Clone Sequence Records
BO06480.5prime Sequence
695 bp (694 high quality bases) assembled on 2005-12-03
> BO06480.5prime
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGGCAAGCTTTCTAGACC
BO06480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-PB | 666 | CG9172-RB | 1..663 | 17..679 | 3315 | 100 | Plus |
CG9172-PA | 666 | CG9172-RA | 1..663 | 17..679 | 3315 | 100 | Plus |
CG2014-PA | 639 | CG2014-RA | 256..338 | 299..381 | 190 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 1282 | CG9172-RC | 77..741 | 15..679 | 3325 | 100 | Plus |
CG9172-RA | 909 | CG9172-RA | 80..744 | 15..679 | 3325 | 100 | Plus |
CG9172-RB | 897 | CG9172-RB | 68..732 | 15..679 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15986014..15986678 | 679..15 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 29516034..29516480 | 233..679 | 1080 | 82.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:12:40 has no hits.
BO06480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:52 Download gff for
BO06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:02 Download gff for
BO06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:26 Download gff for
BO06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..736 | 5..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:43 Download gff for
BO06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..736 | 5..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:43 Download gff for
BO06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15986010..15986690 | 5..684 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:26 Download gff for
BO06480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15880043..15880723 | 5..684 | 99 | | Minus |
BO06480.3prime Sequence
695 bp (694 high quality bases) assembled on 2005-12-03
> BO06480.3prime
ATGGTCTAGAAAGCTTGCCTTCCTATACCACATCTGGAGCGTCTTCATCC
GCTTAACCTTCTTCTGCAGCTGCAAAACGCCGTACATGAGCGCCTCGGCG
GTTGGCGGACAACCGGGTACGTATATGTCGACGGGGATTATCCTATCGCA
GCCACGGACGACGGAGTACGAGTAATGGTAGTAGCCGCCGCCGTTGGCAC
AGCTGCCCATGGAGATGACCCAACGTGGCTCGGGCATTTGGTCGTAGACC
TTTCGCAGGGCCGGTGCCATTTTGTTGGTCAGCGTGCCAGCGACGATGAT
GACATCGGCCTGACGTGGAGATGCACGGAACACAACACCATATCGATCCA
TGTCGTAACGCGGAGCAGCGATGTGCATCATTTCGACGGCACAGCAGGCC
AAACCGAAAGTCAGTGGCCAGATCGAGCCCTTGCGACCCCAGTTGAGCAG
ATCGTCCAGTCTGGCCAGTGACCACTCCGCAACGGAGGACTGTTTGGTGC
CGAACGGAGAGTAGCCCTTCTTGGGCAGATTTTGGGCCACTTCGGCAACT
GGAAGCGTTTGTTGTTGGCGCACCAGGGCCAAATTCAGAGCGGGCAGCGC
CGAAATCGACGCATTCGGTGTCTGAGTCGCCTTTTGGAGAGCCCGGGACA
GGGTCGATGACATCATCGCCGAACGCAGCATGTCGACTGATAACT
BO06480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-PB | 666 | CG9172-RB | 1..663 | 681..19 | 3315 | 100 | Minus |
CG9172-PA | 666 | CG9172-RA | 1..663 | 681..19 | 3315 | 100 | Minus |
CG2014-PA | 639 | CG2014-RA | 256..338 | 399..317 | 190 | 89.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 1282 | CG9172-RC | 77..741 | 683..19 | 3325 | 100 | Minus |
CG9172-RA | 909 | CG9172-RA | 80..744 | 683..19 | 3325 | 100 | Minus |
CG9172-RB | 897 | CG9172-RB | 68..732 | 683..19 | 3325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15986014..15986678 | 19..683 | 3325 | 100 | Plus |
3R | 32079331 | 3R | 29516034..29516480 | 465..19 | 1080 | 82.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:01:22 has no hits.
BO06480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:51 Download gff for
BO06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:00 Download gff for
BO06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:55 Download gff for
BO06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..736 | 14..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:27 Download gff for
BO06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..736 | 14..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:27 Download gff for
BO06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15986010..15986690 | 14..693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:55 Download gff for
BO06480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15880043..15880723 | 14..693 | 99 | | Plus |
BO06480.complete Sequence
697 bp (697 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630418
> BO06480.complete
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGGCAAGCTTTCTAGACCAT
BO06480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 666 | CG9172-PC | 1..663 | 17..679 | 3315 | 100 | Plus |
CG9172-RA | 666 | CG9172-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
CG9172-RB | 666 | CG9172-PB | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 1282 | CG9172-RC | 77..741 | 15..679 | 3325 | 100 | Plus |
CG9172-RA | 909 | CG9172-RA | 80..744 | 15..679 | 3325 | 100 | Plus |
CG9172-RB | 897 | CG9172-RB | 68..732 | 15..679 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15986014..15986678 | 679..15 | 3325 | 100 | Minus |
3R | 32079331 | 3R | 29516034..29516480 | 233..679 | 1080 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:15:20 has no hits.
BO06480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:16 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:02 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RA | 19..698 | 6..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:15 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 70..732 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:16 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RA | 19..698 | 6..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:24 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 70..732 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:24 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15986012..15986676 | 17..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:15 Download gff for
BO06480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15880045..15880709 | 17..681 | 99 | | Minus |
BO06480.pep Sequence
Translation from 16 to 697
> BO06480.pep
MLRSAMMSSTLSRALQKATQTPNASISALPALNLALVRQQQTLPVAEVAQ
NLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVE
MMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMP
EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY
GVLQLQKKVKRMKTLQMWYRKASFLDH
BO06480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-PC | 221 | CG9172-PC | 1..221 | 1..221 | 1158 | 100 | Plus |
CG9172-PA | 221 | CG9172-PA | 1..221 | 1..221 | 1158 | 100 | Plus |
CG9172-PB | 221 | CG9172-PB | 1..221 | 1..221 | 1158 | 100 | Plus |
CG2014-PB | 212 | CG2014-PB | 27..212 | 37..221 | 873 | 85.5 | Plus |
CG2014-PA | 212 | CG2014-PA | 27..212 | 37..221 | 873 | 85.5 | Plus |