Clone Sequence Records
BO06492.3prime Sequence
545 bp (544 high quality bases) assembled on 2005-12-03
> BO06492.3prime
ATGGTCTAGAAAGCTTGCTTCGAGGTCGTCGATACTTGCGTTTCCAGATG
AACACTCTATAATTTTGGCTCCGTCCAGTTGTTGCTCCGAGCTCTGCCCC
AAAACGATTGGCCCGTCGTTGCCCTCGGCCGCTCGATTGCCGAACTCCTG
CATCTTGACGATCAGCATCGCGAATACTTGAGCTGGAAGGGAGGATTGCA
GCACCTGCAGCAGACGAGCCGGCTGGCCACACACGACGATGGCATTCGCC
AAGTGCTCCACGCCACTCTCGAAATCTCCGCGGGCGATCAGGGTCTCGCC
CAGCTGGATTTCTTGAAGGAAATATCTTTCGATGGCTTCATGGTCGTTCA
GATTGGGAACTCCAGACTTGGCAGTGCCGGTTTTCTTGTTGCGACGGCGA
CGCTCACGGACTTTCTTCTTGTACTCGGGATCGCTGCGGCGCTTCTTGTC
GAAGTAGATGCAGTATCCAATAAACAGAGTTCCAGCTACTCCCGCTGCAA
TGCCGATTGCAGTTTTGTTCATTTCAATCATGTCGACTGATAACT
BO06492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7654-PA | 516 | Tom20-RA | 1..513 | 531..19 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..718 | 531..19 | 2565 | 100 | Minus |
Tom20-RA | 743 | CG7654-RA | 80..592 | 531..19 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002156 | 327..19 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 20001167..20001298 | 531..400 | 660 | 100 | Minus |
3L | 28110227 | 3L | 20001361..20001436 | 401..326 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:58:02 has no hits.
BO06492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:10 Download gff for
BO06492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-PA | 1..516 | 18..531 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:29 Download gff for
BO06492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7654-PA | 1..516 | 18..531 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:03 Download gff for
BO06492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..592 | 19..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:44 Download gff for
BO06492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..592 | 19..538 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:44 Download gff for
BO06492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001361..20001436 | 326..401 | 100 | -> | Minus |
3L | 20001161..20001296 | 402..538 | 97 | -> | Minus |
3L | 20001850..20002156 | 19..325 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:03 Download gff for
BO06492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994261..19994396 | 402..538 | 97 | -> | Minus |
arm_3L | 19994461..19994536 | 326..401 | 100 | -> | Minus |
arm_3L | 19994950..19995256 | 19..325 | 100 | | Minus |
BO06492.5prime Sequence
545 bp (544 high quality bases) assembled on 2005-12-03
> BO06492.5prime
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAAGCAAGCTTTCTAGACC
BO06492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7654-PA | 516 | Tom20-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..718 | 17..529 | 2565 | 100 | Plus |
Tom20-RA | 743 | CG7654-RA | 80..592 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002156 | 221..529 | 1545 | 100 | Plus |
3L | 28110227 | 3L | 20001167..20001298 | 17..148 | 660 | 100 | Plus |
3L | 28110227 | 3L | 20001361..20001436 | 147..222 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:12:10 has no hits.
BO06492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:11 Download gff for
BO06492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-PA | 1..516 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:31 Download gff for
BO06492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7654-PA | 1..516 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:10 Download gff for
BO06492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..592 | 10..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:13 Download gff for
BO06492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 74..592 | 10..529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:13 Download gff for
BO06492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001161..20001296 | 10..146 | 97 | -> | Plus |
3L | 20001361..20001436 | 147..222 | 100 | -> | Plus |
3L | 20001850..20002156 | 223..529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:10 Download gff for
BO06492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994261..19994396 | 10..146 | 97 | -> | Plus |
arm_3L | 19994461..19994536 | 147..222 | 100 | -> | Plus |
arm_3L | 19994950..19995256 | 223..529 | 100 | | Plus |
BO06492.complete Sequence
547 bp (547 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630426
> BO06492.complete
GAAGTTATCAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTG
CAGCGGGAGTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGAC
AAGAAGCGCCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCG
CCGTCGCAACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGA
ACGACCATGAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGC
GAGACCCTGATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGC
GAATGCCATCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGC
AATCCTCCCTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAG
GAGTTCGGCAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGG
GCAGAGCTCGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCAT
CTGGAAACGCAAGTATCGACGACCTCGAAGCAAGCTTTCTAGACCAT
BO06492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 516 | CG7654-PB | 1..513 | 17..529 | 2565 | 100 | Plus |
Tom20-RA | 516 | CG7654-PA | 1..513 | 17..529 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..718 | 17..529 | 2565 | 100 | Plus |
Tom20-RA | 743 | CG7654-RA | 80..592 | 17..529 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002156 | 221..529 | 1545 | 100 | Plus |
3L | 28110227 | 3L | 20001167..20001298 | 17..148 | 660 | 100 | Plus |
3L | 28110227 | 3L | 20001361..20001436 | 147..222 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:18 has no hits.
BO06492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:17 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 1..516 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:10 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 73..591 | 10..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:10 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 80..592 | 17..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:17 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 73..591 | 10..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:31 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 80..592 | 17..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:31 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001167..20001296 | 17..146 | 100 | -> | Plus |
3L | 20001361..20001436 | 147..222 | 100 | -> | Plus |
3L | 20001850..20002156 | 223..531 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:10 Download gff for
BO06492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994267..19994396 | 17..146 | 100 | -> | Plus |
arm_3L | 19994461..19994536 | 147..222 | 100 | -> | Plus |
arm_3L | 19994950..19995256 | 223..531 | 99 | | Plus |
BO06492.pep Sequence
Translation from 16 to 547
> BO06492.pep
MIEMNKTAIGIAAGVAGTLFIGYCIYFDKKRRSDPEYKKKVRERRRRNKK
TGTAKSGVPNLNDHEAIERYFLQEIQLGETLIARGDFESGVEHLANAIVV
CGQPARLLQVLQSSLPAQVFAMLIVKMQEFGNRAAEGNDGPIVLGQSSEQ
QLDGAKIIECSSGNASIDDLEASFLDH
BO06492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-PB | 171 | CG7654-PB | 1..171 | 1..171 | 865 | 100 | Plus |
Tom20-PA | 171 | CG7654-PA | 1..171 | 1..171 | 865 | 100 | Plus |
tomboy20-PA | 147 | CG14690-PA | 10..128 | 11..130 | 328 | 47.5 | Plus |