Clone Sequence Records
BO06485.3prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-03
> BO06485.3prime
ATGGTCTAGAAAGCTTGCCGCAATGTTCTTAATGTGCTGCTCCACCTCCT
CCTTGGTGAACATGTAGAACTCTCTTTCTTTCGTCATGGTCATCACCTCC
ACATTGGTGGAGTTTAGTTTCTCCTCCATAACCTGTTTAAGTGTGTTGAG
CGAAATGTCGATAGCCTCATCGAGAGTCAAATCGGGTCTAAATAAGTCCT
GCAGATTCTGCTGAGCACCTTCGCTGCCCGAGCCAATGGCCTTGGCTCCG
TGGCGCACGAATGTGCCGGAGGGATCCATGTGCCACAACTGGGGTTGTCC
CGCCTCGATGCCGGCAAATAGAATGGCCACACCAAAGGGACGACTCATGG
CGGCGGCACCATCGCTGTCGCCACTATCACCGAACTGGATGGCCAAAGTG
GACACAGCCTGGGCGCAGGACTCGATGGACATGCGCTCGTTGTAGACGAA
CCAGTGGTTCTGGCACTCCACGCGTGCCCTCTCGATCAGAGTCCTGGCAT
CGGCCATCAAGCCGGAGGTGGCGCAACCAATGTGCTTGTCCACCTCCACA
ATCTTCTCCACAGTACTGGGTACCATTAGCGGCGAAGTGATGCGCTTCTC
CACCGCCAAAACCACTCCTTCTGGCGTGCAAATTCCAATTGCTGTGGAGC
CCAATTTGATGGCCTCAATGGCATATTCCACTTGGAAGAGGCGGCCCTCC
GGCGAGAAGGTGTTCACGCCTCTGTCGTACTCGGAACGCGTGAGAAACAT
GTCGACTGATAACT
BO06485.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10938-PA | 735 | ProsMA5-RA | 1..732 | 750..19 | 3660 | 100 | Minus |
CG10938-PB | 735 | ProsMA5-RB | 1..732 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 873 | CG10938-RB | 72..804 | 751..19 | 3665 | 100 | Minus |
Prosalpha5-RA | 884 | CG10938-RA | 83..815 | 751..19 | 3665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17413100..17413700 | 619..19 | 3005 | 100 | Minus |
2R | 25286936 | 2R | 17412910..17413044 | 751..617 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:13:18 has no hits.
BO06485.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:50:59 Download gff for
BO06485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PA | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:13 Download gff for
BO06485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PB | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:26 Download gff for
BO06485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 13..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:55 Download gff for
BO06485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 13..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:55 Download gff for
BO06485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17412897..17413043 | 618..764 | 96 | -> | Minus |
2R | 17413102..17413705 | 13..617 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:26 Download gff for
BO06485.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13300402..13300548 | 618..764 | 96 | -> | Minus |
arm_2R | 13300607..13301210 | 13..617 | 99 | | Minus |
BO06485.5prime Sequence
764 bp (686 high quality bases) assembled on 2005-12-03
> BO06485.5prime
GAAGTTATCAGTCGACATGTTTCTCACGCGTTCCGAGTACGACAGAGGCG
TGAACACCTTCTCGCCGGAGGGCCGCCTCTTCCAAGTGGAATATGCCATT
GAGGCCATCAAATTGGGCTCCACAGCAATTGGAATTTGCACGCCAGAAGG
AGTGGTTTTGGCGGTGGAGAAGCGCATCACTTCGCCGCTAATGGTACCCA
GTACTGTGGAGAAGATTGTGGAGGTGGACAAGCACATTGGTTGCGCCACC
TCCGGCTTGATGGCCGATGCCAGGACTCTGATCGAGAGGGCACGCGTGGA
GTGCCAGAACCACTGGTTCGTCTACAACGAGCGCATGTCCATCGAGTCCT
GCGCCCAGGCTGTGTCCACTTTGGCCATCCAGTTCGGTGATAGTGGCGAC
AGCGATGGTGCCGCCGCCATGAGTCGTCCCTTTGGTGTGGCCATTCTATT
TGCCGGCATCGAGGCGGGACAACCCCAGTTGTGGCACATGGATCCCTCCG
GCACATTCGTGCGCCACGGAGCCAAGGCCATTGGCTCGGGCAGCGAAGGT
GCTCAGCAGAATCTGCAGGACTTATTTAGACCCGATTTGACTCTCGATGA
GGCTATCGACATTTCGCTCAACACACTTAAACAGGTTATGGAGGAGAAAC
TAAACTCCACCAATGTGGAGGTGATGACCATGACGAAAGAAAGAGAGTTC
TACATGTTCACCAAGGAGGAGGTGGAGCAGCACATTAAGAACATTGCGGC
AAGCTTTCTAGACC
BO06485.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10938-PA | 735 | ProsMA5-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
CG10938-PB | 735 | ProsMA5-RB | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 873 | CG10938-RB | 72..804 | 16..748 | 3665 | 100 | Plus |
Prosalpha5-RA | 884 | CG10938-RA | 83..815 | 16..748 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17413100..17413700 | 148..748 | 3005 | 100 | Plus |
2R | 25286936 | 2R | 17412910..17413044 | 16..150 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:56 has no hits.
BO06485.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:00 Download gff for
BO06485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PA | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:14 Download gff for
BO06485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PB | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:38 Download gff for
BO06485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 9..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:08 Download gff for
BO06485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 9..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:08 Download gff for
BO06485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17412896..17413043 | 2..149 | 96 | -> | Plus |
2R | 17413102..17413705 | 150..754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:38 Download gff for
BO06485.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13300401..13300548 | 2..149 | 96 | -> | Plus |
arm_2R | 13300607..13301210 | 150..754 | 99 | | Plus |
BO06485.complete Sequence
766 bp (766 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630421
> BO06485.complete
GAAGTTATCAGTCGACATGTTTCTCACGCGTTCCGAGTACGACAGAGGCG
TGAACACCTTCTCGCCGGAGGGCCGCCTCTTCCAAGTGGAATATGCCATT
GAGGCCATCAAATTGGGCTCCACAGCAATTGGAATTTGCACGCCAGAAGG
AGTGGTTTTGGCGGTGGAGAAGCGCATCACTTCGCCGCTAATGGTACCCA
GTACTGTGGAGAAGATTGTGGAGGTGGACAAGCACATTGGTTGCGCCACC
TCCGGCTTGATGGCCGATGCCAGGACTCTGATCGAGAGGGCACGCGTGGA
GTGCCAGAACCACTGGTTCGTCTACAACGAGCGCATGTCCATCGAGTCCT
GCGCCCAGGCTGTGTCCACTTTGGCCATCCAGTTCGGTGATAGTGGCGAC
AGCGATGGTGCCGCCGCCATGAGTCGTCCCTTTGGTGTGGCCATTCTATT
TGCCGGCATCGAGGCGGGACAACCCCAGTTGTGGCACATGGATCCCTCCG
GCACATTCGTGCGCCACGGAGCCAAGGCCATTGGCTCGGGCAGCGAAGGT
GCTCAGCAGAATCTGCAGGACTTATTTAGACCCGATTTGACTCTCGATGA
GGCTATCGACATTTCGCTCAACACACTTAAACAGGTTATGGAGGAGAAAC
TAAACTCCACCAATGTGGAGGTGATGACCATGACGAAAGAAAGAGAGTTC
TACATGTTCACCAAGGAGGAGGTGGAGCAGCACATTAAGAACATTGCGGC
AAGCTTTCTAGACCAT
BO06485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 735 | CG10938-PB | 1..732 | 17..748 | 3660 | 100 | Plus |
Prosalpha5-RA | 735 | CG10938-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 873 | CG10938-RB | 72..804 | 16..748 | 3665 | 100 | Plus |
Prosalpha5-RA | 884 | CG10938-RA | 83..815 | 16..748 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17413100..17413700 | 148..748 | 3005 | 100 | Plus |
2R | 25286936 | 2R | 17412910..17413044 | 16..150 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:10 has no hits.
BO06485.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:12 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ProsMA5-RB | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:04 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ProsMA5-RB | 58..809 | 2..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:02 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 90..815 | 23..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:13 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ProsMA5-RB | 58..809 | 2..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:42 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 90..815 | 23..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:42 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17412917..17413043 | 23..149 | 100 | -> | Plus |
2R | 17413102..17413700 | 150..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:02 Download gff for
BO06485.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13300422..13300548 | 23..149 | 100 | -> | Plus |
arm_2R | 13300607..13301205 | 150..750 | 99 | | Plus |
BO06485.pep Sequence
Translation from 16 to 766
> BO06485.pep
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAV
EKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHW
FVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEA
GQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDIS
LNTLKQVMEEKLNSTNVEVMTMTKEREFYMFTKEEVEQHIKNIAASFLDH
BO06485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-PB | 244 | CG10938-PB | 1..244 | 1..244 | 1244 | 100 | Plus |
Prosalpha5-PA | 244 | CG10938-PA | 1..244 | 1..244 | 1244 | 100 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 1..210 | 3..219 | 342 | 33.2 | Plus |
Prosalpha4-PA | 249 | CG3422-PA | 3..234 | 6..243 | 335 | 33.6 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 3..232 | 6..241 | 315 | 32.2 | Plus |