Clone BO06514 Report

Search the DGRC for BO06514

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCpr50Cb-RA
Protein status:BO06514.pep: validated full length
Sequenced Size:568

Clone Sequence Records

BO06514.3prime Sequence

566 bp (565 high quality bases) assembled on 2005-12-03

> BO06514.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTACCCGCCGGCACCACCAGCACCAC
CGCCGCCGCCGCCACGAGCTCCTGGCTGTGGTCCCTGCGGGTACGTGGCC
TCGCCCTCGTAGCTCACGTCCGCGTGGTAGCCCGTCTTCCAGTCGGCGGT
GTAGCGGACGATCTGGGTCCTTCCGTCGGGCATCTGGACGCGGTACTCGC
CGGTCACCACGTCACCATCACTGGACGCCTTGTGCGCATAATCGTTGGCG
GTCTCCGGATCCTGAACGGCGTACTCGAAGTCGTACGGCATGCCGGGCAC
GTGGACATGGTCATCGCCTGGCTGGCCAGGTATGTTGCGGGGAGTGCCAG
GAGGTGCGGGTGGCCGGGGTCCAGGTGCCGCTGGTCTTCCAGGTGGGCCG
GGCTTGAATGGGGTCTTGGGTTCCGAGTAGTCGTAGCCATTCTTGGTGGG
CGGGAGGTACGCGTTGGAGCCAGGGGCGATCTGGGCGTAGGCATAGGCAC
TGATGGCAGCGAGGGATAAGCTAAGCAGGACGAACGACTTGAAGGACATC
ATGTCGACTGATAACT

BO06514.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6305-PA 537 CG6305-RA 1..534 552..19 2670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr50Cb-RA 867 CG6305-RA 234..767 552..19 2670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13804838..13805131 312..19 1470 100 Minus
2R 25286936 2R 13803625..13803741 522..406 585 100 Minus
2R 25286936 2R 13804363..13804456 405..312 470 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:58:44 has no hits.

BO06514.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:45 Download gff for BO06514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6305-PA 1..537 18..552 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:14 Download gff for BO06514.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6305-PA 1..537 18..552 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:10 Download gff for BO06514.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 234..772 13..552 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:50 Download gff for BO06514.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 234..772 13..552 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:50 Download gff for BO06514.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13804363..13804455 313..405 100 -> Minus
2R 13803625..13803741 406..522 100 -> Minus
2R 13795176..13795205 523..552 100 -> Minus
2R 13804838..13805136 13..312 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:10 Download gff for BO06514.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9682681..9682710 523..552 100 -> Minus
arm_2R 9691130..9691246 406..522 100 -> Minus
arm_2R 9691868..9691960 313..405 100 -> Minus
arm_2R 9692343..9692641 13..312 99   Minus

BO06514.5prime Sequence

566 bp (565 high quality bases) assembled on 2005-12-03

> BO06514.5prime
GAAGTTATCAGTCGACATGATGTCCTTCAAGTCGTTCGTCCTGCTTAGCT
TATCCCTCGCTGCCATCAGTGCCTATGCCTACGCCCAGATCGCCCCTGGC
TCCAACGCGTACCTCCCGCCCACCAAGAATGGCTACGACTACTCGGAACC
CAAGACCCCATTCAAGCCCGGCCCACCTGGAAGACCAGCGGCACCTGGAC
CCCGGCCACCCGCACCTCCTGGCACTCCCCGCAACATACCTGGCCAGCCA
GGCGATGACCATGTCCACGTGCCCGGCATGCCGTACGACTTCGAGTACGC
CGTTCAGGATCCGGAGACCGCCAACGATTATGCGCACAAGGCGTCCAGTG
ATGGTGACGTGGTGACCGGCGAGTACCGCGTCCAGATGCCCGACGGAAGG
ACCCAGATCGTCCGCTACACCGCCGACTGGAAGACGGGCTACCACGCGGA
CGTGAGCTACGAGGGCGAGGCCACGTACCCGCAGGGACCACAGCCAGGAG
CTCGTGGCGGCGGCGGCGGTGGTGCTGGTGGTGCCGGCGGGTACAAGTAC
GCAAGCTTTCTAGACC

BO06514.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6305-PA 537 CG6305-RA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr50Cb-RA 867 CG6305-RA 234..767 17..550 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13804838..13805131 257..550 1470 100 Plus
2R 25286936 2R 13803625..13803741 47..163 585 100 Plus
2R 25286936 2R 13804363..13804456 164..257 470 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:50:51 has no hits.

BO06514.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:46 Download gff for BO06514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6305-PA 1..537 17..551 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:16 Download gff for BO06514.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6305-PA 1..537 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:33 Download gff for BO06514.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 234..772 17..556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:23 Download gff for BO06514.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 234..772 17..556 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:23 Download gff for BO06514.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13795176..13795205 17..46 100 -> Plus
2R 13803625..13803741 47..163 100 -> Plus
2R 13804363..13804455 164..256 100 -> Plus
2R 13804838..13805136 257..556 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:33 Download gff for BO06514.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9682681..9682710 17..46 100 -> Plus
arm_2R 9691130..9691246 47..163 100 -> Plus
arm_2R 9691868..9691960 164..256 100 -> Plus
arm_2R 9692343..9692641 257..556 99   Plus

BO06514.complete Sequence

568 bp (568 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630430

> BO06514.complete
GAAGTTATCAGTCGACATGATGTCCTTCAAGTCGTTCGTCCTGCTTAGCT
TATCCCTCGCTGCCATCAGTGCCTATGCCTACGCCCAGATCGCCCCTGGC
TCCAACGCGTACCTCCCGCCCACCAAGAATGGCTACGACTACTCGGAACC
CAAGACCCCATTCAAGCCCGGCCCACCTGGAAGACCAGCGGCACCTGGAC
CCCGGCCACCCGCACCTCCTGGCACTCCCCGCAACATACCTGGCCAGCCA
GGCGATGACCATGTCCACGTGCCCGGCATGCCGTACGACTTCGAGTACGC
CGTTCAGGATCCGGAGACCGCCAACGATTATGCGCACAAGGCGTCCAGTG
ATGGTGACGTGGTGACCGGCGAGTACCGCGTCCAGATGCCCGACGGAAGG
ACCCAGATCGTCCGCTACACCGCCGACTGGAAGACGGGCTACCACGCGGA
CGTGAGCTACGAGGGCGAGGCCACGTACCCGCAGGGACCACAGCCAGGAG
CTCGTGGCGGCGGCGGCGGTGGTGCTGGTGGTGCCGGCGGGTACAAGTAC
GCAAGCTTTCTAGACCAT

BO06514.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr50Cb-RA 537 CG6305-PA 1..534 17..550 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr50Cb-RA 867 CG6305-RA 234..767 17..550 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13804838..13805131 257..550 1470 100 Plus
2R 25286936 2R 13803625..13803741 47..163 585 100 Plus
2R 25286936 2R 13804363..13804456 164..257 470 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:13 has no hits.

BO06514.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:02 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 1..537 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:52 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 208..746 17..556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:52 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 234..767 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:02 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 208..746 17..556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:45 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr50Cb-RA 234..767 17..552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:45 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13795176..13795205 17..46 100 -> Plus
2R 13803625..13803741 47..163 100 -> Plus
2R 13804363..13804455 164..256 100 -> Plus
2R 13804838..13805131 257..552 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:52 Download gff for BO06514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9682681..9682710 17..46 100 -> Plus
arm_2R 9691130..9691246 47..163 100 -> Plus
arm_2R 9691868..9691960 164..256 100 -> Plus
arm_2R 9692343..9692636 257..552 99   Plus

BO06514.pep Sequence

Translation from 16 to 568

> BO06514.pep
MMSFKSFVLLSLSLAAISAYAYAQIAPGSNAYLPPTKNGYDYSEPKTPFK
PGPPGRPAAPGPRPPAPPGTPRNIPGQPGDDHVHVPGMPYDFEYAVQDPE
TANDYAHKASSDGDVVTGEYRVQMPDGRTQIVRYTADWKTGYHADVSYEG
EATYPQGPQPGARGGGGGGAGGAGGYKYASFLDH

BO06514.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr50Cb-PA 178 CG6305-PA 1..178 1..178 985 100 Plus
resilin-PA 620 CG15920-PA 272..428 26..176 209 35.4 Plus
Cpr56F-PA 217 CG9036-PA 2..203 5..175 202 30.8 Plus
Cpr76Bd-PD 1228 CG9299-PD 1108..1209 57..146 176 37.3 Plus
Cpr76Bd-PB 1228 CG9299-PB 1108..1209 57..146 176 37.3 Plus