Clone BO06475 Report

Search the DGRC for BO06475

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG14222-RA
Protein status:BO06475.pep: validated full length
Sequenced Size:559

Clone Sequence Records

BO06475.3prime Sequence

557 bp (556 high quality bases) assembled on 2005-12-03

> BO06475.3prime
ATGGTCTAGAAAGCTTGCATTCATATCTATATGTTCCAGTCGTACAGGCT
GCGTGTACGGTATGACCGACTTTTTGTTGACGTCCCTGGATAAGGCCTTT
CTCATGTCGTACGCATCCTCGTCCTGGTCGCCGGAGTAGTACTCAAGTAT
GGTGCGGTATATGATGTAGCCAAGGTTCGTGTACATGTTTATTGCCACCT
GGTTGCTCTTCCTCACAAAAAGATCCACAAAGTATGCTCGCTTTTTCTCC
GAAATGTCCTCCAGGAAACTCATGAGCAGCGCAGCCAGACCAAGGCGCCG
GTAGTCGGGCGAGACGGTCAGCGCAGTCACGTGTCCGTGCCAGTTGTCCA
GGTGTCCCTCCACCTTGCCCATGATGTAGCCCATTATTTGTCCGCTGGGC
GACTCCGCAAGCTGAAAGTACTCCGGCCACTTGGCCAGGTACTGGGTGTA
GAAGGACAGCCCGTAGGTCTCCGTAAGTGGGTCAAAGTTTACATTGTTGA
ACTTAAAGAGGTCGTCGCAGGTGAAGGGTCGCAACGTGGTCATGTCGACT
GATAACT

BO06475.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14222-PA 528 CG14222-RA 1..525 543..19 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 1247 CG14222-RD 110..634 543..19 2625 100 Minus
NAA20-RC 1242 CG14222-RC 110..634 543..19 2625 100 Minus
NAA20-RA 1233 CG14222-RA 110..634 543..19 2625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19622335..19622471 108..244 685 100 Plus
X 23542271 X 19622537..19622666 245..374 650 100 Plus
X 23542271 X 19622729..19622844 375..490 580 100 Plus
X 23542271 X 19622176..19622265 19..108 450 100 Plus
X 23542271 X 19622913..19622965 491..543 265 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:01:11 has no hits.

BO06475.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:41 Download gff for BO06475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 16..543 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:46 Download gff for BO06475.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 16..543 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:53 Download gff for BO06475.3prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..634 19..543 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:36:55 Download gff for BO06475.3prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..634 19..543 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:36:55 Download gff for BO06475.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19622176..19622264 19..107 100 <- Plus
X 19622335..19622471 108..244 100 <- Plus
X 19622537..19622666 245..374 100 <- Plus
X 19622729..19622844 375..490 100 <- Plus
X 19622913..19622965 491..543 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:53 Download gff for BO06475.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516209..19516297 19..107 100 <- Plus
arm_X 19516368..19516504 108..244 100 <- Plus
arm_X 19516570..19516699 245..374 100 <- Plus
arm_X 19516762..19516877 375..490 100 <- Plus
arm_X 19516946..19516998 491..543 100   Plus

BO06475.5prime Sequence

557 bp (556 high quality bases) assembled on 2005-12-03

> BO06475.5prime
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATGCAAGCTTT
CTAGACC

BO06475.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14222-PA 528 CG14222-RA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 1247 CG14222-RD 110..634 17..541 2625 100 Plus
NAA20-RC 1242 CG14222-RC 110..634 17..541 2625 100 Plus
NAA20-RA 1233 CG14222-RA 110..634 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19622335..19622471 452..316 685 100 Minus
X 23542271 X 19622537..19622666 315..186 650 100 Minus
X 23542271 X 19622729..19622844 185..70 580 100 Minus
X 23542271 X 19622176..19622265 541..452 450 100 Minus
X 23542271 X 19622913..19622965 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:12:27 has no hits.

BO06475.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:42 Download gff for BO06475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 17..544 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:47 Download gff for BO06475.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14222-PA 1..528 17..544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:21 Download gff for BO06475.5prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..634 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:32 Download gff for BO06475.5prime
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..634 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:32 Download gff for BO06475.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19622335..19622471 316..452 100 <- Minus
X 19622537..19622666 186..315 100 <- Minus
X 19622729..19622844 70..185 100 <- Minus
X 19622913..19622965 17..69 100   Minus
X 19622176..19622264 453..541 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:21 Download gff for BO06475.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516209..19516297 453..541 100 <- Minus
arm_X 19516368..19516504 316..452 100 <- Minus
arm_X 19516570..19516699 186..315 100 <- Minus
arm_X 19516762..19516877 70..185 100 <- Minus
arm_X 19516946..19516998 17..69 100   Minus

BO06475.complete Sequence

559 bp (559 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630414

> BO06475.complete
GAAGTTATCAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACC
TCTTTAAGTTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGG
CTGTCCTTCTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCT
TGCGGAGTCGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGG
AGGGACACCTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCG
CCCGACTACCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGA
GGACATTTCGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGA
AGAGCAACCAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATA
TACCGCACCATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTA
CGACATGAGAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATAC
CGTACACGCAGCCTGTACGACTGGAACATATAGATATGAATGCAAGCTTT
CTAGACCAT

BO06475.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 528 CG14222-PD 1..525 17..541 2625 100 Plus
NAA20-RC 528 CG14222-PC 1..525 17..541 2625 100 Plus
NAA20-RA 528 CG14222-PA 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-RD 1247 CG14222-RD 110..634 17..541 2625 100 Plus
NAA20-RC 1242 CG14222-RC 110..634 17..541 2625 100 Plus
NAA20-RA 1233 CG14222-RA 110..634 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19622335..19622471 452..316 685 100 Minus
X 23542271 X 19622537..19622666 315..186 650 100 Minus
X 23542271 X 19622729..19622844 185..70 580 100 Minus
X 23542271 X 19622176..19622265 541..452 450 100 Minus
X 23542271 X 19622913..19622965 69..17 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:34:40 has no hits.

BO06475.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:27 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 1..528 17..544 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:21 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 108..632 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:21 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..634 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:27 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
CG14222-RA 108..632 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:15 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
NAA20-RA 110..634 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:15 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
X 19622173..19622264 453..543 97 <- Minus
X 19622335..19622471 316..452 100 <- Minus
X 19622537..19622666 186..315 100 <- Minus
X 19622729..19622844 70..185 100 <- Minus
X 19622913..19622965 17..69 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:21 Download gff for BO06475.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19516206..19516297 453..543 97 <- Minus
arm_X 19516368..19516504 316..452 100 <- Minus
arm_X 19516570..19516699 186..315 100 <- Minus
arm_X 19516762..19516877 70..185 100 <- Minus
arm_X 19516946..19516998 17..69 100   Minus

BO06475.pep Sequence

Translation from 16 to 559

> BO06475.pep
MTTLRPFTCDDLFKFNNVNFDPLTETYGLSFYTQYLAKWPEYFQLAESPS
GQIMGYIMGKVEGHLDNWHGHVTALTVSPDYRRLGLAALLMSFLEDISEK
KRAYFVDLFVRKSNQVAINMYTNLGYIIYRTILEYYSGDQDEDAYDMRKA
LSRDVNKKSVIPYTQPVRLEHIDMNASFLDH

BO06475.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
NAA20-PD 175 CG14222-PD 1..175 1..175 929 100 Plus
NAA20-PC 175 CG14222-PC 1..175 1..175 929 100 Plus
NAA20-PA 175 CG14222-PA 1..175 1..175 929 100 Plus
NAA20-PB 180 CG14222-PB 1..172 1..172 888 96.5 Plus
CG31851-PB 204 CG31851-PB 1..167 1..160 343 40 Plus