Clone Sequence Records
BO06475.3prime Sequence
557 bp (556 high quality bases) assembled on 2005-12-03
> BO06475.3prime
ATGGTCTAGAAAGCTTGCATTCATATCTATATGTTCCAGTCGTACAGGCT
GCGTGTACGGTATGACCGACTTTTTGTTGACGTCCCTGGATAAGGCCTTT
CTCATGTCGTACGCATCCTCGTCCTGGTCGCCGGAGTAGTACTCAAGTAT
GGTGCGGTATATGATGTAGCCAAGGTTCGTGTACATGTTTATTGCCACCT
GGTTGCTCTTCCTCACAAAAAGATCCACAAAGTATGCTCGCTTTTTCTCC
GAAATGTCCTCCAGGAAACTCATGAGCAGCGCAGCCAGACCAAGGCGCCG
GTAGTCGGGCGAGACGGTCAGCGCAGTCACGTGTCCGTGCCAGTTGTCCA
GGTGTCCCTCCACCTTGCCCATGATGTAGCCCATTATTTGTCCGCTGGGC
GACTCCGCAAGCTGAAAGTACTCCGGCCACTTGGCCAGGTACTGGGTGTA
GAAGGACAGCCCGTAGGTCTCCGTAAGTGGGTCAAAGTTTACATTGTTGA
ACTTAAAGAGGTCGTCGCAGGTGAAGGGTCGCAACGTGGTCATGTCGACT
GATAACT
BO06475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14222-PA | 528 | CG14222-RA | 1..525 | 543..19 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 1247 | CG14222-RD | 110..634 | 543..19 | 2625 | 100 | Minus |
NAA20-RC | 1242 | CG14222-RC | 110..634 | 543..19 | 2625 | 100 | Minus |
NAA20-RA | 1233 | CG14222-RA | 110..634 | 543..19 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19622335..19622471 | 108..244 | 685 | 100 | Plus |
X | 23542271 | X | 19622537..19622666 | 245..374 | 650 | 100 | Plus |
X | 23542271 | X | 19622729..19622844 | 375..490 | 580 | 100 | Plus |
X | 23542271 | X | 19622176..19622265 | 19..108 | 450 | 100 | Plus |
X | 23542271 | X | 19622913..19622965 | 491..543 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:01:11 has no hits.
BO06475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:41 Download gff for
BO06475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:46 Download gff for
BO06475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:53 Download gff for
BO06475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..634 | 19..543 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:55 Download gff for
BO06475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..634 | 19..543 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:55 Download gff for
BO06475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19622176..19622264 | 19..107 | 100 | <- | Plus |
X | 19622335..19622471 | 108..244 | 100 | <- | Plus |
X | 19622537..19622666 | 245..374 | 100 | <- | Plus |
X | 19622729..19622844 | 375..490 | 100 | <- | Plus |
X | 19622913..19622965 | 491..543 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:53 Download gff for
BO06475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19516209..19516297 | 19..107 | 100 | <- | Plus |
arm_X | 19516368..19516504 | 108..244 | 100 | <- | Plus |
arm_X | 19516570..19516699 | 245..374 | 100 | <- | Plus |
arm_X | 19516762..19516877 | 375..490 | 100 | <- | Plus |
arm_X | 19516946..19516998 | 491..543 | 100 | | Plus |
BO06475.5prime Sequence
557 bp (556 high quality bases) assembled on 2005-12-03
> BO06475.5prime
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATGCAAGCTTT
CTAGACC
BO06475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14222-PA | 528 | CG14222-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 1247 | CG14222-RD | 110..634 | 17..541 | 2625 | 100 | Plus |
NAA20-RC | 1242 | CG14222-RC | 110..634 | 17..541 | 2625 | 100 | Plus |
NAA20-RA | 1233 | CG14222-RA | 110..634 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19622335..19622471 | 452..316 | 685 | 100 | Minus |
X | 23542271 | X | 19622537..19622666 | 315..186 | 650 | 100 | Minus |
X | 23542271 | X | 19622729..19622844 | 185..70 | 580 | 100 | Minus |
X | 23542271 | X | 19622176..19622265 | 541..452 | 450 | 100 | Minus |
X | 23542271 | X | 19622913..19622965 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:12:27 has no hits.
BO06475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:42 Download gff for
BO06475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:47 Download gff for
BO06475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-PA | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:21 Download gff for
BO06475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..634 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:32 Download gff for
BO06475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..634 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:32 Download gff for
BO06475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19622335..19622471 | 316..452 | 100 | <- | Minus |
X | 19622537..19622666 | 186..315 | 100 | <- | Minus |
X | 19622729..19622844 | 70..185 | 100 | <- | Minus |
X | 19622913..19622965 | 17..69 | 100 | | Minus |
X | 19622176..19622264 | 453..541 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:21 Download gff for
BO06475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19516209..19516297 | 453..541 | 100 | <- | Minus |
arm_X | 19516368..19516504 | 316..452 | 100 | <- | Minus |
arm_X | 19516570..19516699 | 186..315 | 100 | <- | Minus |
arm_X | 19516762..19516877 | 70..185 | 100 | <- | Minus |
arm_X | 19516946..19516998 | 17..69 | 100 | | Minus |
BO06475.complete Sequence
559 bp (559 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630414
> BO06475.complete
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATGCAAGCTTT
CTAGACCAT
BO06475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 528 | CG14222-PD | 1..525 | 17..541 | 2625 | 100 | Plus |
NAA20-RC | 528 | CG14222-PC | 1..525 | 17..541 | 2625 | 100 | Plus |
NAA20-RA | 528 | CG14222-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-RD | 1247 | CG14222-RD | 110..634 | 17..541 | 2625 | 100 | Plus |
NAA20-RC | 1242 | CG14222-RC | 110..634 | 17..541 | 2625 | 100 | Plus |
NAA20-RA | 1233 | CG14222-RA | 110..634 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19622335..19622471 | 452..316 | 685 | 100 | Minus |
X | 23542271 | X | 19622537..19622666 | 315..186 | 650 | 100 | Minus |
X | 23542271 | X | 19622729..19622844 | 185..70 | 580 | 100 | Minus |
X | 23542271 | X | 19622176..19622265 | 541..452 | 450 | 100 | Minus |
X | 23542271 | X | 19622913..19622965 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:40 has no hits.
BO06475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:27 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-RA | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:21 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-RA | 108..632 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:21 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..634 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:27 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14222-RA | 108..632 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:15 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NAA20-RA | 110..634 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:15 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19622173..19622264 | 453..543 | 97 | <- | Minus |
X | 19622335..19622471 | 316..452 | 100 | <- | Minus |
X | 19622537..19622666 | 186..315 | 100 | <- | Minus |
X | 19622729..19622844 | 70..185 | 100 | <- | Minus |
X | 19622913..19622965 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:21 Download gff for
BO06475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19516206..19516297 | 453..543 | 97 | <- | Minus |
arm_X | 19516368..19516504 | 316..452 | 100 | <- | Minus |
arm_X | 19516570..19516699 | 186..315 | 100 | <- | Minus |
arm_X | 19516762..19516877 | 70..185 | 100 | <- | Minus |
arm_X | 19516946..19516998 | 17..69 | 100 | | Minus |
BO06475.pep Sequence
Translation from 16 to 559
> BO06475.pep
MTTLRPFTCDDLFKFNNVNFDPLTETYGLSFYTQYLAKWPEYFQLAESPS
GQIMGYIMGKVEGHLDNWHGHVTALTVSPDYRRLGLAALLMSFLEDISEK
KRAYFVDLFVRKSNQVAINMYTNLGYIIYRTILEYYSGDQDEDAYDMRKA
LSRDVNKKSVIPYTQPVRLEHIDMNASFLDH
BO06475.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NAA20-PD | 175 | CG14222-PD | 1..175 | 1..175 | 929 | 100 | Plus |
NAA20-PC | 175 | CG14222-PC | 1..175 | 1..175 | 929 | 100 | Plus |
NAA20-PA | 175 | CG14222-PA | 1..175 | 1..175 | 929 | 100 | Plus |
NAA20-PB | 180 | CG14222-PB | 1..172 | 1..172 | 888 | 96.5 | Plus |
CG31851-PB | 204 | CG31851-PB | 1..167 | 1..160 | 343 | 40 | Plus |