gff for
BO06473.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169712..2170584 | 19..891 | 99 | | Plus |
BO06473.5prime Sequence
867 bp (705 high quality bases) assembled on 2005-12-03
> BO06473.5prime
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACACGAGGCTATATCGAT
TTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGAAAAACGGCA
CCATCATCTGCATCTCC
BO06473.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PA | 1008 | CG5704-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
CG5704-PA | 1008 | CG5704-RA | 770..837 | 785..852 | 315 | 98.5 | Plus |
CG15879-PA | 1029 | CG15879-RA | 82..161 | 107..186 | 275 | 93.7 | Plus |
CG15820-PA | 927 | CG15820-RA | 89..164 | 111..186 | 255 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 126..978 | 17..867 | 4200 | 99.6 | Plus |
CG5704-RA | 1220 | CG5704-RA | 126..978 | 17..867 | 4200 | 99.6 | Plus |
CG15879-RA | 1389 | CG15879-RA | 126..538 | 12..424 | 730 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169864..2170692 | 867..41 | 4030 | 99.6 | Minus |
3L | 28110227 | 3L | 2168401..2168761 | 424..64 | 680 | 79.2 | Minus |
3L | 28110227 | 3L | 2173650..2173960 | 360..50 | 520 | 77.8 | Minus |
3L | 28110227 | 3L | 2172387..2172680 | 344..51 | 480 | 77.6 | Minus |
3L | 28110227 | 3L | 2171885..2171938 | 852..799 | 195 | 90.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:27:02 has no hits.
BO06473.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:38 Download gff for
BO06473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 1..853 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:42 Download gff for
BO06473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 1..853 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:30 Download gff for
BO06473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 117..978 | 5..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:50 Download gff for
BO06473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 117..978 | 5..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:50 Download gff for
BO06473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169864..2170692 | 41..867 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:30 Download gff for
BO06473.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169864..2170692 | 41..867 | 99 | <- | Minus |
BO06473.complete Sequence
1039 bp assembled on 2011-06-28
GenBank Submission: KX799225
> BO06473.complete
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGC
ACCCATCATCTGCATCTCCATGCCGCCGAGGAATGCGCCGGTTACATTGT
GCCCTTCATCCAACATCACAGACCTCCTGCTATGACCTCCTGGACTGTGG
CCGGAAAGGAAGATAGATCGAGAAAACCAAAGCGATTTTTCACATGGACC
AACAAAAAGCGCAGCAAATTGGCAAGCTTTCTAGACCAT
BO06473.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1008 | CG5704-PB | 1..1005 | 17..1021 | 5010 | 99.9 | Plus |
CG5704-RA | 1008 | CG5704-PA | 1..1005 | 17..1021 | 5010 | 99.9 | Plus |
CG15879-RA | 1029 | CG15879-PA | 2..399 | 27..424 | 685 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 126..1130 | 17..1021 | 5010 | 99.9 | Plus |
CG5704-RA | 1220 | CG5704-RA | 126..1130 | 17..1021 | 5010 | 99.9 | Plus |
CG15879-RA | 1389 | CG15879-RA | 126..538 | 12..424 | 730 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169712..2170692 | 1021..41 | 4890 | 99.9 | Minus |
3L | 28110227 | 3L | 2168401..2168761 | 424..64 | 680 | 79.2 | Minus |
3L | 28110227 | 3L | 2173650..2173960 | 360..50 | 520 | 77.8 | Minus |
3L | 28110227 | 3L | 2172387..2172680 | 344..51 | 480 | 77.6 | Minus |
3L | 28110227 | 3L | 2173080..2173195 | 927..812 | 265 | 81.9 | Minus |
3L | 28110227 | 3L | 2167889..2167998 | 924..815 | 250 | 81.8 | Minus |
3L | 28110227 | 3L | 2171880..2171938 | 858..800 | 235 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:54 has no hits.
BO06473.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:20 Download gff for
BO06473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 96..1100 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:08 Download gff for
BO06473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 126..1130 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:48 Download gff for
BO06473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 126..1130 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:48 Download gff for
BO06473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169709..2170692 | 41..1023 | 99 | <- | Minus |
3L | 2170823..2170846 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:08 Download gff for
BO06473.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169709..2170692 | 41..1023 | 99 | <- | Minus |
arm_3L | 2170823..2170846 | 17..40 | 100 | | Minus |
BO06473.pep Sequence
Translation from 16 to 1039
> BO06473.pep
MGTLSLSDFEAVKIPVPWGHISGRWYGNRNERPILAIHGWLDNLGTFDRL
IPLLPDYLGVLCIDLPGHGRSSHLPPGMYYSVYEYVFTIPLVMKEYGWSK
VSLIGHSLGGVLSFIYASLAPHTVDMIVSLDILLPLRNDIDYMDLSIEKQ
LVNVERQKLGNYIEPPSYTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAK
SKLYPERFYFTRDIRVKYYHYIDIDDSLGAEMARRIIKKPYLIIKGSLSP
YLSVRNNEAISILAKDNPHFEFYEVENGTHHLHLHAAEECAGYIVPFIQH
HRPPAMTSWTVAGKEDRSRKPKRFFTWTNKKRSKLASFLDH
BO06473.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PB | 335 | CG5704-PB | 1..335 | 1..335 | 1791 | 100 | Plus |
CG5704-PA | 335 | CG5704-PA | 1..335 | 1..335 | 1791 | 100 | Plus |
CG15879-PA | 342 | CG15879-PA | 1..342 | 4..335 | 1212 | 65.2 | Plus |
CG15820-PA | 308 | CG15820-PA | 7..303 | 9..304 | 1096 | 68.4 | Plus |
CG5707-PA | 357 | CG5707-PA | 22..329 | 12..316 | 799 | 49.2 | Plus |