Clone BO06483 Report

Search the DGRC for BO06483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG9288-RA
Protein status:BO06483.pep: validated full length
Sequenced Size:676

Clone Sequence Records

BO06483.3prime Sequence

674 bp (673 high quality bases) assembled on 2005-12-03

> BO06483.3prime
ATGGTCTAGAAAGCTTGCCGCCTGAATCTCCTTATTTTTGTTTTGAGCGT
GGTCCCCGGTGGACTCAATTTGAGGTAGACCTTCGTTTTTCGATTTTAGG
CGCTCCTCATACTGCTCCTGGGTTAAAAGACTCGCCTTGATTGCATCGCA
GTTTTCGATTTTGGGCAGAAGAATGGCGAAGTAGCCGGCTCCCTCGGGGA
GTTGCTCCAGAAGCTTTGGCTCCTCCACAATGGCGGTGTTCACCTCTACC
AGCTTGCCCCGAATGCAGCTGGGCACCTTGTAAGTCCCTCCATTTGCTGT
GGTGAGCAGTGCCAAGGTGGACTCCGCCTGTAGGATCATTCCGCCCTTTT
TACCCTTTCCCTTGACCACATTCTGGCTGCGATCTACGTTCCCTATATCA
AAGTTGACCGATGAGATGCCTTGAGCTAGAGCAGGGTGCTCGGGAGCCAG
GCAAATCAGACAAATGCGATTGGAGTGGTAGAGCACTTGGTAGGGAACAT
CTCCCTTGAAGTAGTAATATCTGGTGAAAAAACGATCTACAACACTGGGG
TAATCCTCCTGGAAGCTATCTGTAATGGGAGCTACGAGCTTCCCGCAGAT
CTCCTGCTCCTCGTGCTCGAAGTAGAATGGCTCCAGTGGATCATCTGCTT
GTACTGACATGTCGACTGATAACT

BO06483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-PA 645 CG9288-RA 1..642 660..19 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 1117 CG9288-RA 346..987 660..19 3210 100 Minus
CG42375-RA 1117 CG42375-RA 346..987 660..19 3210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13780024..13780665 660..19 3210 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:10:25 has no hits.

BO06483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:57 Download gff for BO06483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 16..660 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:09 Download gff for BO06483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 16..660 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:08 Download gff for BO06483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 342..987 19..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:04 Download gff for BO06483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 342..987 19..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:04 Download gff for BO06483.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13780020..13780665 19..668 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:08 Download gff for BO06483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9605742..9606387 19..668 99   Minus

BO06483.5prime Sequence

674 bp (673 high quality bases) assembled on 2005-12-03

> BO06483.5prime
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGGCAAGCTTTCTAGACC

BO06483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-PA 645 CG9288-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 1117 CG9288-RA 346..987 17..658 3210 100 Plus
CG42375-RA 1117 CG42375-RA 346..987 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13780024..13780665 17..658 3210 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:30 has no hits.

BO06483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:58 Download gff for BO06483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 17..661 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:10 Download gff for BO06483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-PA 1..645 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:34 Download gff for BO06483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 342..987 9..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:04 Download gff for BO06483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 342..987 9..658 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:04 Download gff for BO06483.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13780020..13780665 9..658 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:34 Download gff for BO06483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9605742..9606387 9..658 99   Plus

BO06483.complete Sequence

676 bp (676 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630420

> BO06483.complete
GAAGTTATCAGTCGACATGTCAGTACAAGCAGATGATCCACTGGAGCCAT
TCTACTTCGAGCACGAGGAGCAGGAGATCTGCGGGAAGCTCGTAGCTCCC
ATTACAGATAGCTTCCAGGAGGATTACCCCAGTGTTGTAGATCGTTTTTT
CACCAGATATTACTACTTCAAGGGAGATGTTCCCTACCAAGTGCTCTACC
ACTCCAATCGCATTTGTCTGATTTGCCTGGCTCCCGAGCACCCTGCTCTA
GCTCAAGGCATCTCATCGGTCAACTTTGATATAGGGAACGTAGATCGCAG
CCAGAATGTGGTCAAGGGAAAGGGTAAAAAGGGCGGAATGATCCTACAGG
CGGAGTCCACCTTGGCACTGCTCACCACAGCAAATGGAGGGACTTACAAG
GTGCCCAGCTGCATTCGGGGCAAGCTGGTAGAGGTGAACACCGCCATTGT
GGAGGAGCCAAAGCTTCTGGAGCAACTCCCCGAGGGAGCCGGCTACTTCG
CCATTCTTCTGCCCAAAATCGAAAACTGCGATGCAATCAAGGCGAGTCTT
TTAACCCAGGAGCAGTATGAGGAGCGCCTAAAATCGAAAAACGAAGGTCT
ACCTCAAATTGAGTCCACCGGGGACCACGCTCAAAACAAAAATAAGGAGA
TTCAGGCGGCAAGCTTTCTAGACCAT

BO06483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 645 CG9288-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-RA 1117 CG9288-RA 346..987 17..658 3210 100 Plus
CG42375-RA 1117 CG42375-RA 346..987 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13780024..13780665 17..658 3210 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:53:28 has no hits.

BO06483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:11 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 1..645 17..661 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:12 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 385..1030 9..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:20 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 346..987 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:11 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG9288-RA 385..1030 9..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:13 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
CG42375-RA 346..987 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:13 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13780024..13780665 17..660 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:20 Download gff for BO06483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9605746..9606387 17..660 99   Plus

BO06483.pep Sequence

Translation from 16 to 676

> BO06483.pep
MSVQADDPLEPFYFEHEEQEICGKLVAPITDSFQEDYPSVVDRFFTRYYY
FKGDVPYQVLYHSNRICLICLAPEHPALAQGISSVNFDIGNVDRSQNVVK
GKGKKGGMILQAESTLALLTTANGGTYKVPSCIRGKLVEVNTAIVEEPKL
LEQLPEGAGYFAILLPKIENCDAIKASLLTQEQYEERLKSKNEGLPQIES
TGDHAQNKNKEIQAASFLDH

BO06483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9288-PA 214 CG9288-PA 1..214 1..214 1114 100 Plus