Clone BO06492 Report

Search the DGRC for BO06492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:64
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptTom20-RA
Protein status:BO06492.pep: validated full length
Sequenced Size:547

Clone Sequence Records

BO06492.3prime Sequence

545 bp (544 high quality bases) assembled on 2005-12-03

> BO06492.3prime
ATGGTCTAGAAAGCTTGCTTCGAGGTCGTCGATACTTGCGTTTCCAGATG
AACACTCTATAATTTTGGCTCCGTCCAGTTGTTGCTCCGAGCTCTGCCCC
AAAACGATTGGCCCGTCGTTGCCCTCGGCCGCTCGATTGCCGAACTCCTG
CATCTTGACGATCAGCATCGCGAATACTTGAGCTGGAAGGGAGGATTGCA
GCACCTGCAGCAGACGAGCCGGCTGGCCACACACGACGATGGCATTCGCC
AAGTGCTCCACGCCACTCTCGAAATCTCCGCGGGCGATCAGGGTCTCGCC
CAGCTGGATTTCTTGAAGGAAATATCTTTCGATGGCTTCATGGTCGTTCA
GATTGGGAACTCCAGACTTGGCAGTGCCGGTTTTCTTGTTGCGACGGCGA
CGCTCACGGACTTTCTTCTTGTACTCGGGATCGCTGCGGCGCTTCTTGTC
GAAGTAGATGCAGTATCCAATAAACAGAGTTCCAGCTACTCCCGCTGCAA
TGCCGATTGCAGTTTTGTTCATTTCAATCATGTCGACTGATAACT

BO06492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7654-PA 516 Tom20-RA 1..513 531..19 2565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 1008 CG7654-RB 206..718 531..19 2565 100 Minus
Tom20-RA 743 CG7654-RA 80..592 531..19 2565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20001848..20002156 327..19 1545 100 Minus
3L 28110227 3L 20001167..20001298 531..400 660 100 Minus
3L 28110227 3L 20001361..20001436 401..326 380 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:58:02 has no hits.

BO06492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:10 Download gff for BO06492.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-PA 1..516 18..531 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:29 Download gff for BO06492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7654-PA 1..516 18..531 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:03 Download gff for BO06492.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..592 19..538 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:44 Download gff for BO06492.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..592 19..538 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:44 Download gff for BO06492.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20001361..20001436 326..401 100 -> Minus
3L 20001161..20001296 402..538 97 -> Minus
3L 20001850..20002156 19..325 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:03 Download gff for BO06492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19994261..19994396 402..538 97 -> Minus
arm_3L 19994461..19994536 326..401 100 -> Minus
arm_3L 19994950..19995256 19..325 100   Minus

BO06492.5prime Sequence

545 bp (544 high quality bases) assembled on 2005-12-03

> BO06492.5prime
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAAGCAAGCTTTCTAGACC

BO06492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7654-PA 516 Tom20-RA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 1008 CG7654-RB 206..718 17..529 2565 100 Plus
Tom20-RA 743 CG7654-RA 80..592 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20001848..20002156 221..529 1545 100 Plus
3L 28110227 3L 20001167..20001298 17..148 660 100 Plus
3L 28110227 3L 20001361..20001436 147..222 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:12:10 has no hits.

BO06492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:11 Download gff for BO06492.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-PA 1..516 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:31 Download gff for BO06492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7654-PA 1..516 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:10 Download gff for BO06492.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..592 10..529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:13 Download gff for BO06492.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 74..592 10..529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:13 Download gff for BO06492.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20001161..20001296 10..146 97 -> Plus
3L 20001361..20001436 147..222 100 -> Plus
3L 20001850..20002156 223..529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:10 Download gff for BO06492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19994261..19994396 10..146 97 -> Plus
arm_3L 19994461..19994536 147..222 100 -> Plus
arm_3L 19994950..19995256 223..529 100   Plus

BO06492.complete Sequence

547 bp (547 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630426

> BO06492.complete
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAAGCAAGCTTTCTAGACCAT

BO06492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 516 CG7654-PB 1..513 17..529 2565 100 Plus
Tom20-RA 516 CG7654-PA 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-RB 1008 CG7654-RB 206..718 17..529 2565 100 Plus
Tom20-RA 743 CG7654-RA 80..592 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20001848..20002156 221..529 1545 100 Plus
3L 28110227 3L 20001167..20001298 17..148 660 100 Plus
3L 28110227 3L 20001361..20001436 147..222 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:18 has no hits.

BO06492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:17 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 1..516 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:10 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 73..591 10..529 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:10 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 80..592 17..531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:17 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 73..591 10..529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:31 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
Tom20-RA 80..592 17..531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:31 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20001167..20001296 17..146 100 -> Plus
3L 20001361..20001436 147..222 100 -> Plus
3L 20001850..20002156 223..531 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:10 Download gff for BO06492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19994267..19994396 17..146 100 -> Plus
arm_3L 19994461..19994536 147..222 100 -> Plus
arm_3L 19994950..19995256 223..531 99   Plus

BO06492.pep Sequence

Translation from 16 to 547

> BO06492.pep
MIEMNKTAIGIAAGVAGTLFIGYCIYFDKKRRSDPEYKKKVRERRRRNKK
TGTAKSGVPNLNDHEAIERYFLQEIQLGETLIARGDFESGVEHLANAIVV
CGQPARLLQVLQSSLPAQVFAMLIVKMQEFGNRAAEGNDGPIVLGQSSEQ
QLDGAKIIECSSGNASIDDLEASFLDH

BO06492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Tom20-PB 171 CG7654-PB 1..171 1..171 865 100 Plus
Tom20-PA 171 CG7654-PA 1..171 1..171 865 100 Plus
tomboy20-PA 147 CG14690-PA 10..128 11..130 328 47.5 Plus