Clone BO06474 Report

Search the DGRC for BO06474

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG4968-RA
Protein status:BO06474.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO06474.3prime Sequence

818 bp (817 high quality bases) assembled on 2005-12-03

> BO06474.3prime
ATGGTCTAGAAAGCTTGCATTTGGATACAGTATATCGTAGTGGCCTGGTC
GATATATCAGGTAAATTCGGGGCTCGCTTCCCTCGGGGAAATCGTGGGCC
TTCACAGTCCCACCTTCGCCACGGTCCAAGTACTCGACACGAACTCCAGC
GCCGAGGGCGGTGCATAGAGCGATTATGTGGATGTGATCCGATTCCTTGT
ACATCGGCTCCACTTCCAGATGGCGGAACGCCTCAATGGTGAGGTCGCCT
TCGATGAAATTTTGGTAAAAATCGGCCTCCTCCTGCAGTTTTCCCGAGGT
GATCAAACGTAGGTAAACCACCACGTAGTCTGAGTAACCCTGCTCATTGA
AGATCTTGTGCAACTCATCTTGGACCGTGCTGTGTCCTCCTGCATTGTCG
GGGCTAACGCGCTGGATGACTTCCATGAACGTTTCGTGAAAGTCCTCCAA
TGTAAAACTAGGAAATCCCAGCTGAACGAGCTTCTCCTTGGACTCCTCGG
CCAGTTTTTTGAACTCCTGGTAGGCACTGGTGTTTGAGATCAAGTACTCC
AAGTAGGAGTAGGCGAAGGCTCGGAAGAAACAATTGCCATCGGGGCGGGT
GCGGCGAATGAACTTGTACTTTTTGGACAGATCCTGGATCTTGGCGGTGA
AGATCTCGTCGCCACTGTATTCCGCATACAAGCAGGTGAGTGGCAACTGC
TCGCTGACCAAGGGAGTTGTGTCGCTGATCTCTTTTTCAATATCCCGTTT
CTGCTGAATTATTAGTTCGTCGCGATTGCCATCATTATGGGTAAACGGCT
CCATGTCGACTGATAACT

BO06474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-PA 789 CG4968-RA 1..786 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 986 CG4968-RA 122..909 806..19 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10307557..10307968 430..19 2060 100 Minus
2L 23513712 2L 10307192..10307493 731..430 1510 100 Minus
2L 23513712 2L 10307043..10307119 806..730 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:48:15 has no hits.

BO06474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:39 Download gff for BO06474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 16..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:43 Download gff for BO06474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 16..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:20 Download gff for BO06474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..915 11..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:54 Download gff for BO06474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..915 11..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:54 Download gff for BO06474.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10307039..10307119 730..811 96 -> Minus
2L 10307194..10307493 430..729 100 -> Minus
2L 10307558..10307974 11..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:20 Download gff for BO06474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10307039..10307119 730..811 96 -> Minus
arm_2L 10307194..10307493 430..729 100 -> Minus
arm_2L 10307558..10307974 11..429 99   Minus

BO06474.5prime Sequence

818 bp (795 high quality bases) assembled on 2005-12-03

> BO06474.5prime
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATGGCAGCTTTCTAGACC

BO06474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-PA 789 CG4968-RA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 986 CG4968-RA 122..909 15..802 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10307557..10307968 391..802 2060 100 Plus
2L 23513712 2L 10307192..10307493 90..391 1510 100 Plus
2L 23513712 2L 10307043..10307119 15..91 385 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:48:37 has no hits.

BO06474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:40 Download gff for BO06474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:45 Download gff for BO06474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:30 Download gff for BO06474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..915 10..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:57 Download gff for BO06474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..915 10..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:57 Download gff for BO06474.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10307039..10307119 10..91 96 -> Plus
2L 10307194..10307493 92..391 100 -> Plus
2L 10307558..10307974 392..810 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:30 Download gff for BO06474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10307039..10307119 10..91 96 -> Plus
arm_2L 10307194..10307493 92..391 100 -> Plus
arm_2L 10307558..10307974 392..810 99   Plus

BO06474.complete Sequence

820 bp (820 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630413

> BO06474.complete
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATGCAAGCTTTCTAGACCAT

BO06474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 789 CG4968-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 986 CG4968-RA 122..909 15..802 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10307557..10307968 391..802 2060 100 Plus
2L 23513712 2L 10307192..10307493 90..391 1510 100 Plus
2L 23513712 2L 10307043..10307119 15..91 385 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:38:42 has no hits.

BO06474.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:26 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 1..789 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:20 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 137..934 10..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:29 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 124..909 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:26 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 137..934 10..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:34 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 124..909 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:34 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10307045..10307119 17..91 100 -> Plus
2L 10307194..10307493 92..391 100 -> Plus
2L 10307558..10307968 392..804 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:29 Download gff for BO06474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10307045..10307119 17..91 100 -> Plus
arm_2L 10307194..10307493 92..391 100 -> Plus
arm_2L 10307558..10307968 392..804 99   Plus

BO06474.pep Sequence

Translation from 16 to 820

> BO06474.pep
MEPFTHNDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDE
IFTAKIQDLSKKYKFIRRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKK
LAEESKEKLVQLGFPSFTLEDFHETFMEVIQRVSPDNAGGHSTVQDELHK
IFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEGDLTIEAFRHLEVEP
MYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPRIYLI
YRPGHYDILYPNASFLDH

BO06474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-PA 262 CG4968-PA 1..262 1..262 1380 100 Plus