Clone Sequence Records
BO06507.3prime Sequence
886 bp (864 high quality bases) assembled on 2005-12-03
> BO06507.3prime
ATGGTCTAGAAAGCTTGCGGAGTGCACCGAATACGAGGTGATCTTTCCGT
TGTCGTTGACCGTGGTCTGGGCTCCACGTCGACTGGTTCCGTCTCCGTTG
CTGTGGCTGAAGGACGAGACCGAGACGCCCTTGTAGCCACCACCGCTGCC
ACCACCTCCTCCGGAGCTGCTGGAGCTGGAGAACGAGGATCCACCACCGC
TTCCGCCGCCAAAGCGATTCACAATGTTGGGAGAGGCCGGATTGGATGGG
CTAATGAAGGCCGTCTGGCGATAGCCATTGGAACCGATAGATCCGGAAGC
TGATGCATAGCTGGGTGCATAGCGATGTGAGTTGTAGGATCCCGATCCAG
ATCCAGACCCGGATCCAGAGCTGGAACTGAAGCTAGAGCTGGTGCCTCCT
CTGTACCGATTCTGGCGCACTAGATTGTCGTGGTAGGCCTGTTGAGCGGC
GATCTGTTGCTGGATGCGAATATCGTTGTCGTTGACAAGAGATGCATCCG
CGGATGCATAAGCATTGCCAGCCGTGGCCAGACCAGTTATAGCTTGTTGG
TTGGCGAAGTTCTGGGCCAAAATATGATTCGTCAGCTGCTGGTGGAATAG
ATACGGATCGATGATGCCAAAGTTGGGTGAAGTGCCGCCATAGTCATCGT
AATCGTAATAGCCACTACCGCCACCACCACCGGTACCCACATAGCTGCTG
TGTCCACCGCCACTGTTATAGCTTCCCGTATAGCCACCGGCTCCTCCTCC
ACTGCTGGCATACCCTCCGGCGTAACCGCCGGCATATGCTCGTCGTCTGC
GGGTCGGAGCCGTTTTTGCTCCCGATGACTCTTCATTCAGAGCACTCATC
ACCACACAAATAAGTAGAACCTTCCACATGTCGACT
BO06507.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-PA | 864 | CG17549-RA | 1..861 | 879..19 | 4305 | 100 | Minus |
CG17549-PB | 789 | CG17549-RB | 336..786 | 469..19 | 2255 | 100 | Minus |
CG17549-PC | 789 | CG17549-RC | 336..786 | 469..19 | 2255 | 100 | Minus |
CG17549-PB | 789 | CG17549-RB | 1..335 | 879..545 | 1675 | 100 | Minus |
CG17549-PC | 789 | CG17549-RC | 1..335 | 879..545 | 1675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-RD | 1159 | CG17549-RD | 176..1036 | 879..19 | 4305 | 100 | Minus |
CG17549-RA | 1054 | CG17549-RA | 71..931 | 879..19 | 4305 | 100 | Minus |
CG17549-RE | 979 | CG17549-RE | 406..856 | 469..19 | 2255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19388040..19388315 | 545..820 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 19387537..19387769 | 237..469 | 1165 | 100 | Plus |
2L | 23513712 | 2L | 19387173..19387392 | 19..238 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 19387862..19387936 | 470..544 | 375 | 100 | Plus |
2L | 23513712 | 2L | 19388474..19388534 | 819..879 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:18:50 has no hits.
BO06507.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:32 Download gff for
BO06507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-PA | 1..864 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:56 Download gff for
BO06507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-PA | 1..864 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:16:56 Download gff for
BO06507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 19..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:45 Download gff for
BO06507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 19..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:45 Download gff for
BO06507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19387173..19387391 | 19..237 | 100 | <- | Plus |
2L | 19387538..19387769 | 238..469 | 100 | <- | Plus |
2L | 19387862..19387936 | 470..544 | 100 | <- | Plus |
2L | 19388040..19388313 | 545..818 | 100 | <- | Plus |
2L | 19388474..19388534 | 819..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:16:56 Download gff for
BO06507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19388040..19388313 | 545..818 | 100 | <- | Plus |
arm_2L | 19388474..19388534 | 819..879 | 100 | | Plus |
arm_2L | 19387173..19387391 | 19..237 | 100 | <- | Plus |
arm_2L | 19387538..19387769 | 238..469 | 100 | <- | Plus |
arm_2L | 19387862..19387936 | 470..544 | 100 | <- | Plus |
BO06507.5prime Sequence
893 bp (804 high quality bases) assembled on 2005-12-03
> BO06507.5prime
GAAGTTATCAGTCGACATGTGGAAGGTTCTACTTATTTGTGTGGTGATGA
GTGCTCTGAATGAAGAGTCATCGGGAGCAAAAACGGCTCCGACCCGCAGA
CGACGAGCATATGCCGGCGGTTACGCCGGAGGGTATGCCAGCAGTGGAGG
AGGAGCCGGTGGCTATACGGGAAGCTATAACAGTGGCGGTGGACACAGCA
GCTATGTGGGTACCGGTGGTGGTGGCGGTAGTGGCTATTACGATTACGAT
GACTATGGCGGCACTTCACCCAACTTTGGCATCATCGATCCGTATCTATT
CCACCAGCAGCTGACGAATCATATTTTGGCCCAGAACTTCGCCAACCAAC
AAGCTATAACTGGTCTGGCCACGGCTGGCAATGCTTATGCATCCGCGGAT
GCATCTCTTGTCAACGACAACGATATTCGCATCCAGCAACAGATCGCCGC
TCAACAGGCCTACCACGACAATCTAGTGCGCCAGAATCGGTACAGAGGAG
GCACCAGCTCTAGCTTCAGTTCCAGCTCTGGATCCGGGTCTGGATCTGGA
TCGGGATCCTACAACTCACATCGCTATGCACCCAGCTATGCATCAGCTTC
CGGATCTATCGGTTCCAATGGCTATCGCCAGACGGCCTTCATTAGCCCAT
CCAATCCGGCCTCTCCCAACATTGTGAATCGCTTTGGCGGCGGAAGCGGT
GGTGGATCCTCGTTCTCCAGCTCCAGCAGCTCCGGAGGAGGTGGTGGCAG
CGGTGGTGGCTACAAGGGCGTCTCGGTCTCGTCCTTCAGCCACAGCAACG
GAGACGGAACCAGTCGACGTGGAGCCCAGACCACGGTCAACGACAACGGA
AAGATCACCTCGTATTCGGTGCACTCCGCAAGCTTTCTAGACC
BO06507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-PA | 864 | CG17549-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17549-PB | 789 | CG17549-RB | 336..786 | 427..877 | 2255 | 100 | Plus |
CG17549-PC | 789 | CG17549-RC | 336..786 | 427..877 | 2255 | 100 | Plus |
CG17549-PB | 789 | CG17549-RB | 1..335 | 17..351 | 1675 | 100 | Plus |
CG17549-PC | 789 | CG17549-RC | 1..335 | 17..351 | 1675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-RD | 1159 | CG17549-RD | 176..1036 | 17..877 | 4305 | 100 | Plus |
CG17549-RA | 1054 | CG17549-RA | 71..931 | 17..877 | 4305 | 100 | Plus |
CG17549-RE | 979 | CG17549-RE | 406..856 | 427..877 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19388040..19388315 | 351..76 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19387537..19387769 | 659..427 | 1165 | 100 | Minus |
2L | 23513712 | 2L | 19387173..19387392 | 877..658 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 19387862..19387936 | 426..352 | 375 | 100 | Minus |
2L | 23513712 | 2L | 19388474..19388534 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:58:33 has no hits.
BO06507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:33 Download gff for
BO06507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-PA | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:24:57 Download gff for
BO06507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-PA | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:08 Download gff for
BO06507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:49 Download gff for
BO06507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 17..877 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:49 Download gff for
BO06507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19387173..19387391 | 659..877 | 100 | <- | Minus |
2L | 19387538..19387769 | 427..658 | 100 | <- | Minus |
2L | 19387862..19387936 | 352..426 | 100 | <- | Minus |
2L | 19388040..19388313 | 78..351 | 100 | <- | Minus |
2L | 19388474..19388534 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:08 Download gff for
BO06507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19388040..19388313 | 78..351 | 100 | <- | Minus |
arm_2L | 19388474..19388534 | 17..77 | 100 | | Minus |
arm_2L | 19387173..19387391 | 659..877 | 100 | <- | Minus |
arm_2L | 19387538..19387769 | 427..658 | 100 | <- | Minus |
arm_2L | 19387862..19387936 | 352..426 | 100 | <- | Minus |
BO06507.complete Sequence
895 bp (895 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630428
> BO06507.complete
GAAGTTATCAGTCGACATGTGGAAGGTTCTACTTATTTGTGTGGTGATGA
GTGCTCTGAATGAAGAGTCATCGGGAGCAAAAACGGCTCCGACCCGCAGA
CGACGAGCATATGCCGGCGGTTACGCCGGAGGGTATGCCAGCAGTGGAGG
AGGAGCCGGTGGCTATACGGGAAGCTATAACAGTGGCGGTGGACACAGCA
GCTATGTGGGTACCGGTGGTGGTGGCGGTAGTGGCTATTACGATTACGAT
GACTATGGCGGCACTTCACCCAACTTTGGCATCATCGATCCGTATCTATT
CCACCAGCAGCTGACGAATCATATTTTGGCCCAGAACTTCGCCAACCAAC
AAGCTATAACTGGTCTGGCCACGGCTGGCAATGCTTATGCATCCGCGGAT
GCATCTCTTGTCAACGACAACGATATTCGCATCCAGCAACAGATCGCCGC
TCAACAGGCCTACCACGACAATCTAGTGCGCCAGAATCGGTACAGAGGAG
GCACCAGCTCTAGCTTCAGTTCCAGCTCTGGATCCGGGTCTGGATCTGGA
TCGGGATCCTACAACTCACATCGCTATGCACCCAGCTATGCATCAGCTTC
CGGATCTATCGGTTCCAATGGCTATCGCCAGACGGCCTTCATTAGCCCAT
CCAATCCGGCCTCTCCCAACATTGTGAATCGCTTTGGCGGCGGAAGCGGT
GGTGGATCCTCGTTCTCCAGCTCCAGCAGCTCCGGAGGAGGTGGTGGCAG
CGGTGGTGGCTACAAGGGCGTCTCGGTCTCGTCCTTCAGCCACAGCAACG
GAGACGGAACCAGTCGACGTGGAGCCCAGACCACGGTCAACGACAACGGA
AAGATCACCTCGTATTCGGTGCACTCCGCAAGCTTTCTAGACCAT
BO06507.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-RD | 864 | CG17549-PD | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17549-RA | 864 | CG17549-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG17549-RE | 789 | CG17549-PE | 336..786 | 427..877 | 2255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-RD | 1159 | CG17549-RD | 176..1036 | 17..877 | 4305 | 100 | Plus |
CG17549-RA | 1054 | CG17549-RA | 71..931 | 17..877 | 4305 | 100 | Plus |
CG17549-RE | 979 | CG17549-RE | 406..856 | 427..877 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19388040..19388315 | 351..76 | 1380 | 100 | Minus |
2L | 23513712 | 2L | 19387537..19387769 | 659..427 | 1165 | 100 | Minus |
2L | 23513712 | 2L | 19387173..19387392 | 877..658 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 19387862..19387936 | 426..352 | 375 | 100 | Minus |
2L | 23513712 | 2L | 19388474..19388534 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:02:22 has no hits.
BO06507.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:58 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:48 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:13 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:58 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:32 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17549-RA | 71..931 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:32 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19387538..19387769 | 427..658 | 100 | <- | Minus |
2L | 19387862..19387936 | 352..426 | 100 | <- | Minus |
2L | 19388040..19388313 | 78..351 | 100 | <- | Minus |
2L | 19388474..19388534 | 17..77 | 100 | | Minus |
2L | 19387171..19387391 | 659..879 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:13 Download gff for
BO06507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19387538..19387769 | 427..658 | 100 | <- | Minus |
arm_2L | 19387862..19387936 | 352..426 | 100 | <- | Minus |
arm_2L | 19387171..19387391 | 659..879 | 99 | <- | Minus |
arm_2L | 19388040..19388313 | 78..351 | 100 | <- | Minus |
arm_2L | 19388474..19388534 | 17..77 | 100 | | Minus |
BO06507.pep Sequence
Translation from 16 to 895
> BO06507.pep
MWKVLLICVVMSALNEESSGAKTAPTRRRRAYAGGYAGGYASSGGGAGGY
TGSYNSGGGHSSYVGTGGGGGSGYYDYDDYGGTSPNFGIIDPYLFHQQLT
NHILAQNFANQQAITGLATAGNAYASADASLVNDNDIRIQQQIAAQQAYH
DNLVRQNRYRGGTSSSFSSSSGSGSGSGSGSYNSHRYAPSYASASGSIGS
NGYRQTAFISPSNPASPNIVNRFGGGSGGGSSFSSSSSSGGGGGSGGGYK
GVSVSSFSHSNGDGTSRRGAQTTVNDNGKITSYSVHSASFLDH
BO06507.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17549-PD | 287 | CG17549-PD | 1..287 | 1..287 | 1501 | 100 | Plus |
CG17549-PA | 287 | CG17549-PA | 1..287 | 1..287 | 1501 | 100 | Plus |
CG17549-PE | 262 | CG17549-PE | 1..262 | 1..287 | 1339 | 90.9 | Plus |
CG17549-PC | 262 | CG17549-PC | 1..262 | 1..287 | 1339 | 90.9 | Plus |
CG17549-PB | 262 | CG17549-PB | 1..262 | 1..287 | 1339 | 90.9 | Plus |