Clone Sequence Records
BO06482.3prime Sequence
443 bp (442 high quality bases) assembled on 2005-12-03
> BO06482.3prime
ATGGTCTTGAAAGCTTGCCCGAATGTGACGCTGACGGATCAGGACGCGAG
CATGATGGATGGACTTGGCAAGTCCCAGCTTGAACACCTGCGTCTGCAGA
CGACGCTCCAAGAAGTCCTCAATCTTCAGACCCAGCACGTAATCGAGCTT
CATGCGGGACTCGTCCAGGACACCGATACGGACCAGACGGCGCAGCAGGG
CATTACCCTGGAACAGACGCTTCTCGTCCTTCTCGTCGAGGGTCAGCAGC
TCACGAGCGGCCTTACGGATCTTAGCCAGGGCGTACTTGACGCGCCACAC
TTCGCGCTTGTTGCGCAGACCATACTCGCCGATGATCTTCAACTCCTGGT
CCAGACGCGCCTTCTCATAGGGGCGACGGGGAGTCACGTAGGTCTTCGAG
AAGACCGAGGGTATGCGGCCGTTCACCATGTCGACTGATAACT
BO06482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3395-PB | 414 | RpS9-RB | 1..411 | 429..19 | 2055 | 100 | Minus |
CG3395-PA | 588 | RpS9-RA | 1..410 | 429..20 | 2050 | 100 | Minus |
CG3395-PD | 588 | RpS9-RD | 1..410 | 429..20 | 2050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 917 | CG3395-RB | 55..466 | 430..19 | 2060 | 100 | Minus |
RpS9-RE | 803 | CG3395-RE | 27..437 | 430..20 | 2055 | 100 | Minus |
RpS9-RD | 706 | CG3395-RD | 27..437 | 430..20 | 2055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 203..430 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 9510464..9510652 | 19..207 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:58:58 has no hits.
BO06482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:55 Download gff for
BO06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-PB | 1..414 | 15..429 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:06 Download gff for
BO06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3395-PB | 1..414 | 15..429 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:38 Download gff for
BO06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..469 | 15..430 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:31:27 Download gff for
BO06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..469 | 15..430 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:31:27 Download gff for
BO06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9510460..9510651 | 15..206 | 98 | <- | Plus |
3L | 9511056..9511279 | 207..430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:38 Download gff for
BO06482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503560..9503751 | 15..206 | 98 | <- | Plus |
arm_3L | 9504156..9504379 | 207..430 | 100 | | Plus |
BO06482.5prime Sequence
443 bp (442 high quality bases) assembled on 2005-12-03
> BO06482.5prime
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGGCAAGCTTTCAAGACC
BO06482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3395-PB | 414 | RpS9-RB | 1..411 | 17..427 | 2055 | 100 | Plus |
CG3395-PA | 588 | RpS9-RA | 1..410 | 17..426 | 2050 | 100 | Plus |
CG3395-PD | 588 | RpS9-RD | 1..410 | 17..426 | 2050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 917 | CG3395-RB | 55..466 | 16..427 | 2060 | 100 | Plus |
RpS9-RE | 803 | CG3395-RE | 27..437 | 16..426 | 2055 | 100 | Plus |
RpS9-RD | 706 | CG3395-RD | 27..437 | 16..426 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 243..16 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 9510464..9510652 | 427..239 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:27:43 has no hits.
BO06482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:56 Download gff for
BO06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-PB | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:07 Download gff for
BO06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3395-PB | 1..414 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:32 Download gff for
BO06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..469 | 16..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:57 Download gff for
BO06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..469 | 16..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:57 Download gff for
BO06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9510460..9510651 | 240..431 | 98 | <- | Minus |
3L | 9511056..9511279 | 16..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:32 Download gff for
BO06482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503560..9503751 | 240..431 | 98 | <- | Minus |
arm_3L | 9504156..9504379 | 16..239 | 100 | | Minus |
BO06482.complete Sequence
445 bp assembled on 2008-08-15
> BO06482.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGGCAAGCTTTCAAGACCAT
BO06482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 414 | CG3395-PB | 1..411 | 17..427 | 2055 | 100 | Plus |
RpS9-RE | 588 | CG3395-PE | 1..410 | 17..426 | 2050 | 100 | Plus |
RpS9-RD | 588 | CG3395-PD | 1..410 | 17..426 | 2050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 917 | CG3395-RB | 55..466 | 16..427 | 2060 | 100 | Plus |
RpS9-RE | 803 | CG3395-RE | 27..437 | 16..426 | 2055 | 100 | Plus |
RpS9-RD | 706 | CG3395-RD | 27..437 | 16..426 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 243..16 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 9510464..9510652 | 427..239 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:09:29 has no hits.
BO06482.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:09 Download gff for
BO06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 66..480 | 16..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:38 Download gff for
BO06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 56..466 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:14 Download gff for
BO06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 67..477 | 17..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:04 Download gff for
BO06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 56..466 | 17..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:04 Download gff for
BO06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9510462..9510651 | 240..429 | 98 | <- | Minus |
3L | 9511056..9511278 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:38 Download gff for
BO06482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503562..9503751 | 240..429 | 98 | <- | Minus |
arm_3L | 9504156..9504378 | 17..239 | 100 | | Minus |
BO06482.pep Sequence
Translation from 16 to 445
> BO06482.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRASFQDH
BO06482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-PE | 195 | CG3395-PE | 1..141 | 1..141 | 686 | 97.9 | Plus |
RpS9-PD | 195 | CG3395-PD | 1..141 | 1..141 | 686 | 97.9 | Plus |
RpS9-PA | 195 | CG3395-PA | 1..141 | 1..141 | 686 | 97.9 | Plus |
RpS9-PB | 137 | CG3395-PB | 1..137 | 1..137 | 685 | 100 | Plus |