Clone Sequence Records
BO06486.3prime Sequence
920 bp (764 high quality bases) assembled on 2005-12-03
> BO06486.3prime
ATGGTCTAGAAAGCTTGCGACTTGATCCAGCTTAAACTTGCCGCCCTTGC
TGGCGGCGTCGTTTCGATTAAGTTGGTAGAGCAGGCGCTGCTCCAGATGT
TTCACTGCAGCCACTGTCAGCACCAAAGTATCGTGCTTCAGCATAGAATA
GACGTTCAAGCCAAAGGTTGGCATCAGGTTGACATAGCCCAGATCATCGC
TAGCCTGGCAAATATTGGCGGGGAACATATGGTCTTCGTCTACAATCAAA
ACAGAAGGTCCCCAATTCCGTTCGGCGATTAAATCCTTAAGGAACTCTGC
ATCTCCGGTGGGTATGTCCACATTATCGATGATGTGCAGATCATCCTGGG
CCAGCTTAACACTCAGCGTGGAGGTCAATCCTAAAACCCTCTTATAGAAG
GGCAGCATGTAAAAATGGGTCGTAGGCGACCTGGGTCCGTGCACTACGCC
GCCGCCCTTCAGCATGGGCGAACGGAGGGAACCGTGGCGGGCACGACCAC
CTCCCTTTTGGGGCCACGGCTTCCGACCACCACCGCGCACCTCCGCTCGA
GTTTTGGTGTGCGCCATGCTTACATAACGATACTTGCTCTGCCACTCCAC
ATTCTCCTGTATGATGTCCACGCGCGGCTGGGCGGCAAAGACATCCGGAT
GCAGTTCAATCAGGCCAACCTTTCGCTCCGCCACAGCATCCGTGTTCTCA
ATCCATGCCTGGCGCGCCGTGTTCCTGCTCACCGGCAAGCAATCTGTGTA
ATCTTGCGGCAGAATAAGGGGTGATCTTGTGGCCGGAGGTGCGCCCACTG
TCGCAGCGGCTTCGGTCACCACATTGCCGTGGTTGCCGCTGCGGCTGAAA
GTCCTTGCTACGGGATAAAGCACCTGCCCTGGATGTTTTAAAATATTGTT
CANCATGTCGACTGATAACT
BO06486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5818-PA | 891 | mRpL4-RA | 29..888 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL4-RA | 1012 | CG5818-RA | 51..938 | 906..19 | 4384 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16328412..16329082 | 236..906 | 3254 | 99 | Plus |
| 2L | 23513712 | 2L | 16328133..16328349 | 19..235 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:04:35 has no hits.
BO06486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:01 Download gff for
BO06486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-PA | 1..891 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:15 Download gff for
BO06486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5818-PA | 1..891 | 18..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:52 Download gff for
BO06486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 45..946 | 11..913 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:22 Download gff for
BO06486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 45..946 | 11..913 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:22 Download gff for
BO06486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16328125..16328349 | 11..235 | 98 | <- | Plus |
| 2L | 16328412..16329088 | 236..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:52 Download gff for
BO06486.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16328125..16328349 | 11..235 | 98 | <- | Plus |
| arm_2L | 16328412..16329088 | 236..913 | 99 | | Plus |
BO06486.5prime Sequence
918 bp (849 high quality bases) assembled on 2005-12-03
> BO06486.5prime
GAAGTTATCAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGG
TGCTTTATCCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAAT
GTGGTGACCGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATC
ACCCCTTATTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGA
ACACGGCGCGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGA
AAGGTTGGCCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCG
CGTGGACATCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATG
TAAGCATGGCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGG
AAGCCGTGGCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCG
TTCGCCCATGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTA
CGACCCATTTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACC
TCCACGCTGAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAA
TGTGGACATACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCG
AACGGAATTGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTC
CCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGAT
GCCAACCTTTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGG
TGCTGACAGTGGCTGCAGTGAAACATCTGGAGCAGCGCCTGCTCTACAAC
TTAATCGAAACGACGCCGCCAGCAAGGGCGGCAGTTTAAGCTGGATCAAG
TCGCAAGCTTTCTAGACC
BO06486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5818-PA | 891 | mRpL4-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
| CG5818-PA | 891 | mRpL4-RA | 832..868 | 847..883 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL4-RA | 1012 | CG5818-RA | 51..938 | 17..902 | 4390 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16328412..16329082 | 687..17 | 3355 | 100 | Minus |
| 2L | 23513712 | 2L | 16328133..16328349 | 902..688 | 985 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:50:34 has no hits.
BO06486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:02 Download gff for
BO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-PA | 1..891 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:16 Download gff for
BO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5818-PA | 1..891 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:41 Download gff for
BO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 45..946 | 10..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:13 Download gff for
BO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 45..946 | 10..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:13 Download gff for
BO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16328125..16328349 | 688..910 | 97 | <- | Minus |
| 2L | 16328412..16329088 | 10..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:41 Download gff for
BO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16328125..16328349 | 688..910 | 97 | <- | Minus |
| arm_2L | 16328412..16329088 | 10..687 | 99 | | Minus |
BO06486.complete Sequence
922 bp assembled on 2007-10-17
GenBank Submission: FJ630422
> BO06486.complete
GAAGTTATCAGTCGACATGTTGAACAATATTTTAAAAACATCCAGGCAGG
TGCTTTATCCCGTAGCAAGGACTTTCAGCCGCAGCGGCAACCACGGCAAT
GTGGTGACCGAAGCCGCTGCGACAGTGGGCGCACCTCCGGCCACAAGATC
ACCCCTTATTCTGCCGCAAGATTACACAGATTGCTTGCCGGTGAGCAGGA
ACACGGCGCGCCAGGCATGGATTGAGAACACGGATGCTGTGGCGGAGCGA
AAGGTTGGCCTGATTGAACTGCATCCGGATGTCTTTGCCGCCCAGCCGCG
CGTGGACATCATACAGGAGAATGTGGAGTGGCAGAGCAAGTATCGTTATG
TAAGCATGGCGCACACCAAAACTCGAGCGGAGGTGCGCGGTGGTGGTCGG
AAGCCGTGGCCCCAAAAGGGAGGTGGTCGTGCCCGCCACGGTTCCCTCCG
TTCGCCCATGCTGAAGGGCGGCGGCGTAGTGCACGGACCCAGGTCGCCTA
CGACCCATTTTTACATGCTGCCCTTCTATAAGAGGGTTTTAGGATTGACC
TCCACGCTGAGTGTTAAGCTGGCCCAGGATGATCTGCACATCATCGATAA
TGTGGACATACCCACCGGAGATGCAGAGTTCCTTAAGGATTTAATCGCCG
AACGGAATTGGGGACCTTCTGTTTTGATTGTAGACGAAGACCATATGTTC
CCCGCCAATATTTGCCAGGCTAGCGATGATCTGGGCTATGTCAACCTGAT
GCCAACCTTTGGCTTGAACGTCTATTCTATGCTGAAGCACGATACTTTGG
TGCTGACAGTGGCTGCAGTGAAACATCTGGAGCAGCGCCTGCTCTACCAA
CTTAATCGAAACGACGCCGCCAGCAAGGGCGGCAAGTTTAAGCTGGATCA
AGTCGCAAGCTTTCTAGACCAT
BO06486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL4-RA | 891 | CG5818-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL4-RA | 1012 | CG5818-RA | 51..938 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16328412..16329082 | 687..17 | 3355 | 100 | Minus |
| 2L | 23513712 | 2L | 16328133..16328349 | 904..688 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:19 has no hits.
BO06486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:05 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 1..891 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:15 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 41..942 | 10..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:39 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 56..938 | 22..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:33 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 52..934 | 22..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:30 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL4-RA | 56..938 | 22..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:30 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16328131..16328349 | 688..906 | 99 | <- | Minus |
| 2L | 16328412..16329077 | 22..687 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:39 Download gff for
BO06486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16328131..16328349 | 688..906 | 99 | <- | Minus |
| arm_2L | 16328412..16329077 | 22..687 | 100 | | Minus |
BO06486.pep Sequence
Translation from 16 to 922
> BO06486.pep
MLNNILKTSRQVLYPVARTFSRSGNHGNVVTEAAATVGAPPATRSPLILP
QDYTDCLPVSRNTARQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQ
ENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGRARHGSLRSPMLK
GGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDIPT
GDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGL
NVYSMLKHDTLVLTVAAVKHLEQRLLYQLNRNDAASKGGKFKLDQVASFL
DH
BO06486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL4-PA | 296 | CG5818-PA | 1..296 | 1..296 | 1550 | 100 | Plus |
