Clone BO06488 Report

Search the DGRC for BO06488

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG3887-RA
Protein status:BO06488.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO06488.3prime Sequence

626 bp (625 high quality bases) assembled on 2005-12-03

> BO06488.3prime
ATGGTCTAGAAAGCTTGCTTTAACAAAGTCCGGATTCTCCTGCACCTTTT
CGGTGAACTGCAGATGGTTGTCGATGATTTGAAAGAGTACCTCCGGCGAG
GGAAAGCGTCCCGTCTGCAGTTTCGACCACACAGGCACATCGTTTAGTGT
TATCTCGAAAGCGCCGGACGAGATGAGCTGGGCCTCGAGCATGTTGCCCA
GGAAGAAGATCATCATGCAGGCGTATATCTTGTTAGCCTGCATGTGGCTC
CACCAACTGGGCGTGTTCAGGCCAAGGAAGGTGAACGGACTGACCGCACT
GACCACGGACACAATGATTATGATCTTCAGGGCGAATATCATCTTGGAGA
GGTAATAGTTTAGACCCGGCGGATCGTAGTTGCCGCCATTCACCTGAATT
TGCGGATACTTCTCGCCCAGCAGGCCCACGTAGTCCTCGAACGCCTTGCG
ATAGCCGCAGGAGTAGCAGTAAAGGAAAGTCATCGTCGGCGCTATGTTCT
GTCCGAATTTGGTAACCGGTATCTCCTTCTCGCCCTCGGCGAACACCAGG
GCGTATCCGGCGCACAGGCACAGCACCAGTAGTGCCACATTCCTTCCGGT
CAGCCTTTCCATGTCGACTGATAACT

BO06488.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-PA 597 CG3887-RA 1..594 612..19 2970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-RC 1130 CG3887-RC 269..862 612..19 2970 100 Minus
CG3887-RB 908 CG3887-RB 47..640 612..19 2970 100 Minus
CG3887-RA 960 CG3887-RA 99..692 612..19 2970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5011411..5011859 467..19 2245 100 Minus
2L 23513712 2L 5011190..5011335 612..467 730 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:27:09 has no hits.

BO06488.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:05 Download gff for BO06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-PA 1..597 15..612 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:21 Download gff for BO06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-PA 1..597 15..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:18 Download gff for BO06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 99..702 10..612 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:45 Download gff for BO06488.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 99..702 10..612 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:45 Download gff for BO06488.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5011190..5011335 467..612 100 -> Minus
2L 5011412..5011869 10..466 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:18 Download gff for BO06488.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5011190..5011335 467..612 100 -> Minus
arm_2L 5011412..5011869 10..466 99   Minus

BO06488.5prime Sequence

626 bp (625 high quality bases) assembled on 2005-12-03

> BO06488.5prime
GAAGTTATCAGTCGACATGGAAAGGCTGACCGGAAGGAATGTGGCACTAC
TGGTGCTGTGCCTGTGCGCCGGATACGCCCTGGTGTTCGCCGAGGGCGAG
AAGGAGATACCGGTTACCAAATTCGGACAGAACATAGCGCCGACGATGAC
TTTCCTTTACTGCTACTCCTGCGGCTATCGCAAGGCGTTCGAGGACTACG
TGGGCCTGCTGGGCGAGAAGTATCCGCAAATTCAGGTGAATGGCGGCAAC
TACGATCCGCCGGGTCTAAACTATTACCTCTCCAAGATGATATTCGCCCT
GAAGATCATAATCATTGTGTCCGTGGTCAGTGCGGTCAGTCCGTTCACCT
TCCTTGGCCTGAACACGCCCAGTTGGTGGAGCCACATGCAGGCTAACAAG
ATATACGCCTGCATGATGATCTTCTTCCTGGGCAACATGCTCGAGGCCCA
GCTCATCTCGTCCGGCGCTTTCGAGATAACACTAAACGATGTGCCTGTGT
GGTCGAAACTGCAGACGGGACGCTTTCCCTCGCCGGAGGTACTCTTTCAA
ATCATCGACAACCATCTGCAGTTCACCGAAAAGGTGCAGGAGAATCCGGA
CTTTGTTAAAGCAAGCTTTCTAGACC

BO06488.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-PA 597 CG3887-RA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-RC 1130 CG3887-RC 269..862 17..610 2970 100 Plus
CG3887-RB 908 CG3887-RB 47..640 17..610 2970 100 Plus
CG3887-RA 960 CG3887-RA 99..692 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5011411..5011859 162..610 2245 100 Plus
2L 23513712 2L 5011190..5011335 17..162 730 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:11:27 has no hits.

BO06488.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:06 Download gff for BO06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-PA 1..597 17..614 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:22 Download gff for BO06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-PA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:09 Download gff for BO06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 99..702 17..619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:32:49 Download gff for BO06488.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 99..702 17..619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:32:49 Download gff for BO06488.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5011190..5011335 17..162 100 -> Plus
2L 5011412..5011869 163..619 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:09 Download gff for BO06488.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5011190..5011335 17..162 100 -> Plus
arm_2L 5011412..5011869 163..619 99   Plus

BO06488.complete Sequence

628 bp (628 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630423

> BO06488.complete
GAAGTTATCAGTCGACATGGAAAGGCTGACCGGAAGGAATGTGGCACTAC
TGGTGCTGTGCCTGTGCGCCGGATACGCCCTGGTGTTCGCCGAGGGCGAG
AAGGAGATACCGGTTACCAAATTCGGACAGAACATAGCGCCGACGATGAC
TTTCCTTTACTGCTACTCCTGCGGCTATCGCAAGGCGTTCGAGGACTACG
TGGGCCTGCTGGGCGAGAAGTATCCGCAAATTCAGGTGAATGGCGGCAAC
TACGATCCGCCGGGTCTAAACTATTACCTCTCCAAGATGATATTCGCCCT
GAAGATCATAATCATTGTGTCCGTGGTCAGTGCGGTCAGTCCGTTCACCT
TCCTTGGCCTGAACACGCCCAGTTGGTGGAGCCACATGCAGGCTAACAAG
ATATACGCCTGCATGATGATCTTCTTCCTGGGCAACATGCTCGAGGCCCA
GCTCATCTCGTCCGGCGCTTTCGAGATAACACTAAACGATGTGCCTGTGT
GGTCGAAACTGCAGACGGGACGCTTTCCCTCGCCGGAGGTACTCTTTCAA
ATCATCGACAACCATCTGCAGTTCACCGAAAAGGTGCAGGAGAATCCGGA
CTTTGTTAAAGCAAGCTTTCTAGACCAT

BO06488.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-RC 597 CG3887-PC 1..594 17..610 2970 100 Plus
CG3887-RB 597 CG3887-PB 1..594 17..610 2970 100 Plus
CG3887-RA 597 CG3887-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-RC 1130 CG3887-RC 269..862 17..610 2970 100 Plus
CG3887-RB 908 CG3887-RB 47..640 17..610 2970 100 Plus
CG3887-RA 960 CG3887-RA 99..692 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5011411..5011859 162..610 2245 100 Plus
2L 23513712 2L 5011190..5011335 17..162 730 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:17:08 has no hits.

BO06488.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:13 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:05 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 78..681 17..619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:10 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 99..692 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:14 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 78..681 17..619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:42 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
CG3887-RA 99..692 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:42 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5011190..5011335 17..162 100 -> Plus
2L 5011412..5011859 163..612 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:10 Download gff for BO06488.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5011190..5011335 17..162 100 -> Plus
arm_2L 5011412..5011859 163..612 99   Plus

BO06488.pep Sequence

Translation from 16 to 628

> BO06488.pep
MERLTGRNVALLVLCLCAGYALVFAEGEKEIPVTKFGQNIAPTMTFLYCY
SCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIII
VSVVSAVSPFTFLGLNTPSWWSHMQANKIYACMMIFFLGNMLEAQLISSG
AFEITLNDVPVWSKLQTGRFPSPEVLFQIIDNHLQFTEKVQENPDFVKAS
FLDH

BO06488.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3887-PC 198 CG3887-PC 1..198 1..198 1047 100 Plus
CG3887-PB 198 CG3887-PB 1..198 1..198 1047 100 Plus
CG3887-PA 198 CG3887-PA 1..198 1..198 1047 100 Plus