Clone BO06489 Report

Search the DGRC for BO06489

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG3476-RA
Protein status:BO06489.pep: validated full length
Sequenced Size:931

Clone Sequence Records

BO06489.3prime Sequence

929 bp (768 high quality bases) assembled on 2005-12-03

> BO06489.3prime
ATGGTCTAGAAAGCTTGCAGCCTTCAGCAAATCATTGGTTAGCTCCACGC
CGAAGAAAACTGCTGCGGTGGAGGGAAAGGCACGAAGTAGAATTGGCAGG
ATACCGCGAAATAGAGCTTTTGGGCCTTCTGTGGCCATGAGGTTTCTAAA
AACGCTGCGAATGCCGTGCTTGTATGTTCCCTCAGGTGCCGACTGGAGAC
GGCTTTTAAGTACATCGAACGGCACGGCCAAAGTCCAAAACACAATGCCC
GCCGTTCCGCCGGACAGAATAGTTGATGTGGTGCTAATCTTTCCATTGGC
GGACTTCTTTCTAGCCAATTCCTGTAGGAATTCGTAGGTCACAAAGTAAA
AACCGGTGGGCGAGTCTCTCAGAATGCACGCGCATGTTCCCTTGAAGAGG
CTCCGAATGCCACCCTGCCTATATAGCTTGGCGGCCGTGTCAATGGTTCC
ATTGTAGAGCAGAGGTCCGTTGGACACGGTTTGCGTCTGCAGAAGGACTT
TTATACGATCGGTGGGCACTGTGACGAGGGCAGAACAAACTCCGGCCAAG
GCTCCCGCGGCGAAGATTTGTGGGTAGGTGAGCCTAATGTGGTCATCCGT
TTGGAACAATCGTTTACCCGCCGCATAGACGGCAAAGTCCACGGCATAGA
TGGGTGTTACTCCCACAAGTGGAGCGGATATTCCTCTGTAGAATCCGCGA
AAACCCTCATAACGAAATGTCCTGGCGGCACAATCTATGACTCCCTTGTA
TCTCGGCGGCTGTCCAGGTGGAGGTGTGGGCATGGTTTGGAGACGGACCT
TTATTGTGTCCNATGGATGGCCAACGAGCACATTGCACATGCCTCCCACG
CCCGCCCGCAATAAATGACTTTACGGGATTGGATTTCTTTTCTGTGCTGA
TTTCGACCTCCTCATGTCGACTGATAACT

BO06489.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-PA 900 CG3476-RA 64..897 852..19 4151 99.8 Minus
CG3476-PA 900 CG3476-RA 4..65 913..852 310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 1245 CG3476-RA 289..1182 913..19 4439 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7027986..7028420 800..366 2175 100 Minus
2L 23513712 2L 7028488..7028666 367..189 895 100 Minus
2L 23513712 2L 7028726..7028896 189..19 855 100 Minus
2L 23513712 2L 7027814..7027929 913..797 524 98.3 Minus
Blast to na_te.dros performed on 2015-02-13 16:01:38 has no hits.

BO06489.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:07 Download gff for BO06489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 1..900 15..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:24 Download gff for BO06489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 1..900 15..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:57 Download gff for BO06489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 280..1189 10..924 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:22 Download gff for BO06489.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 280..1189 10..924 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:22 Download gff for BO06489.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7027805..7027927 799..924 95 -> Minus
2L 7027988..7028420 366..798 100 -> Minus
2L 7028490..7028666 189..365 100 -> Minus
2L 7028727..7028903 10..188 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:57 Download gff for BO06489.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7027805..7027927 799..924 95 -> Minus
arm_2L 7027988..7028420 366..798 100 -> Minus
arm_2L 7028490..7028666 189..365 100 -> Minus
arm_2L 7028727..7028903 10..188 97   Minus

BO06489.5prime Sequence

884 bp (749 high quality bases) assembled on 2005-12-03

> BO06489.5prime
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGAAACATACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCA
CAGAAGGCCCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGT
GCCTTTCCCTCCACCGCAGCAGTTTTCTTCGGCG

BO06489.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-PA 900 CG3476-RA 1..868 17..884 4315 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 1245 CG3476-RA 286..1153 17..884 4325 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7027986..7028420 132..566 2175 100 Plus
2L 23513712 2L 7028488..7028666 565..743 895 100 Plus
2L 23513712 2L 7028726..7028867 743..884 695 99.3 Plus
2L 23513712 2L 7027811..7027929 17..135 595 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:51:50 has no hits.

BO06489.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:08 Download gff for BO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:25 Download gff for BO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:44 Download gff for BO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 280..1153 8..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:21 Download gff for BO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 280..1153 8..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:21 Download gff for BO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7027805..7027927 8..133 97 -> Plus
2L 7027988..7028420 134..566 100 -> Plus
2L 7028490..7028666 567..743 100 -> Plus
2L 7028727..7028867 744..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:44 Download gff for BO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7027805..7027927 8..133 97 -> Plus
arm_2L 7027988..7028420 134..566 100 -> Plus
arm_2L 7028490..7028666 567..743 100 -> Plus
arm_2L 7028727..7028867 744..884 99   Plus

BO06489.complete Sequence

931 bp (931 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630424

> BO06489.complete
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGGAACATACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCA
CAGAAGGCCCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGT
GCCTTTCCCTCCACCGCAGCAGTTTTCTTCGGCGTGGAGCTAACCAATGA
TTTGCTGAAGGCTGCAAGCTTTCTAGACCAT

BO06489.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 900 CG3476-PA 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 1245 CG3476-RA 286..1182 17..913 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7027986..7028420 132..566 2175 100 Plus
2L 23513712 2L 7028488..7028666 565..743 895 100 Plus
2L 23513712 2L 7028726..7028896 743..913 855 100 Plus
2L 23513712 2L 7027811..7027929 17..135 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:05:15 has no hits.

BO06489.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:15 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 1..900 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:07 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 212..1121 8..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:16 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 286..1182 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:15 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 212..1121 8..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:14 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 286..1182 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:14 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7027811..7027927 17..133 100 -> Plus
2L 7027988..7028420 134..566 100 -> Plus
2L 7028490..7028666 567..743 100 -> Plus
2L 7028727..7028896 744..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:16 Download gff for BO06489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7027811..7027927 17..133 100 -> Plus
arm_2L 7027988..7028420 134..566 100 -> Plus
arm_2L 7028490..7028666 567..743 100 -> Plus
arm_2L 7028727..7028896 744..915 98   Plus

BO06489.pep Sequence

Translation from 16 to 931

> BO06489.pep
MEEVEISTEKKSNPVKSFIAGGVGGMCNVLVGHPLDTIKVRLQTMPTPPP
GQPPRYKGVIDCAARTFRYEGFRGFYRGISAPLVGVTPIYAVDFAVYAAG
KRLFQTDDHIRLTYPQIFAAGALAGVCSALVTVPTDRIKVLLQTQTVSNG
PLLYNGTIDTAAKLYRQGGIRSLFKGTCACILRDSPTGFYFVTYEFLQEL
ARKKSANGKISTTSTILSGGTAGIVFWTLAVPFDVLKSRLQSAPEGTYKH
GIRSVFRNLMATEGPKALFRGILPILLRAFPSTAAVFFGVELTNDLLKAA
SFLDH

BO06489.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-PA 299 CG3476-PA 1..299 1..299 1541 100 Plus
colt-PD 306 CG3057-PD 7..296 6..294 978 62.8 Plus
colt-PA 306 CG3057-PA 7..296 6..294 978 62.8 Plus
CG4995-PD 360 CG4995-PD 2..280 15..304 407 37.1 Plus
CG4995-PC 360 CG4995-PC 2..280 15..304 407 37.1 Plus
colt-PD 306 CG3057-PD 19..207 118..301 165 27.9 Plus
colt-PA 306 CG3057-PA 19..207 118..301 165 27.9 Plus