Clone BO06513 Report

Search the DGRC for BO06513

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG9099-RA
Protein status:BO06513.pep: validated full length
Sequenced Size:601

Clone Sequence Records

BO06513.3prime Sequence

599 bp (598 high quality bases) assembled on 2005-12-03

> BO06513.3prime
ATGGTCTAGAAAGCTTGCTGTTCGCTTCTGATCGCCCAAATCCTCGATGA
CGTCCTCATCGATCTCGGCCCATTTTTCGGGTATGACATCGAACAAGTCA
TCCTTGACGTCACCCTGAATGACGATCTCGTCGTCTCCGGTAACCGAGGA
GCCGCAGGCAAATTTCGTGCCAAAGAACTTGGCGGCCACCTTGAGATCAA
TATCAAAAGTGCTCAATCCTGTGACCACGGTCACTGACTTCTTTTTGCCA
CGTGCCGCCCGCGAGACGCAGATACGCTTGGGCACGTCCTCTTTCTTCTT
GACGCGCAACAGTCCCTTGCCACCGCGTTTCTGGCGCTTCTTGTCGTCAT
CCGTCCCGTCAGCGGCGGCAGCCTCCTCCTCAATCTTTAGTCGCTCGAAG
TCATCGGGCATGTGGAGCTCCAGCCACTCCTTGCACTTCTCGTACTCCGG
ATAGTACTCGCAGTACTCAATGGGCATCGTGCAGTGGCCACAGTACTTCA
TCTGGATCGGATAGGTGACGCCTTCGCGCGGACCCAACTGTAGGCGGTCG
GCGACGCTGTTGGTGCCCACATCTTCGTTCGTCATGTCGACTGATAACT

BO06513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-PA 570 CG9099-RA 1..567 585..19 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 689 CG9099-RB 52..618 585..19 2835 100 Minus
CG9099-RA 729 CG9099-RA 92..658 585..19 2835 100 Minus
Rcp-RB 1080 CG4875-RB 838..1023 19..204 930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885967..16886230 204..467 1320 100 Plus
X 23542271 X 16885617..16885802 19..204 930 100 Plus
X 23542271 X 16886318..16886437 466..585 600 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:29:24 has no hits.

BO06513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:43 Download gff for BO06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 15..585 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:11 Download gff for BO06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 15..585 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:25 Download gff for BO06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..661 15..595 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:31 Download gff for BO06513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..661 15..595 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:31 Download gff for BO06513.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16885613..16885801 15..203 98 <- Plus
X 16885967..16886228 204..465 100 <- Plus
X 16886318..16886444 466..595 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:25 Download gff for BO06513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16779646..16779834 15..203 98 <- Plus
arm_X 16780000..16780261 204..465 100 <- Plus
arm_X 16780351..16780477 466..595 96   Plus

BO06513.5prime Sequence

599 bp (598 high quality bases) assembled on 2005-12-03

> BO06513.5prime
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACAGCAAGCTTTCTAGACC

BO06513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-PA 570 CG9099-RA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 689 CG9099-RB 52..618 17..583 2835 100 Plus
CG9099-RA 729 CG9099-RA 92..658 17..583 2835 100 Plus
Rcp-RB 1080 CG4875-RB 838..1023 583..398 930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885967..16886230 398..135 1320 100 Minus
X 23542271 X 16885617..16885802 583..398 930 100 Minus
X 23542271 X 16886318..16886437 136..17 600 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:55:41 has no hits.

BO06513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:44 Download gff for BO06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 17..587 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:13 Download gff for BO06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-PA 1..570 17..587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:07 Download gff for BO06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..661 7..587 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:23 Download gff for BO06513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 85..661 7..587 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:23 Download gff for BO06513.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16885613..16885801 399..587 98 <- Minus
X 16885967..16886228 137..398 100 <- Minus
X 16886318..16886444 7..136 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:07 Download gff for BO06513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16779646..16779834 399..587 98 <- Minus
arm_X 16780000..16780261 137..398 100 <- Minus
arm_X 16780351..16780477 7..136 96   Minus

BO06513.complete Sequence

601 bp (601 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630429

> BO06513.complete
GAAGTTATCAGTCGACATGACGAACGAAGATGTGGGCACCAACAGCGTCG
CCGACCGCCTACAGTTGGGTCCGCGCGAAGGCGTCACCTATCCGATCCAG
ATGAAGTACTGTGGCCACTGCACGATGCCCATTGAGTACTGCGAGTACTA
TCCGGAGTACGAGAAGTGCAAGGAGTGGCTGGAGCTCCACATGCCCGATG
ACTTCGAGCGACTAAAGATTGAGGAGGAGGCTGCCGCCGCTGACGGGACG
GATGACGACAAGAAGCGCCAGAAACGCGGTGGCAAGGGACTGTTGCGCGT
CAAGAAGAAAGAGGACGTGCCCAAGCGTATCTGCGTCTCGCGGGCGGCAC
GTGGCAAAAAGAAGTCAGTGACCGTGGTCACAGGATTGAGCACTTTTGAT
ATTGATCTCAAGGTGGCCGCCAAGTTCTTTGGCACGAAATTTGCCTGCGG
CTCCTCGGTTACCGGAGACGACGAGATCGTCATTCAGGGTGACGTCAAGG
ATGACTTGTTCGATGTCATACCCGAAAAATGGGCCGAGATCGATGAGGAC
GTCATCGAGGATTTGGGCGATCAGAAGCGAACAGCAAGCTTTCTAGACCA
T

BO06513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 570 CG9099-PB 1..567 17..583 2835 100 Plus
CG9099-RA 570 CG9099-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-RB 689 CG9099-RB 52..618 17..583 2835 100 Plus
CG9099-RA 729 CG9099-RA 92..658 17..583 2835 100 Plus
Rcp-RB 1080 CG4875-RB 838..1023 583..398 930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16885967..16886230 398..135 1320 100 Minus
X 23542271 X 16885617..16885802 583..398 930 100 Minus
X 23542271 X 16886318..16886437 136..17 600 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:04:27 has no hits.

BO06513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:59 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 1..570 17..587 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:50 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 82..658 7..587 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:13 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 92..658 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:01 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 82..658 7..587 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:47 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
CG9099-RA 92..658 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:47 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
X 16885615..16885801 399..585 98 <- Minus
X 16885967..16886228 137..398 100 <- Minus
X 16886318..16886437 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:13 Download gff for BO06513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16779648..16779834 399..585 98 <- Minus
arm_X 16780000..16780261 137..398 100 <- Minus
arm_X 16780351..16780470 17..136 100   Minus

BO06513.pep Sequence

Translation from 16 to 601

> BO06513.pep
MTNEDVGTNSVADRLQLGPREGVTYPIQMKYCGHCTMPIEYCEYYPEYEK
CKEWLELHMPDDFERLKIEEEAAAADGTDDDKKRQKRGGKGLLRVKKKED
VPKRICVSRAARGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTG
DDEIVIQGDVKDDLFDVIPEKWAEIDEDVIEDLGDQKRTASFLDH

BO06513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9099-PB 189 CG9099-PB 1..189 1..189 1004 100 Plus
CG9099-PA 189 CG9099-PA 1..189 1..189 1004 100 Plus