Clone Sequence Records
BO06483.3prime Sequence
674 bp (673 high quality bases) assembled on 2005-12-03
> BO06483.3prime
ATGGTCTAGAAAGCTTGCCGCCTGAATCTCCTTATTTTTGTTTTGAGCGT
GGTCCCCGGTGGACTCAATTTGAGGTAGACCTTCGTTTTTCGATTTTAGG
CGCTCCTCATACTGCTCCTGGGTTAAAAGACTCGCCTTGATTGCATCGCA
GTTTTCGATTTTGGGCAGAAGAATGGCGAAGTAGCCGGCTCCCTCGGGGA
GTTGCTCCAGAAGCTTTGGCTCCTCCACAATGGCGGTGTTCACCTCTACC
AGCTTGCCCCGAATGCAGCTGGGCACCTTGTAAGTCCCTCCATTTGCTGT
GGTGAGCAGTGCCAAGGTGGACTCCGCCTGTAGGATCATTCCGCCCTTTT
TACCCTTTCCCTTGACCACATTCTGGCTGCGATCTACGTTCCCTATATCA
AAGTTGACCGATGAGATGCCTTGAGCTAGAGCAGGGTGCTCGGGAGCCAG
GCAAATCAGACAAATGCGATTGGAGTGGTAGAGCACTTGGTAGGGAACAT
CTCCCTTGAAGTAGTAATATCTGGTGAAAAAACGATCTACAACACTGGGG
TAATCCTCCTGGAAGCTATCTGTAATGGGAGCTACGAGCTTCCCGCAGAT
CTCCTGCTCCTCGTGCTCGAAGTAGAATGGCTCCAGTGGATCATCTGCTT
GTACTGACATGTCGACTGATAACT
BO06483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-PA | 645 | CG9288-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 1117 | CG9288-RA | 346..987 | 660..19 | 3210 | 100 | Minus |
CG42375-RA | 1117 | CG42375-RA | 346..987 | 660..19 | 3210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13780024..13780665 | 660..19 | 3210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:10:25 has no hits.
BO06483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:57 Download gff for
BO06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:09 Download gff for
BO06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:08 Download gff for
BO06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 342..987 | 19..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:04 Download gff for
BO06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 342..987 | 19..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:04 Download gff for
BO06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13780020..13780665 | 19..668 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:08 Download gff for
BO06483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9605742..9606387 | 19..668 | 99 | | Minus |
BO06483.5prime Sequence
674 bp (673 high quality bases) assembled on 2005-12-03
> BO06483.5prime
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGGCAAGCTTTCTAGACC
BO06483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-PA | 645 | CG9288-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 1117 | CG9288-RA | 346..987 | 17..658 | 3210 | 100 | Plus |
CG42375-RA | 1117 | CG42375-RA | 346..987 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13780024..13780665 | 17..658 | 3210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:30 has no hits.
BO06483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:58 Download gff for
BO06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:10 Download gff for
BO06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:34 Download gff for
BO06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 342..987 | 9..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:04 Download gff for
BO06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 342..987 | 9..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:04 Download gff for
BO06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13780020..13780665 | 9..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:34 Download gff for
BO06483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9605742..9606387 | 9..658 | 99 | | Plus |
BO06483.complete Sequence
676 bp (676 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630420
> BO06483.complete
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGGCAAGCTTTCTAGACCAT
BO06483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 645 | CG9288-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-RA | 1117 | CG9288-RA | 346..987 | 17..658 | 3210 | 100 | Plus |
CG42375-RA | 1117 | CG42375-RA | 346..987 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13780024..13780665 | 17..658 | 3210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:53:28 has no hits.
BO06483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:11 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:12 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 385..1030 | 9..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:20 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 346..987 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:11 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9288-RA | 385..1030 | 9..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:13 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42375-RA | 346..987 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:13 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13780024..13780665 | 17..660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:20 Download gff for
BO06483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9605746..9606387 | 17..660 | 99 | | Plus |
BO06483.pep Sequence
Translation from 16 to 676
> BO06483.pep
MSVQADDPLEPFYFEHEEQEICGKLVAPITDSFQEDYPSVVDRFFTRYYY
FKGDVPYQVLYHSNRICLICLAPEHPALAQGISSVNFDIGNVDRSQNVVK
GKGKKGGMILQAESTLALLTTANGGTYKVPSCIRGKLVEVNTAIVEEPKL
LEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEERLKSKNEGLPQIES
TGDHAQNKNKEIQAASFLDH
BO06483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9288-PA | 214 | CG9288-PA | 1..214 | 1..214 | 1114 | 100 | Plus |