Clone BO06473 Report

Search the DGRC for BO06473

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG5704-RA
Protein status:BO06473.pep: Imported from assembly
Sequenced Size:1039

Clone Sequence Records

BO06473.3prime Sequence

891 bp (806 high quality bases) assembled on 2005-12-03

> BO06473.3prime
ATGGTCTAGAAAGCTTGCCAATTTGCTGCGCTTTTTGTTGGTCCATGTGA
AAAATCGCTTTGGTTTTCTCGATCTATCTTCCTTTCCGGCCACAGTCCAG
GAGGTCATAGCAGGAGGTCTGTGATGTTGGATGAAGGGCACAATGTAACC
GGCGCATTCCTCGGCGGCATGGAGATGCAGATGATGGGTGCCGTTTTCCA
CCTCGTAGAACTCAAAGTGCGGATTATCCTTGGCCAAAATCGATATAGCC
TCGTTGTTGCGGACGGAGAGATATGGTGACAAGGAGCCCTTGATGATTAG
ATATGGCTTTTTAATGATCCGCCTCGCCATTTCTGCCCCCAGACTATCGT
CGATATCTATGTAGTGGTAGTACTTTACTCGAATATCCCTAGTGAAATAG
AACCGTTCGGGATACAGTTTCGACTTGGCCAACTGGCGGTGGAGGAGGTG
CTTAGCCAGTTCGGGGGATACGGAATTAAAGCTTCCCGCAGCCAGCACCT
TTCCCAATTGGTTGTGCGTGTAGGAGGGCGGCTCAATGTAATTTCCCAGC
TTCTGTCGCTCAACATTCACTAGTTGTTTCTCTATACTAAGGTCCATGTA
GTCTATGTCGTTTCTCAAGGGGAGCAGTATGTCCAGGGAGACGATCATAT
CGACGGTGTGAGGAGCAAGAGAGGCATAAATGAAGCTCAGGACTCCGCCC
AGTGAGTGTCCAATGAGAGAGACCTTTGACCATCCGTACTCCTTCATGAC
CAGTGGAATAGTGAACACGTACTCGTACACACTGTAGTACATTCCCGGTG
GCAAATGCGAGGATCTTCCATGTCCTGGCAGATCGATGCAGAGTACTCCT
AGATAGTCAGGAAGCAGGGGAATGAGCCGATCGAAGGTCCC

BO06473.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-PA 1008 CG5704-RA 136..1001 888..23 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1289 CG5704-RB 261..1130 888..19 4335 99.9 Minus
CG5704-RA 1220 CG5704-RA 261..1130 888..19 4335 99.9 Minus
CG15879-RA 1389 CG15879-RA 266..538 888..616 420 76.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2169712..2170581 19..888 4335 99.9 Plus
3L 28110227 3L 2168401..2168673 616..888 420 76.9 Plus
3L 28110227 3L 2173650..2173858 680..888 295 76.1 Plus
3L 28110227 3L 2172387..2172579 696..888 290 76.7 Plus
3L 28110227 3L 2173080..2173195 113..228 265 81.9 Plus
3L 28110227 3L 2167889..2167998 116..225 250 81.8 Plus
3L 28110227 3L 2171880..2171938 182..240 235 93.2 Plus
Blast to na_te.dros performed on 2015-02-13 01:16:55 has no hits.

BO06473.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:37 Download gff for BO06473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 132..1008 16..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:40 Download gff for BO06473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 132..1008 16..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:44 Download gff for BO06473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 257..1130 19..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:26 Download gff for BO06473.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 257..1130 19..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:26 Download gff for BO06473.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2169712..2170584 19..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:44 Download gff for BO06473.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2169712..2170584 19..891 99   Plus

BO06473.5prime Sequence

867 bp (705 high quality bases) assembled on 2005-12-03

> BO06473.5prime
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACACGAGGCTATATCGAT
TTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGAAAAACGGCA
CCATCATCTGCATCTCC

BO06473.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-PA 1008 CG5704-RA 1..769 17..785 3845 100 Plus
CG5704-PA 1008 CG5704-RA 770..837 785..852 315 98.5 Plus
CG15879-PA 1029 CG15879-RA 82..161 107..186 275 93.7 Plus
CG15820-PA 927 CG15820-RA 89..164 111..186 255 93.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1289 CG5704-RB 126..978 17..867 4200 99.6 Plus
CG5704-RA 1220 CG5704-RA 126..978 17..867 4200 99.6 Plus
CG15879-RA 1389 CG15879-RA 126..538 12..424 730 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2169864..2170692 867..41 4030 99.6 Minus
3L 28110227 3L 2168401..2168761 424..64 680 79.2 Minus
3L 28110227 3L 2173650..2173960 360..50 520 77.8 Minus
3L 28110227 3L 2172387..2172680 344..51 480 77.6 Minus
3L 28110227 3L 2171885..2171938 852..799 195 90.7 Minus
Blast to na_te.dros performed on 2015-02-11 16:27:02 has no hits.

BO06473.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:38 Download gff for BO06473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 1..853 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:42 Download gff for BO06473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 1..853 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:30 Download gff for BO06473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 117..978 5..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:50 Download gff for BO06473.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 117..978 5..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:50 Download gff for BO06473.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2169864..2170692 41..867 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:30 Download gff for BO06473.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2169864..2170692 41..867 99 <- Minus

BO06473.complete Sequence

1039 bp assembled on 2011-06-28

GenBank Submission: KX799225

> BO06473.complete
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGC
ACCCATCATCTGCATCTCCATGCCGCCGAGGAATGCGCCGGTTACATTGT
GCCCTTCATCCAACATCACAGACCTCCTGCTATGACCTCCTGGACTGTGG
CCGGAAAGGAAGATAGATCGAGAAAACCAAAGCGATTTTTCACATGGACC
AACAAAAAGCGCAGCAAATTGGCAAGCTTTCTAGACCAT

BO06473.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1008 CG5704-PB 1..1005 17..1021 5010 99.9 Plus
CG5704-RA 1008 CG5704-PA 1..1005 17..1021 5010 99.9 Plus
CG15879-RA 1029 CG15879-PA 2..399 27..424 685 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1289 CG5704-RB 126..1130 17..1021 5010 99.9 Plus
CG5704-RA 1220 CG5704-RA 126..1130 17..1021 5010 99.9 Plus
CG15879-RA 1389 CG15879-RA 126..538 12..424 730 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2169712..2170692 1021..41 4890 99.9 Minus
3L 28110227 3L 2168401..2168761 424..64 680 79.2 Minus
3L 28110227 3L 2173650..2173960 360..50 520 77.8 Minus
3L 28110227 3L 2172387..2172680 344..51 480 77.6 Minus
3L 28110227 3L 2173080..2173195 927..812 265 81.9 Minus
3L 28110227 3L 2167889..2167998 924..815 250 81.8 Minus
3L 28110227 3L 2171880..2171938 858..800 235 93.2 Minus
Blast to na_te.dros performed on 2014-11-26 16:12:54 has no hits.

BO06473.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:20 Download gff for BO06473.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 96..1100 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:08 Download gff for BO06473.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 126..1130 17..1023 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:48 Download gff for BO06473.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 126..1130 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:48 Download gff for BO06473.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2169709..2170692 41..1023 99 <- Minus
3L 2170823..2170846 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:08 Download gff for BO06473.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2169709..2170692 41..1023 99 <- Minus
arm_3L 2170823..2170846 17..40 100   Minus

BO06473.pep Sequence

Translation from 16 to 1039

> BO06473.pep
MGTLSLSDFEAVKIPVPWGHISGRWYGNRNERPILAIHGWLDNLGTFDRL
IPLLPDYLGVLCIDLPGHGRSSHLPPGMYYSVYEYVFTIPLVMKEYGWSK
VSLIGHSLGGVLSFIYASLAPHTVDMIVSLDILLPLRNDIDYMDLSIEKQ
LVNVERQKLGNYIEPPSYTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAK
SKLYPERFYFTRDIRVKYYHYIDIDDSLGAEMARRIIKKPYLIIKGSLSP
YLSVRNNEAISILAKDNPHFEFYEVENGTHHLHLHAAEECAGYIVPFIQH
HRPPAMTSWTVAGKEDRSRKPKRFFTWTNKKRSKLASFLDH

BO06473.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-PB 335 CG5704-PB 1..335 1..335 1791 100 Plus
CG5704-PA 335 CG5704-PA 1..335 1..335 1791 100 Plus
CG15879-PA 342 CG15879-PA 1..342 4..335 1212 65.2 Plus
CG15820-PA 308 CG15820-PA 7..303 9..304 1096 68.4 Plus
CG5707-PA 357 CG5707-PA 22..329 12..316 799 49.2 Plus