Clone Sequence Records
BO06474.3prime Sequence
818 bp (817 high quality bases) assembled on 2005-12-03
> BO06474.3prime
ATGGTCTAGAAAGCTTGCATTTGGATACAGTATATCGTAGTGGCCTGGTC
GATATATCAGGTAAATTCGGGGCTCGCTTCCCTCGGGGAAATCGTGGGCC
TTCACAGTCCCACCTTCGCCACGGTCCAAGTACTCGACACGAACTCCAGC
GCCGAGGGCGGTGCATAGAGCGATTATGTGGATGTGATCCGATTCCTTGT
ACATCGGCTCCACTTCCAGATGGCGGAACGCCTCAATGGTGAGGTCGCCT
TCGATGAAATTTTGGTAAAAATCGGCCTCCTCCTGCAGTTTTCCCGAGGT
GATCAAACGTAGGTAAACCACCACGTAGTCTGAGTAACCCTGCTCATTGA
AGATCTTGTGCAACTCATCTTGGACCGTGCTGTGTCCTCCTGCATTGTCG
GGGCTAACGCGCTGGATGACTTCCATGAACGTTTCGTGAAAGTCCTCCAA
TGTAAAACTAGGAAATCCCAGCTGAACGAGCTTCTCCTTGGACTCCTCGG
CCAGTTTTTTGAACTCCTGGTAGGCACTGGTGTTTGAGATCAAGTACTCC
AAGTAGGAGTAGGCGAAGGCTCGGAAGAAACAATTGCCATCGGGGCGGGT
GCGGCGAATGAACTTGTACTTTTTGGACAGATCCTGGATCTTGGCGGTGA
AGATCTCGTCGCCACTGTATTCCGCATACAAGCAGGTGAGTGGCAACTGC
TCGCTGACCAAGGGAGTTGTGTCGCTGATCTCTTTTTCAATATCCCGTTT
CTGCTGAATTATTAGTTCGTCGCGATTGCCATCATTATGGGTAAACGGCT
CCATGTCGACTGATAACT
BO06474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-PA | 789 | CG4968-RA | 1..786 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 986 | CG4968-RA | 122..909 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10307557..10307968 | 430..19 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 10307192..10307493 | 731..430 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 10307043..10307119 | 806..730 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:48:15 has no hits.
BO06474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:39 Download gff for
BO06474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:43 Download gff for
BO06474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:20 Download gff for
BO06474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..915 | 11..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:54 Download gff for
BO06474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..915 | 11..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:54 Download gff for
BO06474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10307039..10307119 | 730..811 | 96 | -> | Minus |
2L | 10307194..10307493 | 430..729 | 100 | -> | Minus |
2L | 10307558..10307974 | 11..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:20 Download gff for
BO06474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10307039..10307119 | 730..811 | 96 | -> | Minus |
arm_2L | 10307194..10307493 | 430..729 | 100 | -> | Minus |
arm_2L | 10307558..10307974 | 11..429 | 99 | | Minus |
BO06474.5prime Sequence
818 bp (795 high quality bases) assembled on 2005-12-03
> BO06474.5prime
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATGGCAGCTTTCTAGACC
BO06474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-PA | 789 | CG4968-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 986 | CG4968-RA | 122..909 | 15..802 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10307557..10307968 | 391..802 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 10307192..10307493 | 90..391 | 1510 | 100 | Plus |
2L | 23513712 | 2L | 10307043..10307119 | 15..91 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:48:37 has no hits.
BO06474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:40 Download gff for
BO06474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:45 Download gff for
BO06474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:30 Download gff for
BO06474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..915 | 10..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:57 Download gff for
BO06474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..915 | 10..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:57 Download gff for
BO06474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10307039..10307119 | 10..91 | 96 | -> | Plus |
2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
2L | 10307558..10307974 | 392..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:30 Download gff for
BO06474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10307039..10307119 | 10..91 | 96 | -> | Plus |
arm_2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
arm_2L | 10307558..10307974 | 392..810 | 99 | | Plus |
BO06474.complete Sequence
820 bp (820 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630413
> BO06474.complete
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATGCAAGCTTTCTAGACCAT
BO06474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 789 | CG4968-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 986 | CG4968-RA | 122..909 | 15..802 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10307557..10307968 | 391..802 | 2060 | 100 | Plus |
2L | 23513712 | 2L | 10307192..10307493 | 90..391 | 1510 | 100 | Plus |
2L | 23513712 | 2L | 10307043..10307119 | 15..91 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:38:42 has no hits.
BO06474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:26 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:20 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 137..934 | 10..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:29 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 124..909 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:26 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 137..934 | 10..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:34 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 124..909 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:34 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10307045..10307119 | 17..91 | 100 | -> | Plus |
2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
2L | 10307558..10307968 | 392..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:29 Download gff for
BO06474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10307045..10307119 | 17..91 | 100 | -> | Plus |
arm_2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
arm_2L | 10307558..10307968 | 392..804 | 99 | | Plus |
BO06474.pep Sequence
Translation from 16 to 820
> BO06474.pep
MEPFTHNDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDE
IFTAKIQDLSKKYKFIRRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKK
LAEESKEKLVQLGFPSFTLEDFHETFMEVIQRVSPDNAGGHSTVQDELHK
IFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEGDLTIEAFRHLEVEP
MYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPRIYLI
YRPGHYDILYPNASFLDH
BO06474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-PA | 262 | CG4968-PA | 1..262 | 1..262 | 1380 | 100 | Plus |