Clone BO06482 Report

Search the DGRC for BO06482

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptRpS9-RB
Protein status:BO06482.pep: Imported from assembly
Sequenced Size:445

Clone Sequence Records

BO06482.3prime Sequence

443 bp (442 high quality bases) assembled on 2005-12-03

> BO06482.3prime
ATGGTCTTGAAAGCTTGCCCGAATGTGACGCTGACGGATCAGGACGCGAG
CATGATGGATGGACTTGGCAAGTCCCAGCTTGAACACCTGCGTCTGCAGA
CGACGCTCCAAGAAGTCCTCAATCTTCAGACCCAGCACGTAATCGAGCTT
CATGCGGGACTCGTCCAGGACACCGATACGGACCAGACGGCGCAGCAGGG
CATTACCCTGGAACAGACGCTTCTCGTCCTTCTCGTCGAGGGTCAGCAGC
TCACGAGCGGCCTTACGGATCTTAGCCAGGGCGTACTTGACGCGCCACAC
TTCGCGCTTGTTGCGCAGACCATACTCGCCGATGATCTTCAACTCCTGGT
CCAGACGCGCCTTCTCATAGGGGCGACGGGGAGTCACGTAGGTCTTCGAG
AAGACCGAGGGTATGCGGCCGTTCACCATGTCGACTGATAACT

BO06482.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3395-PB 414 RpS9-RB 1..411 429..19 2055 100 Minus
CG3395-PA 588 RpS9-RA 1..410 429..20 2050 100 Minus
CG3395-PD 588 RpS9-RD 1..410 429..20 2050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 917 CG3395-RB 55..466 430..19 2060 100 Minus
RpS9-RE 803 CG3395-RE 27..437 430..20 2055 100 Minus
RpS9-RD 706 CG3395-RD 27..437 430..20 2055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 203..430 1140 100 Plus
3L 28110227 3L 9510464..9510652 19..207 945 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:58:58 has no hits.

BO06482.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:55 Download gff for BO06482.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-PB 1..414 15..429 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:06 Download gff for BO06482.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3395-PB 1..414 15..429 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:38 Download gff for BO06482.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..469 15..430 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:31:27 Download gff for BO06482.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..469 15..430 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:31:27 Download gff for BO06482.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9510460..9510651 15..206 98 <- Plus
3L 9511056..9511279 207..430 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:38 Download gff for BO06482.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503560..9503751 15..206 98 <- Plus
arm_3L 9504156..9504379 207..430 100   Plus

BO06482.5prime Sequence

443 bp (442 high quality bases) assembled on 2005-12-03

> BO06482.5prime
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGGCAAGCTTTCAAGACC

BO06482.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3395-PB 414 RpS9-RB 1..411 17..427 2055 100 Plus
CG3395-PA 588 RpS9-RA 1..410 17..426 2050 100 Plus
CG3395-PD 588 RpS9-RD 1..410 17..426 2050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 917 CG3395-RB 55..466 16..427 2060 100 Plus
RpS9-RE 803 CG3395-RE 27..437 16..426 2055 100 Plus
RpS9-RD 706 CG3395-RD 27..437 16..426 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 243..16 1140 100 Minus
3L 28110227 3L 9510464..9510652 427..239 945 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:27:43 has no hits.

BO06482.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:56 Download gff for BO06482.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-PB 1..414 17..431 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:07 Download gff for BO06482.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3395-PB 1..414 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:32 Download gff for BO06482.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..469 16..431 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:57 Download gff for BO06482.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..469 16..431 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:57 Download gff for BO06482.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9510460..9510651 240..431 98 <- Minus
3L 9511056..9511279 16..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:32 Download gff for BO06482.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503560..9503751 240..431 98 <- Minus
arm_3L 9504156..9504379 16..239 100   Minus

BO06482.complete Sequence

445 bp assembled on 2008-08-15

> BO06482.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGGCAAGCTTTCAAGACCAT

BO06482.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 414 CG3395-PB 1..411 17..427 2055 100 Plus
RpS9-RE 588 CG3395-PE 1..410 17..426 2050 100 Plus
RpS9-RD 588 CG3395-PD 1..410 17..426 2050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 917 CG3395-RB 55..466 16..427 2060 100 Plus
RpS9-RE 803 CG3395-RE 27..437 16..426 2055 100 Plus
RpS9-RD 706 CG3395-RD 27..437 16..426 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 243..16 1140 100 Minus
3L 28110227 3L 9510464..9510652 427..239 945 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:09:29 has no hits.

BO06482.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:09 Download gff for BO06482.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 66..480 16..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:38 Download gff for BO06482.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 56..466 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:14 Download gff for BO06482.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 67..477 17..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:04 Download gff for BO06482.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 56..466 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:04 Download gff for BO06482.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9510462..9510651 240..429 98 <- Minus
3L 9511056..9511278 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:38 Download gff for BO06482.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503562..9503751 240..429 98 <- Minus
arm_3L 9504156..9504378 17..239 100   Minus

BO06482.pep Sequence

Translation from 16 to 445

> BO06482.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRASFQDH

BO06482.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-PE 195 CG3395-PE 1..141 1..141 686 97.9 Plus
RpS9-PD 195 CG3395-PD 1..141 1..141 686 97.9 Plus
RpS9-PA 195 CG3395-PA 1..141 1..141 686 97.9 Plus
RpS9-PB 137 CG3395-PB 1..137 1..137 685 100 Plus