Clone BO06480 Report

Search the DGRC for BO06480

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9172-RA
Protein status:BO06480.pep: validated full length
Sequenced Size:697

Clone Sequence Records

BO06480.5prime Sequence

695 bp (694 high quality bases) assembled on 2005-12-03

> BO06480.5prime
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGGCAAGCTTTCTAGACC

BO06480.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-PB 666 CG9172-RB 1..663 17..679 3315 100 Plus
CG9172-PA 666 CG9172-RA 1..663 17..679 3315 100 Plus
CG2014-PA 639 CG2014-RA 256..338 299..381 190 89.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 1282 CG9172-RC 77..741 15..679 3325 100 Plus
CG9172-RA 909 CG9172-RA 80..744 15..679 3325 100 Plus
CG9172-RB 897 CG9172-RB 68..732 15..679 3325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15986014..15986678 679..15 3325 100 Minus
3R 32079331 3R 29516034..29516480 233..679 1080 82.8 Plus
Blast to na_te.dros performed on 2015-02-13 12:12:40 has no hits.

BO06480.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:52 Download gff for BO06480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 17..683 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:02 Download gff for BO06480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:26 Download gff for BO06480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..736 5..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:43 Download gff for BO06480.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..736 5..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:43 Download gff for BO06480.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15986010..15986690 5..684 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:26 Download gff for BO06480.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15880043..15880723 5..684 99   Minus

BO06480.3prime Sequence

695 bp (694 high quality bases) assembled on 2005-12-03

> BO06480.3prime
ATGGTCTAGAAAGCTTGCCTTCCTATACCACATCTGGAGCGTCTTCATCC
GCTTAACCTTCTTCTGCAGCTGCAAAACGCCGTACATGAGCGCCTCGGCG
GTTGGCGGACAACCGGGTACGTATATGTCGACGGGGATTATCCTATCGCA
GCCACGGACGACGGAGTACGAGTAATGGTAGTAGCCGCCGCCGTTGGCAC
AGCTGCCCATGGAGATGACCCAACGTGGCTCGGGCATTTGGTCGTAGACC
TTTCGCAGGGCCGGTGCCATTTTGTTGGTCAGCGTGCCAGCGACGATGAT
GACATCGGCCTGACGTGGAGATGCACGGAACACAACACCATATCGATCCA
TGTCGTAACGCGGAGCAGCGATGTGCATCATTTCGACGGCACAGCAGGCC
AAACCGAAAGTCAGTGGCCAGATCGAGCCCTTGCGACCCCAGTTGAGCAG
ATCGTCCAGTCTGGCCAGTGACCACTCCGCAACGGAGGACTGTTTGGTGC
CGAACGGAGAGTAGCCCTTCTTGGGCAGATTTTGGGCCACTTCGGCAACT
GGAAGCGTTTGTTGTTGGCGCACCAGGGCCAAATTCAGAGCGGGCAGCGC
CGAAATCGACGCATTCGGTGTCTGAGTCGCCTTTTGGAGAGCCCGGGACA
GGGTCGATGACATCATCGCCGAACGCAGCATGTCGACTGATAACT

BO06480.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-PB 666 CG9172-RB 1..663 681..19 3315 100 Minus
CG9172-PA 666 CG9172-RA 1..663 681..19 3315 100 Minus
CG2014-PA 639 CG2014-RA 256..338 399..317 190 89.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 1282 CG9172-RC 77..741 683..19 3325 100 Minus
CG9172-RA 909 CG9172-RA 80..744 683..19 3325 100 Minus
CG9172-RB 897 CG9172-RB 68..732 683..19 3325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15986014..15986678 19..683 3325 100 Plus
3R 32079331 3R 29516034..29516480 465..19 1080 82.8 Minus
Blast to na_te.dros performed on 2015-02-13 16:01:22 has no hits.

BO06480.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:51 Download gff for BO06480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 15..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:00 Download gff for BO06480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 15..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:55 Download gff for BO06480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..736 14..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:37:27 Download gff for BO06480.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..736 14..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:37:27 Download gff for BO06480.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15986010..15986690 14..693 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:55 Download gff for BO06480.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15880043..15880723 14..693 99   Plus

BO06480.complete Sequence

697 bp (697 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630418

> BO06480.complete
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGGCAAGCTTTCTAGACCAT

BO06480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 666 CG9172-PC 1..663 17..679 3315 100 Plus
CG9172-RA 666 CG9172-PA 1..663 17..679 3315 100 Plus
CG9172-RB 666 CG9172-PB 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 1282 CG9172-RC 77..741 15..679 3325 100 Plus
CG9172-RA 909 CG9172-RA 80..744 15..679 3325 100 Plus
CG9172-RB 897 CG9172-RB 68..732 15..679 3325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15986014..15986678 679..15 3325 100 Minus
3R 32079331 3R 29516034..29516480 233..679 1080 82.8 Plus
Blast to na_te.dros performed on 2014-11-27 15:15:20 has no hits.

BO06480.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:16 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RA 1..666 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:02 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RA 19..698 6..684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:15 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 70..732 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:16 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RA 19..698 6..684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:24 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 70..732 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:24 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
X 15986012..15986676 17..681 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:15 Download gff for BO06480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15880045..15880709 17..681 99   Minus

BO06480.pep Sequence

Translation from 16 to 697

> BO06480.pep
MLRSAMMSSTLSRALQKATQTPNASISALPALNLALVRQQQTLPVAEVAQ
NLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVE
MMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMP
EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY
GVLQLQKKVKRMKTLQMWYRKASFLDH

BO06480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-PC 221 CG9172-PC 1..221 1..221 1158 100 Plus
CG9172-PA 221 CG9172-PA 1..221 1..221 1158 100 Plus
CG9172-PB 221 CG9172-PB 1..221 1..221 1158 100 Plus
CG2014-PB 212 CG2014-PB 27..212 37..221 873 85.5 Plus
CG2014-PA 212 CG2014-PA 27..212 37..221 873 85.5 Plus