Clone Sequence Records
BO06514.3prime Sequence
566 bp (565 high quality bases) assembled on 2005-12-03
> BO06514.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTACCCGCCGGCACCACCAGCACCAC
CGCCGCCGCCGCCACGAGCTCCTGGCTGTGGTCCCTGCGGGTACGTGGCC
TCGCCCTCGTAGCTCACGTCCGCGTGGTAGCCCGTCTTCCAGTCGGCGGT
GTAGCGGACGATCTGGGTCCTTCCGTCGGGCATCTGGACGCGGTACTCGC
CGGTCACCACGTCACCATCACTGGACGCCTTGTGCGCATAATCGTTGGCG
GTCTCCGGATCCTGAACGGCGTACTCGAAGTCGTACGGCATGCCGGGCAC
GTGGACATGGTCATCGCCTGGCTGGCCAGGTATGTTGCGGGGAGTGCCAG
GAGGTGCGGGTGGCCGGGGTCCAGGTGCCGCTGGTCTTCCAGGTGGGCCG
GGCTTGAATGGGGTCTTGGGTTCCGAGTAGTCGTAGCCATTCTTGGTGGG
CGGGAGGTACGCGTTGGAGCCAGGGGCGATCTGGGCGTAGGCATAGGCAC
TGATGGCAGCGAGGGATAAGCTAAGCAGGACGAACGACTTGAAGGACATC
ATGTCGACTGATAACT
BO06514.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6305-PA | 537 | CG6305-RA | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr50Cb-RA | 867 | CG6305-RA | 234..767 | 552..19 | 2670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13804838..13805131 | 312..19 | 1470 | 100 | Minus |
2R | 25286936 | 2R | 13803625..13803741 | 522..406 | 585 | 100 | Minus |
2R | 25286936 | 2R | 13804363..13804456 | 405..312 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:58:44 has no hits.
BO06514.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:45 Download gff for
BO06514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6305-PA | 1..537 | 18..552 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:14 Download gff for
BO06514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6305-PA | 1..537 | 18..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:10 Download gff for
BO06514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 234..772 | 13..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:50 Download gff for
BO06514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 234..772 | 13..552 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:50 Download gff for
BO06514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13804363..13804455 | 313..405 | 100 | -> | Minus |
2R | 13803625..13803741 | 406..522 | 100 | -> | Minus |
2R | 13795176..13795205 | 523..552 | 100 | -> | Minus |
2R | 13804838..13805136 | 13..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:10 Download gff for
BO06514.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9682681..9682710 | 523..552 | 100 | -> | Minus |
arm_2R | 9691130..9691246 | 406..522 | 100 | -> | Minus |
arm_2R | 9691868..9691960 | 313..405 | 100 | -> | Minus |
arm_2R | 9692343..9692641 | 13..312 | 99 | | Minus |
BO06514.5prime Sequence
566 bp (565 high quality bases) assembled on 2005-12-03
> BO06514.5prime
GAAGTTATCAGTCGACATGATGTCCTTCAAGTCGTTCGTCCTGCTTAGCT
TATCCCTCGCTGCCATCAGTGCCTATGCCTACGCCCAGATCGCCCCTGGC
TCCAACGCGTACCTCCCGCCCACCAAGAATGGCTACGACTACTCGGAACC
CAAGACCCCATTCAAGCCCGGCCCACCTGGAAGACCAGCGGCACCTGGAC
CCCGGCCACCCGCACCTCCTGGCACTCCCCGCAACATACCTGGCCAGCCA
GGCGATGACCATGTCCACGTGCCCGGCATGCCGTACGACTTCGAGTACGC
CGTTCAGGATCCGGAGACCGCCAACGATTATGCGCACAAGGCGTCCAGTG
ATGGTGACGTGGTGACCGGCGAGTACCGCGTCCAGATGCCCGACGGAAGG
ACCCAGATCGTCCGCTACACCGCCGACTGGAAGACGGGCTACCACGCGGA
CGTGAGCTACGAGGGCGAGGCCACGTACCCGCAGGGACCACAGCCAGGAG
CTCGTGGCGGCGGCGGCGGTGGTGCTGGTGGTGCCGGCGGGTACAAGTAC
GCAAGCTTTCTAGACC
BO06514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6305-PA | 537 | CG6305-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr50Cb-RA | 867 | CG6305-RA | 234..767 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13804838..13805131 | 257..550 | 1470 | 100 | Plus |
2R | 25286936 | 2R | 13803625..13803741 | 47..163 | 585 | 100 | Plus |
2R | 25286936 | 2R | 13804363..13804456 | 164..257 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:50:51 has no hits.
BO06514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:46 Download gff for
BO06514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6305-PA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:16 Download gff for
BO06514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6305-PA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:33 Download gff for
BO06514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 234..772 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:23 Download gff for
BO06514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 234..772 | 17..556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:23 Download gff for
BO06514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13795176..13795205 | 17..46 | 100 | -> | Plus |
2R | 13803625..13803741 | 47..163 | 100 | -> | Plus |
2R | 13804363..13804455 | 164..256 | 100 | -> | Plus |
2R | 13804838..13805136 | 257..556 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:33 Download gff for
BO06514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9682681..9682710 | 17..46 | 100 | -> | Plus |
arm_2R | 9691130..9691246 | 47..163 | 100 | -> | Plus |
arm_2R | 9691868..9691960 | 164..256 | 100 | -> | Plus |
arm_2R | 9692343..9692641 | 257..556 | 99 | | Plus |
BO06514.complete Sequence
568 bp (568 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630430
> BO06514.complete
GAAGTTATCAGTCGACATGATGTCCTTCAAGTCGTTCGTCCTGCTTAGCT
TATCCCTCGCTGCCATCAGTGCCTATGCCTACGCCCAGATCGCCCCTGGC
TCCAACGCGTACCTCCCGCCCACCAAGAATGGCTACGACTACTCGGAACC
CAAGACCCCATTCAAGCCCGGCCCACCTGGAAGACCAGCGGCACCTGGAC
CCCGGCCACCCGCACCTCCTGGCACTCCCCGCAACATACCTGGCCAGCCA
GGCGATGACCATGTCCACGTGCCCGGCATGCCGTACGACTTCGAGTACGC
CGTTCAGGATCCGGAGACCGCCAACGATTATGCGCACAAGGCGTCCAGTG
ATGGTGACGTGGTGACCGGCGAGTACCGCGTCCAGATGCCCGACGGAAGG
ACCCAGATCGTCCGCTACACCGCCGACTGGAAGACGGGCTACCACGCGGA
CGTGAGCTACGAGGGCGAGGCCACGTACCCGCAGGGACCACAGCCAGGAG
CTCGTGGCGGCGGCGGCGGTGGTGCTGGTGGTGCCGGCGGGTACAAGTAC
GCAAGCTTTCTAGACCAT
BO06514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr50Cb-RA | 537 | CG6305-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr50Cb-RA | 867 | CG6305-RA | 234..767 | 17..550 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13804838..13805131 | 257..550 | 1470 | 100 | Plus |
2R | 25286936 | 2R | 13803625..13803741 | 47..163 | 585 | 100 | Plus |
2R | 25286936 | 2R | 13804363..13804456 | 164..257 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:13 has no hits.
BO06514.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:02 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 1..537 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:52 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 208..746 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:52 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 234..767 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:02 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 208..746 | 17..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:45 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr50Cb-RA | 234..767 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:45 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13795176..13795205 | 17..46 | 100 | -> | Plus |
2R | 13803625..13803741 | 47..163 | 100 | -> | Plus |
2R | 13804363..13804455 | 164..256 | 100 | -> | Plus |
2R | 13804838..13805131 | 257..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:52 Download gff for
BO06514.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9682681..9682710 | 17..46 | 100 | -> | Plus |
arm_2R | 9691130..9691246 | 47..163 | 100 | -> | Plus |
arm_2R | 9691868..9691960 | 164..256 | 100 | -> | Plus |
arm_2R | 9692343..9692636 | 257..552 | 99 | | Plus |
BO06514.pep Sequence
Translation from 16 to 568
> BO06514.pep
MMSFKSFVLLSLSLAAISAYAYAQIAPGSNAYLPPTKNGYDYSEPKTPFK
PGPPGRPAAPGPRPPAPPGTPRNIPGQPGDDHVHVPGMPYDFEYAVQDPE
TANDYAHKASSDGDVVTGEYRVQMPDGRTQIVRYTADWKTGYHADVSYEG
EATYPQGPQPGARGGGGGGAGGAGGYKYASFLDH
BO06514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr50Cb-PA | 178 | CG6305-PA | 1..178 | 1..178 | 985 | 100 | Plus |
resilin-PA | 620 | CG15920-PA | 272..428 | 26..176 | 209 | 35.4 | Plus |
Cpr56F-PA | 217 | CG9036-PA | 2..203 | 5..175 | 202 | 30.8 | Plus |
Cpr76Bd-PD | 1228 | CG9299-PD | 1108..1209 | 57..146 | 176 | 37.3 | Plus |
Cpr76Bd-PB | 1228 | CG9299-PB | 1108..1209 | 57..146 | 176 | 37.3 | Plus |