Clone Sequence Records
BO06513.3prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-03
> BO06513.3prime
ATGGTCTAGAAAGCTTGCTGTTCGCTTCTGATCGCCCAAATCCTCGATGA
CGTCCTCATCGATCTCGGCCCATTTTTCGGGTATGACATCGAACAAGTCA
TCCTTGACGTCACCCTGAATGACGATCTCGTCGTCTCCGGTAACCGAGGA
GCCGCAGGCAAATTTCGTGCCAAAGAACTTGGCGGCCACCTTGAGATCAA
TATCAAAAGTGCTCAATCCTGTGACCACGGTCACTGACTTCTTTTTGCCA
CGTGCCGCCCGCGAGACGCAGATACGCTTGGGCACGTCCTCTTTCTTCTT
GACGCGCAACAGTCCCTTGCCACCGCGTTTCTGGCGCTTCTTGTCGTCAT
CCGTCCCGTCAGCGGCGGCAGCCTCCTCCTCAATCTTTAGTCGCTCGAAG
TCATCGGGCATGTGGAGCTCCAGCCACTCCTTGCACTTCTCGTACTCCGG
ATAGTACTCGCAGTACTCAATGGGCATCGTGCAGTGGCCACAGTACTTCA
TCTGGATCGGATAGGTGACGCCTTCGCGCGGACCCAACTGTAGGCGGTCG
GCGACGCTGTTGGTGCCCACATCTTCGTTCGTCATGTCGACTGATAACT
BO06513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-PA | 570 | CG9099-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 689 | CG9099-RB | 52..618 | 585..19 | 2835 | 100 | Minus |
CG9099-RA | 729 | CG9099-RA | 92..658 | 585..19 | 2835 | 100 | Minus |
Rcp-RB | 1080 | CG4875-RB | 838..1023 | 19..204 | 930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885967..16886230 | 204..467 | 1320 | 100 | Plus |
X | 23542271 | X | 16885617..16885802 | 19..204 | 930 | 100 | Plus |
X | 23542271 | X | 16886318..16886437 | 466..585 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:29:24 has no hits.
BO06513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:43 Download gff for
BO06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:11 Download gff for
BO06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:25 Download gff for
BO06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..661 | 15..595 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:31 Download gff for
BO06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..661 | 15..595 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:31 Download gff for
BO06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885613..16885801 | 15..203 | 98 | <- | Plus |
X | 16885967..16886228 | 204..465 | 100 | <- | Plus |
X | 16886318..16886444 | 466..595 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:25 Download gff for
BO06513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16779646..16779834 | 15..203 | 98 | <- | Plus |
arm_X | 16780000..16780261 | 204..465 | 100 | <- | Plus |
arm_X | 16780351..16780477 | 466..595 | 96 | | Plus |
BO06513.5prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-03
> BO06513.5prime
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACAGCAAGCTTTCTAGACC
BO06513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-PA | 570 | CG9099-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 689 | CG9099-RB | 52..618 | 17..583 | 2835 | 100 | Plus |
CG9099-RA | 729 | CG9099-RA | 92..658 | 17..583 | 2835 | 100 | Plus |
Rcp-RB | 1080 | CG4875-RB | 838..1023 | 583..398 | 930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885967..16886230 | 398..135 | 1320 | 100 | Minus |
X | 23542271 | X | 16885617..16885802 | 583..398 | 930 | 100 | Minus |
X | 23542271 | X | 16886318..16886437 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:55:41 has no hits.
BO06513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:44 Download gff for
BO06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:13 Download gff for
BO06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:07 Download gff for
BO06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..661 | 7..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:23 Download gff for
BO06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 85..661 | 7..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:23 Download gff for
BO06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885613..16885801 | 399..587 | 98 | <- | Minus |
X | 16885967..16886228 | 137..398 | 100 | <- | Minus |
X | 16886318..16886444 | 7..136 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:07 Download gff for
BO06513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16779646..16779834 | 399..587 | 98 | <- | Minus |
arm_X | 16780000..16780261 | 137..398 | 100 | <- | Minus |
arm_X | 16780351..16780477 | 7..136 | 96 | | Minus |
BO06513.complete Sequence
601 bp (601 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630429
> BO06513.complete
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACAGCAAGCTTTCTAGACCA
T
BO06513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 570 | CG9099-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
CG9099-RA | 570 | CG9099-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-RB | 689 | CG9099-RB | 52..618 | 17..583 | 2835 | 100 | Plus |
CG9099-RA | 729 | CG9099-RA | 92..658 | 17..583 | 2835 | 100 | Plus |
Rcp-RB | 1080 | CG4875-RB | 838..1023 | 583..398 | 930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16885967..16886230 | 398..135 | 1320 | 100 | Minus |
X | 23542271 | X | 16885617..16885802 | 583..398 | 930 | 100 | Minus |
X | 23542271 | X | 16886318..16886437 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:27 has no hits.
BO06513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:59 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:50 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 82..658 | 7..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:13 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 92..658 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:01 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 82..658 | 7..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:47 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9099-RA | 92..658 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:47 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16885615..16885801 | 399..585 | 98 | <- | Minus |
X | 16885967..16886228 | 137..398 | 100 | <- | Minus |
X | 16886318..16886437 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:13 Download gff for
BO06513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16779648..16779834 | 399..585 | 98 | <- | Minus |
arm_X | 16780000..16780261 | 137..398 | 100 | <- | Minus |
arm_X | 16780351..16780470 | 17..136 | 100 | | Minus |
BO06513.pep Sequence
Translation from 16 to 601
> BO06513.pep
MTNEDVGTNSVADRLQLGPREGVTYPIQMKYCGHCTMPIEYCEYYPEYEK
CKEWLELHMPDDFERLKIEEEAAAADGTDDDKKRQKRGGKGLLRVKKKED
VPKRICVSRAARGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTG
DDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDQKRTASFLDH
BO06513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9099-PB | 189 | CG9099-PB | 1..189 | 1..189 | 1004 | 100 | Plus |
CG9099-PA | 189 | CG9099-PA | 1..189 | 1..189 | 1004 | 100 | Plus |