Clone Sequence Records
BO06478.3prime Sequence
644 bp (643 high quality bases) assembled on 2005-12-03
> BO06478.3prime
ATGGTCTAGAAAGCTTGCACGCCGTTCCCCCTTAAGGCCACCTCGTCCTC
CACCTCCACGGCCGCCACGGGTGCCAGGTTTCGTTGTCGTTTGGGGTGCG
ATTGCTGGCGCCGCAGCAGGAGCTGTGGTCACGGCGCTCTGGGTGGCGGG
AGCACCTGGTGCAGCAGCCACCGCGGGCTGTGGAATGCCCGTGGCACCAC
CCTTAGCGGGCAAGCCAGGAGCACCACCACCGGCCGGAAGTCCCGCCGGA
GTAGCAGCAGGATTTGCCACCGCCTGCTGCTCCGCCCGTTTCGGTTCACT
CATATTGACGCTCTCGTTGAAGACCATGCAGTACTCGCCGATCTTGAACA
CCTCGCCGTTCTTTCCGGAATAAAGGGTCAGACAATGCCTCCAGATGGAG
GCGTAGCCCTTTGTCAGTCTGACAATATCACCGGGTGCTATCAGTTTGCC
CGGCTCGTCCCAAATCGAAACATTGATGCAGGCCGTAGGATCGCCCACCT
TGAAGTTCCTCACTTCGCGGTTTTCTTTTGTAACGGTGGCCACGCCCACT
TCCAGGACAATAAAGATAACATTGATGTTCTTCAGACCCGGCTTTATGTC
CTTAATAGGAATGCATTCCACGTTATACATGTCGACTGATAACT
BO06478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-PA | 615 | CG5181-RA | 1..612 | 630..19 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-RA | 1214 | CG5181-RA | 106..717 | 630..19 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7409030..7409512 | 19..501 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 7409568..7409704 | 494..630 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:49:01 has no hits.
BO06478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:47 Download gff for
BO06478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:54 Download gff for
BO06478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:24 Download gff for
BO06478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 96..720 | 15..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:01 Download gff for
BO06478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 96..720 | 15..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:01 Download gff for
BO06478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7409024..7409509 | 14..498 | 99 | <- | Plus |
| 2L | 7409573..7409710 | 499..639 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:24 Download gff for
BO06478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7409024..7409509 | 14..498 | 99 | <- | Plus |
| arm_2L | 7409573..7409710 | 499..639 | 97 | | Plus |
BO06478.5prime Sequence
644 bp (643 high quality bases) assembled on 2005-12-03
> BO06478.5prime
GAAGTTATCAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACA
TAAAGCCGGGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTG
GGCGTGGCCACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGT
GGGCGATCCTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCA
AACTGATAGCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCC
ATCTGGAGGCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTT
CAAGATCGGCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTG
AACCGAAACGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCG
GCGGGACTTCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGG
TGCCACGGGCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCG
CCACCCAGAGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCA
CCCCAAACGACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGG
ACGAGGTGGCCTTAAGGGGGAACGGCGTGCAAGCTTTCTAGACC
BO06478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-PA | 615 | CG5181-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-RA | 1214 | CG5181-RA | 106..717 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7409030..7409512 | 628..146 | 2415 | 100 | Minus |
| 2L | 23513712 | 2L | 7409568..7409704 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:17:21 has no hits.
BO06478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:48 Download gff for
BO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:23:56 Download gff for
BO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:47 Download gff for
BO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 96..720 | 8..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:50 Download gff for
BO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 96..720 | 8..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:50 Download gff for
BO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7409024..7409509 | 149..633 | 99 | <- | Minus |
| 2L | 7409573..7409710 | 8..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:47 Download gff for
BO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7409024..7409509 | 149..633 | 99 | <- | Minus |
| arm_2L | 7409573..7409710 | 8..148 | 97 | | Minus |
BO06478.complete Sequence
646 bp (646 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630417
> BO06478.complete
GAAGTTATCAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACA
TAAAGCCGGGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTG
GGCGTGGCCACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGT
GGGCGATCCTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCA
AACTGATAGCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCC
ATCTGGAGGCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTT
CAAGATCGGCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTG
AACCGAAACGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCG
GCGGGACTTCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGG
TGCCACGGGCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCG
CCACCCAGAGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCA
CCCCAAACGACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGG
ACGAGGTGGCCTTAAGGGGGAACGGCGTGCAAGCTTTCTAGACCAT
BO06478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-RA | 615 | CG5181-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-RA | 1214 | CG5181-RA | 106..717 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7409030..7409512 | 628..146 | 2415 | 100 | Minus |
| 2L | 23513712 | 2L | 7409568..7409704 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:20:07 has no hits.
BO06478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:22 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:40 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 76..687 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:06 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 106..717 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:22 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 66..690 | 8..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:40 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 106..717 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:40 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7409028..7409509 | 149..630 | 99 | <- | Minus |
| 2L | 7409573..7409704 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:06 Download gff for
BO06478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7409028..7409509 | 149..630 | 99 | <- | Minus |
| arm_2L | 7409573..7409704 | 17..148 | 100 | | Minus |
BO06478.pep Sequence
Translation from 16 to 646
> BO06478.pep
MYNVECIPIKDIKPGLKNINVIFIVLEVGVATVTKENREVRNFKVGDPTA
CINVSIWDEPGKLIAPGDIVRLTKGYASIWRHCLTLYSGKNGEVFKIGEY
CMVFNESVNMSEPKRAEQQAVANPAATPAGLPAGGGAPGLPAKGGATGIP
QPAVAAAPGAPATQSAVTTAPAAAPAIAPQTTTKPGTRGGRGGGGRGGLK
GERRASFLDH
BO06478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-PA | 204 | CG5181-PA | 1..204 | 1..204 | 1071 | 100 | Plus |
