Clone Sequence Records
BO06489.3prime Sequence
929 bp (768 high quality bases) assembled on 2005-12-03
> BO06489.3prime
ATGGTCTAGAAAGCTTGCAGCCTTCAGCAAATCATTGGTTAGCTCCACGC
CGAAGAAAACTGCTGCGGTGGAGGGAAAGGCACGAAGTAGAATTGGCAGG
ATACCGCGAAATAGAGCTTTTGGGCCTTCTGTGGCCATGAGGTTTCTAAA
AACGCTGCGAATGCCGTGCTTGTATGTTCCCTCAGGTGCCGACTGGAGAC
GGCTTTTAAGTACATCGAACGGCACGGCCAAAGTCCAAAACACAATGCCC
GCCGTTCCGCCGGACAGAATAGTTGATGTGGTGCTAATCTTTCCATTGGC
GGACTTCTTTCTAGCCAATTCCTGTAGGAATTCGTAGGTCACAAAGTAAA
AACCGGTGGGCGAGTCTCTCAGAATGCACGCGCATGTTCCCTTGAAGAGG
CTCCGAATGCCACCCTGCCTATATAGCTTGGCGGCCGTGTCAATGGTTCC
ATTGTAGAGCAGAGGTCCGTTGGACACGGTTTGCGTCTGCAGAAGGACTT
TTATACGATCGGTGGGCACTGTGACGAGGGCAGAACAAACTCCGGCCAAG
GCTCCCGCGGCGAAGATTTGTGGGTAGGTGAGCCTAATGTGGTCATCCGT
TTGGAACAATCGTTTACCCGCCGCATAGACGGCAAAGTCCACGGCATAGA
TGGGTGTTACTCCCACAAGTGGAGCGGATATTCCTCTGTAGAATCCGCGA
AAACCCTCATAACGAAATGTCCTGGCGGCACAATCTATGACTCCCTTGTA
TCTCGGCGGCTGTCCAGGTGGAGGTGTGGGCATGGTTTGGAGACGGACCT
TTATTGTGTCCNATGGATGGCCAACGAGCACATTGCACATGCCTCCCACG
CCCGCCCGCAATAAATGACTTTACGGGATTGGATTTCTTTTCTGTGCTGA
TTTCGACCTCCTCATGTCGACTGATAACT
BO06489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-PA | 900 | CG3476-RA | 64..897 | 852..19 | 4151 | 99.8 | Minus |
CG3476-PA | 900 | CG3476-RA | 4..65 | 913..852 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 1245 | CG3476-RA | 289..1182 | 913..19 | 4439 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7027986..7028420 | 800..366 | 2175 | 100 | Minus |
2L | 23513712 | 2L | 7028488..7028666 | 367..189 | 895 | 100 | Minus |
2L | 23513712 | 2L | 7028726..7028896 | 189..19 | 855 | 100 | Minus |
2L | 23513712 | 2L | 7027814..7027929 | 913..797 | 524 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:01:38 has no hits.
BO06489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:07 Download gff for
BO06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 1..900 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:24 Download gff for
BO06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 1..900 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:57 Download gff for
BO06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 280..1189 | 10..924 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:22 Download gff for
BO06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 280..1189 | 10..924 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:22 Download gff for
BO06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7027805..7027927 | 799..924 | 95 | -> | Minus |
2L | 7027988..7028420 | 366..798 | 100 | -> | Minus |
2L | 7028490..7028666 | 189..365 | 100 | -> | Minus |
2L | 7028727..7028903 | 10..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:57 Download gff for
BO06489.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7027805..7027927 | 799..924 | 95 | -> | Minus |
arm_2L | 7027988..7028420 | 366..798 | 100 | -> | Minus |
arm_2L | 7028490..7028666 | 189..365 | 100 | -> | Minus |
arm_2L | 7028727..7028903 | 10..188 | 97 | | Minus |
BO06489.5prime Sequence
884 bp (749 high quality bases) assembled on 2005-12-03
> BO06489.5prime
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGAAACATACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCA
CAGAAGGCCCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGT
GCCTTTCCCTCCACCGCAGCAGTTTTCTTCGGCG
BO06489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-PA | 900 | CG3476-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 1245 | CG3476-RA | 286..1153 | 17..884 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7027986..7028420 | 132..566 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 7028488..7028666 | 565..743 | 895 | 100 | Plus |
2L | 23513712 | 2L | 7028726..7028867 | 743..884 | 695 | 99.3 | Plus |
2L | 23513712 | 2L | 7027811..7027929 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:51:50 has no hits.
BO06489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:08 Download gff for
BO06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:25 Download gff for
BO06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:00:44 Download gff for
BO06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 280..1153 | 8..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:21 Download gff for
BO06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 280..1153 | 8..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:21 Download gff for
BO06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7027805..7027927 | 8..133 | 97 | -> | Plus |
2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
2L | 7028727..7028867 | 744..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:00:44 Download gff for
BO06489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7027805..7027927 | 8..133 | 97 | -> | Plus |
arm_2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
arm_2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
arm_2L | 7028727..7028867 | 744..884 | 99 | | Plus |
BO06489.complete Sequence
931 bp (931 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630424
> BO06489.complete
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGGAACATACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCA
CAGAAGGCCCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGT
GCCTTTCCCTCCACCGCAGCAGTTTTCTTCGGCGTGGAGCTAACCAATGA
TTTGCTGAAGGCTGCAAGCTTTCTAGACCAT
BO06489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 900 | CG3476-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 1245 | CG3476-RA | 286..1182 | 17..913 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7027986..7028420 | 132..566 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 7028488..7028666 | 565..743 | 895 | 100 | Plus |
2L | 23513712 | 2L | 7028726..7028896 | 743..913 | 855 | 100 | Plus |
2L | 23513712 | 2L | 7027811..7027929 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:05:15 has no hits.
BO06489.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:15 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:07 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 212..1121 | 8..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:16 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 286..1182 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:15 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 212..1121 | 8..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:14 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 286..1182 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:14 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7027811..7027927 | 17..133 | 100 | -> | Plus |
2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
2L | 7028727..7028896 | 744..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:16 Download gff for
BO06489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7027811..7027927 | 17..133 | 100 | -> | Plus |
arm_2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
arm_2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
arm_2L | 7028727..7028896 | 744..915 | 98 | | Plus |
BO06489.pep Sequence
Translation from 16 to 931
> BO06489.pep
MEEVEISTEKKSNPVKSFIAGGVGGMCNVLVGHPLDTIKVRLQTMPTPPP
GQPPRYKGVIDCAARTFRYEGFRGFYRGISAPLVGVTPIYAVDFAVYAAG
KRLFQTDDHIRLTYPQIFAAGALAGVCSALVTVPTDRIKVLLQTQTVSNG
PLLYNGTIDTAAKLYRQGGIRSLFKGTCACILRDSPTGFYFVTYEFLQEL
ARKKSANGKISTTSTILSGGTAGIVFWTLAVPFDVLKSRLQSAPEGTYKH
GIRSVFRNLMATEGPKALFRGILPILLRAFPSTAAVFFGVELTNDLLKAA
SFLDH
BO06489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-PA | 299 | CG3476-PA | 1..299 | 1..299 | 1541 | 100 | Plus |
colt-PD | 306 | CG3057-PD | 7..296 | 6..294 | 978 | 62.8 | Plus |
colt-PA | 306 | CG3057-PA | 7..296 | 6..294 | 978 | 62.8 | Plus |
CG4995-PD | 360 | CG4995-PD | 2..280 | 15..304 | 407 | 37.1 | Plus |
CG4995-PC | 360 | CG4995-PC | 2..280 | 15..304 | 407 | 37.1 | Plus |
colt-PD | 306 | CG3057-PD | 19..207 | 118..301 | 165 | 27.9 | Plus |
colt-PA | 306 | CG3057-PA | 19..207 | 118..301 | 165 | 27.9 | Plus |