Clone Sequence Records
BO06505.3prime Sequence
869 bp (798 high quality bases) assembled on 2005-12-03
> BO06505.3prime
ATGGTCTAGAAAGCTTGCCAAAATCTTAACCTCGCGCGGCTTGGGCGTGT
CCAGCATGCTGTCCAGCCGCTGCAATGCATTGAACCGCCCTCCGTCCATG
TGTTCCACCTTGAAATCTTTGGCCGGCACTGGCGATACTCGTTTCACTTT
GGGCTTGGGTCCTCTGCTCTTGCCGCTCCTGGTCTCGCCAACTACGAAGT
TTTTGAATCGACTCGGGCGTATGGGCGATCGGCCGGAGCGGCGTGCAGGC
TTGGCCTCAACGGAGCTGGATCTGGAATTCTGCTGTGATGGACTGTGCGA
TCGCTTAATGCGGTTGCTCTGCTGCGAGGAACTGGGGCTGCTGGAAGAAG
CCTTATCCTTTTCGCCTCCTTGGGAAATGGACCTGCGCTCGCTCTTGATC
TTGGTTGGTTGGCTGGCCGTGGTGGAGCTCTTGTCATCCTCGTTGTCGGC
GTCAATGTGCTTGGGCTTCGATTGTGTGCCCGCTTTTGGCTTGGATCCTG
AGTTTGCTACGCGGATCTTGCGGGATGTGGGTCTGGTGCCATTTGTTTCT
GCTTCCGTGGCAAGCTCGCGCTTGGCGGGAATGACGTCCACAATGGTGGT
GTCCTCTTGTGTTATGTACTGCAGCTGTAGGTCCAGGCAGAGATCCTTGG
AGCTGGACTCCGTACCGGCCAGAAGAGCGACCGTTGCAGGATGCGACTTA
TTGGTCGCCTGGACGCGCACGATGATGTGATCGATAATGAGCTCGGTGTC
CAGTTGGTAGGCATCCTGCCACTGCTTCAGGTTCTCGAACAGGCGCCATA
GACCACACTCAATCCGGCTCCACCGATCCGCGGTCATCCAATGGAAATCA
TTCTTGGGATTCCCGCTCA
BO06505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 963 | CG4951-RA | 122..960 | 857..19 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RA | 1074 | CG4951-RA | 171..1020 | 869..19 | 4230 | 99.9 | Minus |
CG4951-RB | 1591 | CG4951-RB | 171..1019 | 869..20 | 4225 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953887 | 479..869 | 1905 | 99.7 | Plus |
3R | 32079331 | 3R | 27953143..27953342 | 280..479 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 27952756..27952925 | 19..188 | 850 | 100 | Plus |
3R | 32079331 | 3R | 27952993..27953085 | 188..280 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:13:34 has no hits.
BO06505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:28 Download gff for
BO06505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 112..963 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:51 Download gff for
BO06505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 112..963 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:33 Download gff for
BO06505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 172..1029 | 8..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:29:15 Download gff for
BO06505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 172..1029 | 8..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:29:15 Download gff for
BO06505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27953144..27953341 | 281..478 | 100 | <- | Plus |
3R | 27952747..27952924 | 8..187 | 97 | <- | Plus |
3R | 27952993..27953085 | 188..280 | 100 | <- | Plus |
3R | 27953498..27953886 | 479..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:33 Download gff for
BO06505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778469..23778646 | 8..187 | 97 | <- | Plus |
arm_3R | 23778715..23778807 | 188..280 | 100 | <- | Plus |
arm_3R | 23778866..23779063 | 281..478 | 100 | <- | Plus |
arm_3R | 23779220..23779608 | 479..868 | 99 | | Plus |
BO06505.5prime Sequence
839 bp (713 high quality bases) assembled on 2005-12-03
> BO06505.5prime
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAGAGGACCCA
BO06505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 963 | CG4951-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RB | 1591 | CG4951-RB | 61..883 | 17..839 | 4115 | 100 | Plus |
CG4951-RA | 1074 | CG4951-RA | 61..883 | 17..839 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953949 | 516..65 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 27953143..27953342 | 715..516 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 27952993..27953085 | 807..715 | 465 | 100 | Minus |
3R | 32079331 | 3R | 27954002..27954052 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:28:32 has no hits.
BO06505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:29 Download gff for
BO06505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:52 Download gff for
BO06505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:23 Download gff for
BO06505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..882 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:51 Download gff for
BO06505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..882 | 17..838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:51 Download gff for
BO06505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27953144..27953341 | 517..714 | 100 | <- | Minus |
3R | 27953498..27953946 | 68..516 | 100 | <- | Minus |
3R | 27952894..27952924 | 808..838 | 100 | <- | Minus |
3R | 27952993..27953085 | 715..807 | 100 | <- | Minus |
3R | 27954002..27954052 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:23 Download gff for
BO06505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778616..23778646 | 808..838 | 100 | <- | Minus |
arm_3R | 23778715..23778807 | 715..807 | 100 | <- | Minus |
arm_3R | 23778866..23779063 | 517..714 | 100 | <- | Minus |
arm_3R | 23779220..23779668 | 68..516 | 100 | <- | Minus |
arm_3R | 23779724..23779774 | 17..67 | 100 | | Minus |
BO06505.complete Sequence
994 bp (994 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630427
> BO06505.complete
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTG
AAACGAGTATCGCCAGTGCCGGCCAAAGATTTCAAGGTGGAACACATGGA
CGGAGGGCGGTTCAATGCATTGCAGCGGCTGGACAGCATGCTGGACACGC
CCAAGCCGCGCGAGGTTAAGATTTTGGCAAGCTTTCTAGACCAT
BO06505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RA | 963 | CG4951-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
CG4951-RB | 1341 | CG4951-PB | 1..959 | 17..975 | 4795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-RA | 1074 | CG4951-RA | 61..1020 | 17..976 | 4800 | 100 | Plus |
CG4951-RB | 1591 | CG4951-RB | 61..1019 | 17..975 | 4795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27953498..27953949 | 516..65 | 2260 | 100 | Minus |
3R | 32079331 | 3R | 27953143..27953342 | 715..516 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 27952756..27952925 | 976..807 | 850 | 100 | Minus |
3R | 32079331 | 3R | 27952993..27953085 | 807..715 | 465 | 100 | Minus |
3R | 32079331 | 3R | 27954002..27954052 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:13:36 has no hits.
BO06505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:57 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 1..963 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:47 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1029 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:00 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1020 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:57 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1029 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:06 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4951-RA | 61..1020 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:06 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27952754..27952924 | 808..978 | 98 | <- | Minus |
3R | 27952993..27953085 | 715..807 | 100 | <- | Minus |
3R | 27953144..27953341 | 517..714 | 100 | <- | Minus |
3R | 27953498..27953946 | 68..516 | 100 | <- | Minus |
3R | 27954002..27954052 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:00 Download gff for
BO06505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23778476..23778646 | 808..978 | 98 | <- | Minus |
arm_3R | 23778715..23778807 | 715..807 | 100 | <- | Minus |
arm_3R | 23778866..23779063 | 517..714 | 100 | <- | Minus |
arm_3R | 23779220..23779668 | 68..516 | 100 | <- | Minus |
arm_3R | 23779724..23779774 | 17..67 | 100 | | Minus |
BO06505.pep Sequence
Translation from 16 to 994
> BO06505.pep
MSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHFERESKNDFHWMTA
DRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIVRVQATNKSHPATV
ALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKRELATEAETNGTRP
TSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTTASQPTKIKSERRS
ISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRSSSVEAKPARRSGR
SPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAKDFKVEHMDGGRFN
ALQRLDSMLDTPKPREVKILASFLDH
BO06505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4951-PA | 320 | CG4951-PA | 1..320 | 1..320 | 1645 | 100 | Plus |
CG4951-PB | 446 | CG4951-PB | 1..320 | 1..320 | 1645 | 100 | Plus |