Clone Sequence Records
BO06488.3prime Sequence
626 bp (625 high quality bases) assembled on 2005-12-03
> BO06488.3prime
ATGGTCTAGAAAGCTTGCTTTAACAAAGTCCGGATTCTCCTGCACCTTTT
CGGTGAACTGCAGATGGTTGTCGATGATTTGAAAGAGTACCTCCGGCGAG
GGAAAGCGTCCCGTCTGCAGTTTCGACCACACAGGCACATCGTTTAGTGT
TATCTCGAAAGCGCCGGACGAGATGAGCTGGGCCTCGAGCATGTTGCCCA
GGAAGAAGATCATCATGCAGGCGTATATCTTGTTAGCCTGCATGTGGCTC
CACCAACTGGGCGTGTTCAGGCCAAGGAAGGTGAACGGACTGACCGCACT
GACCACGGACACAATGATTATGATCTTCAGGGCGAATATCATCTTGGAGA
GGTAATAGTTTAGACCCGGCGGATCGTAGTTGCCGCCATTCACCTGAATT
TGCGGATACTTCTCGCCCAGCAGGCCCACGTAGTCCTCGAACGCCTTGCG
ATAGCCGCAGGAGTAGCAGTAAAGGAAAGTCATCGTCGGCGCTATGTTCT
GTCCGAATTTGGTAACCGGTATCTCCTTCTCGCCCTCGGCGAACACCAGG
GCGTATCCGGCGCACAGGCACAGCACCAGTAGTGCCACATTCCTTCCGGT
CAGCCTTTCCATGTCGACTGATAACT
BO06488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-PA | 597 | CG3887-RA | 1..594 | 612..19 | 2970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-RC | 1130 | CG3887-RC | 269..862 | 612..19 | 2970 | 100 | Minus |
CG3887-RB | 908 | CG3887-RB | 47..640 | 612..19 | 2970 | 100 | Minus |
CG3887-RA | 960 | CG3887-RA | 99..692 | 612..19 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5011411..5011859 | 467..19 | 2245 | 100 | Minus |
2L | 23513712 | 2L | 5011190..5011335 | 612..467 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:27:09 has no hits.
BO06488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:05 Download gff for
BO06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-PA | 1..597 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:21 Download gff for
BO06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-PA | 1..597 | 15..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:18 Download gff for
BO06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 99..702 | 10..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:45 Download gff for
BO06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 99..702 | 10..612 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:45 Download gff for
BO06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5011190..5011335 | 467..612 | 100 | -> | Minus |
2L | 5011412..5011869 | 10..466 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:18 Download gff for
BO06488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5011190..5011335 | 467..612 | 100 | -> | Minus |
arm_2L | 5011412..5011869 | 10..466 | 99 | | Minus |
BO06488.5prime Sequence
626 bp (625 high quality bases) assembled on 2005-12-03
> BO06488.5prime
GAAGTTATCAGTCGACATGGAAAGGCTGACCGGAAGGAATGTGGCACTAC
TGGTGCTGTGCCTGTGCGCCGGATACGCCCTGGTGTTCGCCGAGGGCGAG
AAGGAGATACCGGTTACCAAATTCGGACAGAACATAGCGCCGACGATGAC
TTTCCTTTACTGCTACTCCTGCGGCTATCGCAAGGCGTTCGAGGACTACG
TGGGCCTGCTGGGCGAGAAGTATCCGCAAATTCAGGTGAATGGCGGCAAC
TACGATCCGCCGGGTCTAAACTATTACCTCTCCAAGATGATATTCGCCCT
GAAGATCATAATCATTGTGTCCGTGGTCAGTGCGGTCAGTCCGTTCACCT
TCCTTGGCCTGAACACGCCCAGTTGGTGGAGCCACATGCAGGCTAACAAG
ATATACGCCTGCATGATGATCTTCTTCCTGGGCAACATGCTCGAGGCCCA
GCTCATCTCGTCCGGCGCTTTCGAGATAACACTAAACGATGTGCCTGTGT
GGTCGAAACTGCAGACGGGACGCTTTCCCTCGCCGGAGGTACTCTTTCAA
ATCATCGACAACCATCTGCAGTTCACCGAAAAGGTGCAGGAGAATCCGGA
CTTTGTTAAAGCAAGCTTTCTAGACC
BO06488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-PA | 597 | CG3887-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-RC | 1130 | CG3887-RC | 269..862 | 17..610 | 2970 | 100 | Plus |
CG3887-RB | 908 | CG3887-RB | 47..640 | 17..610 | 2970 | 100 | Plus |
CG3887-RA | 960 | CG3887-RA | 99..692 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5011411..5011859 | 162..610 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 5011190..5011335 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:11:27 has no hits.
BO06488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:06 Download gff for
BO06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-PA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:22 Download gff for
BO06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-PA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:09 Download gff for
BO06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 99..702 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:49 Download gff for
BO06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 99..702 | 17..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:49 Download gff for
BO06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5011190..5011335 | 17..162 | 100 | -> | Plus |
2L | 5011412..5011869 | 163..619 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:09 Download gff for
BO06488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5011190..5011335 | 17..162 | 100 | -> | Plus |
arm_2L | 5011412..5011869 | 163..619 | 99 | | Plus |
BO06488.complete Sequence
628 bp (628 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630423
> BO06488.complete
GAAGTTATCAGTCGACATGGAAAGGCTGACCGGAAGGAATGTGGCACTAC
TGGTGCTGTGCCTGTGCGCCGGATACGCCCTGGTGTTCGCCGAGGGCGAG
AAGGAGATACCGGTTACCAAATTCGGACAGAACATAGCGCCGACGATGAC
TTTCCTTTACTGCTACTCCTGCGGCTATCGCAAGGCGTTCGAGGACTACG
TGGGCCTGCTGGGCGAGAAGTATCCGCAAATTCAGGTGAATGGCGGCAAC
TACGATCCGCCGGGTCTAAACTATTACCTCTCCAAGATGATATTCGCCCT
GAAGATCATAATCATTGTGTCCGTGGTCAGTGCGGTCAGTCCGTTCACCT
TCCTTGGCCTGAACACGCCCAGTTGGTGGAGCCACATGCAGGCTAACAAG
ATATACGCCTGCATGATGATCTTCTTCCTGGGCAACATGCTCGAGGCCCA
GCTCATCTCGTCCGGCGCTTTCGAGATAACACTAAACGATGTGCCTGTGT
GGTCGAAACTGCAGACGGGACGCTTTCCCTCGCCGGAGGTACTCTTTCAA
ATCATCGACAACCATCTGCAGTTCACCGAAAAGGTGCAGGAGAATCCGGA
CTTTGTTAAAGCAAGCTTTCTAGACCAT
BO06488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-RC | 597 | CG3887-PC | 1..594 | 17..610 | 2970 | 100 | Plus |
CG3887-RB | 597 | CG3887-PB | 1..594 | 17..610 | 2970 | 100 | Plus |
CG3887-RA | 597 | CG3887-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-RC | 1130 | CG3887-RC | 269..862 | 17..610 | 2970 | 100 | Plus |
CG3887-RB | 908 | CG3887-RB | 47..640 | 17..610 | 2970 | 100 | Plus |
CG3887-RA | 960 | CG3887-RA | 99..692 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5011411..5011859 | 162..610 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 5011190..5011335 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:08 has no hits.
BO06488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:13 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:05 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 78..681 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:10 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 99..692 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:14 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 78..681 | 17..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:42 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3887-RA | 99..692 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:42 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5011190..5011335 | 17..162 | 100 | -> | Plus |
2L | 5011412..5011859 | 163..612 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:10 Download gff for
BO06488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5011190..5011335 | 17..162 | 100 | -> | Plus |
arm_2L | 5011412..5011859 | 163..612 | 99 | | Plus |
BO06488.pep Sequence
Translation from 16 to 628
> BO06488.pep
MERLTGRNVALLVLCLCAGYALVFAEGEKEIPVTKFGQNIAPTMTFLYCY
SCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIII
VSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSG
AFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHLQFTEKVQENPDFVKAS
FLDH
BO06488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3887-PC | 198 | CG3887-PC | 1..198 | 1..198 | 1047 | 100 | Plus |
CG3887-PB | 198 | CG3887-PB | 1..198 | 1..198 | 1047 | 100 | Plus |
CG3887-PA | 198 | CG3887-PA | 1..198 | 1..198 | 1047 | 100 | Plus |