Clone Sequence Records
BO06490.3prime Sequence
931 bp (839 high quality bases) assembled on 2005-12-03
> BO06490.3prime
ATGGTCTAGAAAGCTTGCGTAAATGGCCATGGCCACCTTCTTCTCCAGCG
TCTTGCAGCCCGAAATGGCGAACAAGCTGTGCGTGCGATCGTAACTAATG
GAGGAGTTTATTATGTCCTCAATGATTTTTTGGTTGTTCGCTTGCTTAGG
ATCGCGCCGCCACCTTAAAAGCTCCGCCTCCAGGCACTTGATCACATGCG
CCTTCTCCATCGGCAGGAACGGAATGAAATGATCGATAACATGAGACTCA
ATCATGGTGGTCTTTTTCATACCGCCATCCATGTTATAGGCGGCCTTCCG
CAAAAGGGGCTCAAAGTCACTCAGTCGTGTGTCCTCGCGCAGCCTACCAT
TCTTCATCACACTACCCAGATGACTGGCTATATGACTGCCCGCCGTGTTC
GAGAGAAAGATGAAGATTGCCTTTGTGTTATCCGTGCCATCGACAAAGGC
GTTGTAGTCCACCAGCGAGGTGAGCTGGTCGAATACTCCGCTGGGCATTT
TATCCACCTCGTCGAAGATGAACAAAGATCTCGGGCAGCTACGCAAGGTA
TCGCGCACCGCATTATTGATTTTCACCCTATAGTTAGACACCTCACTTTC
CTTGGGAAAGTCAGCTTGTCCGAGATACTTGGTTACATAGTTCGACCTGG
AGCCCTTCAAATACATAGCATCTGCAATTTGCTCAGCCACAAAATTCTTG
CCCGTACCGGGCTGGCCGTGAAAGCTGATGACCAGCGGTTTCCGTGACTT
ATTGCCCGAAGCGATGTGCGCCTTCAGTGCGGGGACGATATGCTGCCTCA
CGATGTGCTGGCCAATGAGGGTGCGTTCCAGGGATCTTTCTATTCATCTA
TTCTCGCCGGAATGTTTCGGTCATCGCAGCATTCGGCAAACCGGCAATAT
GTATGTTCTTTTGAGTACGCCCCAAGGGCCA
BO06490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3024-PA | 1023 | torp4a-RA | 197..1020 | 842..19 | 4120 | 100 | Minus |
| CG3024-PA | 1023 | torp4a-RA | 107..196 | 931..842 | 400 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 374..1287 | 931..19 | 4515 | 99.7 | Minus |
| Torsin-RA | 1184 | CG3024-RA | 175..1088 | 931..19 | 4515 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648688..4649511 | 19..842 | 4120 | 100 | Plus |
| X | 23542271 | X | 4649573..4649659 | 845..931 | 405 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:18:23 has no hits.
BO06490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:08 Download gff for
BO06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 108..1023 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:26 Download gff for
BO06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 108..1023 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:54 Download gff for
BO06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 176..1088 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:29 Download gff for
BO06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 176..1088 | 19..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:29 Download gff for
BO06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648688..4649514 | 19..844 | 99 | <- | Plus |
| X | 4649573..4649658 | 845..930 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:54 Download gff for
BO06490.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542721..4543547 | 19..844 | 99 | <- | Plus |
| arm_X | 4543606..4543691 | 845..930 | 97 | | Plus |
BO06490.5prime Sequence
913 bp (789 high quality bases) assembled on 2005-12-03
> BO06490.5prime
GAAGTTATCAGTCGACATGATGAGCTTTCCACGCATGTTATCACTGTGCC
TTAGCGTGCTTGTAATACTGCCGCTTCCCCTCCAGTCGGTGGATCCCCTG
ACCATTGGTGCCGTTGGCGCCGTGGCCCTTGGGGCGTACTTCAAAGAACA
TACATATTGCCGGTTTGCCGAATGCTGCGATGACCGAAACATTCCGGCGA
GAATAGATGAATTAGAAAGATCCCTGGAACGCACCCTCATTGGCCAGCAC
ATCGTGAGGCAGCATATCGTCCCCGCACTGAAGGCGCACATCGCTTCGGG
CAATAAGTCACGGAAACCGCTGGTCATCAGCTTTCACGGCCAGCCCGGTA
CGGGCAAGAATTTTGTGGCTGAGCAAATTGCAGATGCTATGTATTTGAAG
GGCTCCAGGTCGAACTATGTAACCAAGTATCTCGGACAAGCTGACTTTCC
CAAGGAAAGTGAGGTGTCTAACTATAGGGTGAAAATCAATAATGCGGTGC
GCGATACCTTGCGTAGCTGCCCGAGATCTTTGTTCATCTTCGACGAGGTG
GATAAAATGCCCAGCGGAGTATTCGACCAGCTCACCTCGCTGGTGGACTA
CAACGCCTTTGTCGATGGCACGGATAACACAAAGGCAATCTTCATCTTTC
TCTCGAACACGGCGGGCAGTCATATAGCCAGTCATCTGGGTAGTGTGATG
AAGAATGGTAGGCTGCGCGAGGACACACGACTGAGTGACTTTGAGCCCCT
TTTGCGGAAGGCCGCCTATAACATGGATGGCGGTATGAAAAAACCACCAT
GATTGAGTCTCATGTTATCGATCATTTCATTCCGTTCCTGCCGATGGAGA
ANGCGCATGTGATCAAGTGCCTGGAGGCGGAGCTTTTAANGTGGCGGCGC
GATCCTAAGCAAG
BO06490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3024-PA | 1023 | torp4a-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
| CG3024-PA | 1023 | torp4a-RA | 778..898 | 793..913 | 567 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 268..1165 | 17..913 | 4443 | 99.7 | Plus |
| Torsin-RA | 1184 | CG3024-RA | 69..966 | 17..913 | 4443 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648810..4649515 | 913..209 | 3458 | 99.6 | Minus |
| X | 23542271 | X | 4649573..4649765 | 209..17 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:28:38 has no hits.
BO06490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:09 Download gff for
BO06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:28 Download gff for
BO06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-PA | 1..898 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:37 Download gff for
BO06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..966 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:37 Download gff for
BO06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..966 | 17..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:37 Download gff for
BO06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648810..4649514 | 210..913 | 99 | <- | Minus |
| X | 4649573..4649765 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:37 Download gff for
BO06490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542843..4543547 | 210..913 | 99 | <- | Minus |
| arm_X | 4543606..4543798 | 17..209 | 100 | | Minus |
BO06490.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630425
> BO06490.complete
GAAGTTATCAGTCGACATGATGAGCTTTCCACGCATGTTATCACTGTGCC
TTAGCGTGCTTGTAATACTGCCGCTTCCCCTCCAGTCGGTGGATCCCCTG
ACCATTGGTGCCGTTGGCGCCGTGGCCCTTGGGGCGTACTTCAAAGAACA
TACATATTGCCGGTTTGCCGAATGCTGCGATGACCGAAACATTCCGGCGA
GAATAGATGAATTAGAAAGATCCCTGGAACGCACCCTCATTGGCCAGCAC
ATCGTGAGGCAGCATATCGTCCCCGCACTGAAGGCGCACATCGCTTCGGG
CAATAAGTCACGGAAACCGCTGGTCATCAGCTTTCACGGCCAGCCCGGTA
CGGGCAAGAATTTTGTGGCTGAGCAAATTGCAGATGCTATGTATTTGAAG
GGCTCCAGGTCGAACTATGTAACCAAGTATCTCGGACAAGCTGACTTTCC
CAAGGAAAGTGAGGTGTCTAACTATAGGGTGAAAATCAATAATGCGGTGC
GCGATACCTTGCGTAGCTGCCCGAGATCTTTGTTCATCTTCGACGAGGTG
GATAAAATGCCCAGCGGAGTATTCGACCAGCTCACCTCGCTGGTGGACTA
CAACGCCTTTGTCGATGGCACGGATAACACAAAGGCAATCTTCATCTTTC
TCTCGAACACGGCGGGCAGTCATATAGCCAGTCATCTGGGTAGTGTGATG
AAGAATGGTAGGCTGCGCGAGGACACACGACTGAGTGACTTTGAGCCCCT
TTTGCGGAAGGCCGCCTATAACATGGATGGCGGTATGAAAAAGACCACCA
TGATTGAGTCTCATGTTATCGATCATTTCATTCCGTTCCTGCCGATGGAG
AAGGCGCATGTGATCAAGTGCCTGGAGGCGGAGCTTTTAAGGTGGCGGCG
CGATCCTAAGCAAGCGAACAACCAAAAAATCATTGAGGACATAATAAACT
CCTCCATTAGTTACGATCGCACGCACAGCTTGTTCGCCATTTCGGGCTGC
AAGACGCTGGAGAAGAAGGTGGCCATGGCCATTTACGCAAGCTTTCTAGA
CCAT
BO06490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1023 | CG3024-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
| Torsin-RA | 1023 | CG3024-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 268..1287 | 17..1036 | 5100 | 100 | Plus |
| Torsin-RA | 1184 | CG3024-RA | 69..1088 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648688..4649515 | 1036..209 | 4140 | 100 | Minus |
| X | 23542271 | X | 4649573..4649765 | 209..17 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:24:35 has no hits.
BO06490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:16 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| torp4a-RA | 1..1023 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:09 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| torp4a-RA | 68..1087 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:03 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..1088 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:16 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| torp4a-RA | 68..1087 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:58 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 69..1088 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:58 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648685..4649514 | 210..1038 | 99 | <- | Minus |
| X | 4649573..4649765 | 17..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:03 Download gff for
BO06490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542718..4543547 | 210..1038 | 99 | <- | Minus |
| arm_X | 4543606..4543798 | 17..209 | 100 | | Minus |
BO06490.pep Sequence
Translation from 16 to 1054
> BO06490.pep
MMSFPRMLSLCLSVLVILPLPLQSVDPLTIGAVGAVALGAYFKEHTYCRF
AECCDDRNIPARIDELERSLERTLIGQHIVRQHIVPALKAHIASGNKSRK
PLVISFHGQPGTGKNFVAEQIADAMYLKGSRSNYVTKYLGQADFPKESEV
SNYRVKINNAVRDTLRSCPRSLFIFDEVDKMPSGVFDQLTSLVDYNAFVD
GTDNTKAIFIFLSNTAGSHIASHLGSVMKNGRLREDTRLSDFEPLLRKAA
YNMDGGMKKTTMIESHVIDHFIPFLPMEKAHVIKCLEAELLRWRRDPKQA
NNQKIIEDIINSSISYDRTHSLFAISGCKTLEKKVAMAIYASFLDH
BO06490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-PB | 340 | CG3024-PB | 1..340 | 1..340 | 1754 | 100 | Plus |
| Torsin-PA | 340 | CG3024-PA | 1..340 | 1..340 | 1754 | 100 | Plus |
