Clone Sequence Records
BO06481.3prime Sequence
849 bp (756 high quality bases) assembled on 2005-12-03
> BO06481.3prime
ATGGTCTAGAAAGCTTGCGCTAGCGATCTTAACTATTTCACCCTCGACTT
CCAAGGAATCGGCGAGCTTAAGTTGCTTATCAAAGCGTTTCTGAAACTTC
TTCGCCTGTTTTTCGTTCAAATCCTCGACGGACAGATGCTTGGCATACTT
CTTGAGCAGCTTCTTACGAAGTTTTTCCAGGAAAATGCCATCTGCTTGCT
TGGTAACGATCTTAGTTAGCTGGGCGGCCCAATCAAAGTCGCTGGTCACG
CCGTTGGAGGTCTCCTCGGCAGCAGCATCTTCTGTGGTCTCCACTTTGGC
CTTCTTCTTGGGTGGCGCCTCTTCCTCGACCTCTGCCTTCTGCTTCTGCT
GTATTTCAGCAATCTTTTCCGCCTTGGCTCTGGCCAGCTCCGCTTGCTTT
GCCTCCTTCATCTTGTTCAGCTCCTTCTCGAGAATATCCCACACCTGGGT
GGCCTGGTTGCGGGGCATGCGCATGCAGTTTCCCACGAAGTTTTCGAACT
TAGCCTTCTTGCGGGGCACGTTATCGACGCTCTGGAGCTTTTGGAAGGCG
GATCGAACGGCTGGAGTTAAATTGTACTCGCTGCTGTCGAGGATCGACCG
AATGATGTCCATCCAACTCTCTTGCTTTTGAGCGTTCTTGTTGCGGGGCT
CCTTGGCGGCAAAGCCTTGGCTTTGGCTGGCGTACTTCTGGGCCTCTGAG
ATGCACTTAATGTGTGCCACATACTCCTCGCCATAGAAGTCCTTTANGCA
GTCCATGCAGGACACGTTCTTGTCTTTGCCGCGACAGCGCGTCTGGTAGT
GCTTTTCCCCGGCGGTTTCTTTACCGACTCGCCGCAGATGTTGCACGTG
BO06481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-PA | 846 | CG12909-RA | 54..843 | 808..19 | 3906 | 99.7 | Minus |
| CG12909-PA | 846 | CG12909-RA | 12..48 | 849..813 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 1031 | CG12909-RA | 134..965 | 849..19 | 4094 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10310246..10311077 | 849..19 | 4069 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:35:56 has no hits.
BO06481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:53 Download gff for
BO06481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 12..846 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:03 Download gff for
BO06481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 12..846 | 18..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:59:10 Download gff for
BO06481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 134..969 | 13..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:40 Download gff for
BO06481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 134..969 | 13..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:40 Download gff for
BO06481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10310246..10311081 | 13..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:59:10 Download gff for
BO06481.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6197751..6198586 | 13..849 | 99 | | Minus |
BO06481.5prime Sequence
821 bp (731 high quality bases) assembled on 2005-12-03
> BO06481.5prime
GAAGTTATCAGTCGACATGGTCTTCTTCACGTGCAACATCTGCGGCGAGT
CGGTAAAGAAACCGGCGGTGGAAAAGCACTACCAGACGCGCTGTCGCGGC
AAAGACAAGAACGTGTCCTGCATGGACTGCCTAAAGGACTTCTATGGCGA
GGAGTATGTGGCACACATTAAGTGCATCTCAGAGGCCCAGAAGTACGCCA
GCCAAAGCCAAGGCTTTGCCGCCAAGGAGCCCCGCAACAAGAACGCTCAA
AAGCAAGAGAGTTGGATGGACATCATTCGGTCGATCCTCGACAGCAGCGA
GTACAATTTAACTCCAGCCGTTCGATCCGCCTTCCAAAAGCTCCAGAGCG
TCGATAACGTGCCCCGCAAGAAGGCTAAGTTCGAAAACTTCGTGGGAAAC
TGCATGCGCATGCCCCGCAACCAGGCCACCCAGGTGTGGGATATTCTCGA
GAAGGAGCTGAACAAGATGAAGGAGGCAAAGCAAGCGGAGCTGGCCAGAG
CCAAGGCGGAAAAGATTGCTGAAATACAGCAGAAGCAGAAGGCAGAGGTC
GAGGAAGAGGCGCCACCCAAGAAGAAGGCCAAAGTGGAGACCACAGAAGA
TGCTGCTGCCGAGGAGACCTCCAACGGCGTGACCAGCGACTTTGATTGGG
CCGCCCAGCTAACTAAGATCGTTACCAAGCAAGCAGATGGCATTTTCCTG
GAAAAACTTCGTAAGAAGCTGCTCAAGAAGTATGCCCAGCATCTGTCCGT
CGAGGATTTGAACGAAAAACAGGCGAAGAAGTTTCAGAAACGCTTTGATA
AGCAACTTAAGCTCGCCGATT
BO06481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-PA | 846 | CG12909-RA | 1..805 | 17..821 | 3975 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 1031 | CG12909-RA | 122..927 | 16..821 | 4000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10310234..10311039 | 16..821 | 4000 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:49:21 has no hits.
BO06481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:54 Download gff for
BO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:05 Download gff for
BO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:25 Download gff for
BO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 119..927 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:04 Download gff for
BO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 119..927 | 9..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:04 Download gff for
BO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10310231..10311039 | 9..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:25 Download gff for
BO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6197736..6198544 | 9..821 | 99 | | Plus |
BO06481.complete Sequence
877 bp (877 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630419
> BO06481.complete
GAAGTTATCAGTCGACATGGTCTTCTTCACGTGCAACATCTGCGGCGAGT
CGGTAAAGAAACCGGCGGTGGAAAAGCACTACCAGACGCGCTGTCGCGGC
AAAGACAAGAACGTGTCCTGCATGGACTGCCTAAAGGACTTCTATGGCGA
GGAGTATGTGGCACACATTAAGTGCATCTCAGAGGCCCAGAAGTACGCCA
GCCAAAGCCAAGGCTTTGCCGCCAAGGAGCCCCGCAACAAGAACGCTCAA
AAGCAAGAGAGTTGGATGGACATCATTCGGTCGATCCTCGACAGCAGCGA
GTACAATTTAACTCCAGCCGTTCGATCCGCCTTCCAAAAGCTCCAGAGCG
TCGATAACGTGCCCCGCAAGAAGGCTAAGTTCGAAAACTTCGTGGGAAAC
TGCATGCGCATGCCCCGCAACCAGGCCACCCAGGTGTGGGATATTCTCGA
GAAGGAGCTGAACAAGATGAAGGAGGCAAAGCAAGCGGAGCTGGCCAGAG
CCAAGGCGGAAAAGATTGCTGAAATACAGCAGAAGCAGAAGGCAGAGGTC
GAGGAAGAGGCGCCACCCAAGAAGAAGGCCAAAGTGGAGACCACAGAAGA
TGCTGCTGCCGAGGAGACCTCCAACGGCGTGACCAGCGACTTTGATTGGG
CCGCCCAGCTAACTAAGATCGTTACCAAGCAAGCAGATGGCATTTTCCTG
GAAAAACTTCGTAAGAAGCTGCTCAAGAAGTATGCCAAGCATCTGTCCGT
CGAGGATTTGAACGAAAAACAGGCGAAGAAGTTTCAGAAACGCTTTGATA
AGCAACTTAAGCTCGCCGATTCCTTGGAAGTCGAGGGTGAAATAGTTAAG
ATCGCTAGCGCAAGCTTTCTAGACCAT
BO06481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 846 | CG12909-PA | 1..843 | 17..859 | 4200 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 1031 | CG12909-RA | 122..965 | 16..859 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10310234..10311077 | 16..859 | 4205 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:57:10 has no hits.
BO06481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:10 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 1..846 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:02 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 108..958 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:01 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 123..965 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:10 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 108..958 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:06 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 123..965 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:06 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10310235..10311077 | 17..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:01 Download gff for
BO06481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6197740..6198582 | 17..861 | 99 | | Plus |
BO06481.pep Sequence
Translation from 16 to 877
> BO06481.pep
MVFFTCNICGESVKKPAVEKHYQTRCRGKDKNVSCMDCLKDFYGEEYVAH
IKCISEAQKYASQSQGFAAKEPRNKNAQKQESWMDIIRSILDSSEYNLTP
AVRSAFQKLQSVDNVPRKKAKFENFVGNCMRMPRNQATQVWDILEKELNK
MKEAKQAELARAKAEKIAEIQQKQKAEVEEEAPPKKKAKVETTEDAAAEE
TSNGVTSDFDWAAQLTKIVTKQADGIFLEKLRKKLLKKYAKHLSVEDLNE
KQAKKFQKRFDKQLKLADSLEVEGEIVKIASASFLDH
BO06481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-PA | 281 | CG12909-PA | 1..281 | 1..281 | 1438 | 100 | Plus |
