Clone Sequence Records
BO06515.5prime Sequence
677 bp (676 high quality bases) assembled on 2005-12-03
> BO06515.5prime
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCGCAAGCTTTCTAGACC
BO06515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 50..696 | 15..661 | 3235 | 100 | Plus |
CG14704-PB | 648 | PGRP-LB-RB | 1..645 | 17..661 | 3225 | 100 | Plus |
CG14704-PA | 648 | PGRP-LB-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RF | 1234 | CG14704-RF | 427..1073 | 15..661 | 3235 | 100 | Plus |
PGRP-LB-RE | 925 | CG14704-RE | 118..764 | 15..661 | 3235 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 119..765 | 15..661 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453808 | 371..15 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 11453010..11453299 | 661..372 | 1450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:58:54 has no hits.
BO06515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:48 Download gff for
BO06515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 45..699 | 8..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:19 Download gff for
BO06515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 45..699 | 8..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:11 Download gff for
BO06515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 114..771 | 8..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:51 Download gff for
BO06515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 114..771 | 8..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:51 Download gff for
BO06515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 372..668 | 98 | <- | Minus |
3R | 11453452..11453813 | 8..371 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:11 Download gff for
BO06515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 372..668 | 98 | <- | Minus |
arm_3R | 7279174..7279535 | 8..371 | 99 | | Minus |
BO06515.3prime Sequence
677 bp (676 high quality bases) assembled on 2005-12-03
> BO06515.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGGCGCAGCTGGCGGGGATTGGTGCG
GCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGCC
GTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCCA
GCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGCA
CCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAAA
ACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCGG
CAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCAT
TGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTAA
ATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATCC
GCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAGT
CCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGACG
TAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCACC
CCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGAT
TCGCCTGCTGCATGTCGACTGATAACT
BO06515.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 50..696 | 665..19 | 3235 | 100 | Minus |
CG14704-PB | 648 | PGRP-LB-RB | 1..645 | 663..19 | 3225 | 100 | Minus |
CG14704-PA | 648 | PGRP-LB-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RF | 1234 | CG14704-RF | 427..1073 | 665..19 | 3235 | 100 | Minus |
PGRP-LB-RE | 925 | CG14704-RE | 118..764 | 665..19 | 3235 | 100 | Minus |
PGRP-LB-RD | 926 | CG14704-RD | 119..765 | 665..19 | 3235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453808 | 309..665 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 11453010..11453299 | 19..308 | 1450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:12:30 has no hits.
BO06515.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:47 Download gff for
BO06515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 37..699 | 18..677 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:17 Download gff for
BO06515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 37..699 | 18..677 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:12 Download gff for
BO06515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 106..771 | 12..677 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:08 Download gff for
BO06515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 106..771 | 12..677 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:08 Download gff for
BO06515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 12..308 | 98 | <- | Plus |
3R | 11453452..11453815 | 309..677 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:12 Download gff for
BO06515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 12..308 | 98 | <- | Plus |
arm_3R | 7279174..7279537 | 309..677 | 98 | | Plus |
BO06515.complete Sequence
679 bp (679 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630431
> BO06515.complete
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCGCAAGCTTTCTAGACCAT
BO06515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RD | 768 | CG14704-PD | 119..765 | 15..661 | 3235 | 100 | Plus |
PGRP-LB-RC | 699 | CG14704-PC | 50..696 | 15..661 | 3235 | 100 | Plus |
PGRP-LB-RF | 648 | CG14704-PF | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RF | 1234 | CG14704-RF | 427..1073 | 15..661 | 3235 | 100 | Plus |
PGRP-LB-RE | 925 | CG14704-RE | 118..764 | 15..661 | 3235 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 119..765 | 15..661 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453808 | 371..15 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 11453010..11453299 | 661..372 | 1450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:14:45 has no hits.
BO06515.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:03 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 45..699 | 8..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:54 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RA | 317..974 | 8..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:50 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 121..765 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:04 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RA | 317..974 | 8..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:13 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RD | 121..765 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:13 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453008..11453299 | 372..663 | 99 | <- | Minus |
3R | 11453452..11453806 | 17..371 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:50 Download gff for
BO06515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278730..7279021 | 372..663 | 99 | <- | Minus |
arm_3R | 7279174..7279528 | 17..371 | 100 | | Minus |
BO06515.pep Sequence
Translation from 16 to 679
> BO06515.pep
MQQANLGDGVATARLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVC
YSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAH
APKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLL
GHRQVRDTECPGGRLFAEISSWPHFTHINDTEGVSSTTAPVVPHVHPQAA
APQKPHQSPPAAPKVASFLDH
BO06515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-PF | 215 | CG14704-PF | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PE | 215 | CG14704-PE | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PA | 215 | CG14704-PA | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PB | 215 | CG14704-PB | 1..215 | 1..215 | 1176 | 100 | Plus |
PGRP-LB-PC | 232 | CG14704-PC | 18..232 | 1..215 | 1176 | 100 | Plus |