Clone BO06515 Report

Search the DGRC for BO06515

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LB-RA
Protein status:BO06515.pep: validated not full length
Sequenced Size:679

Clone Sequence Records

BO06515.5prime Sequence

677 bp (676 high quality bases) assembled on 2005-12-03

> BO06515.5prime
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCGCAAGCTTTCTAGACC

BO06515.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 50..696 15..661 3235 100 Plus
CG14704-PB 648 PGRP-LB-RB 1..645 17..661 3225 100 Plus
CG14704-PA 648 PGRP-LB-RA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RF 1234 CG14704-RF 427..1073 15..661 3235 100 Plus
PGRP-LB-RE 925 CG14704-RE 118..764 15..661 3235 100 Plus
PGRP-LB-RD 926 CG14704-RD 119..765 15..661 3235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453808 371..15 1785 100 Minus
3R 32079331 3R 11453010..11453299 661..372 1450 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:58:54 has no hits.

BO06515.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:48 Download gff for BO06515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 45..699 8..662 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:19 Download gff for BO06515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 45..699 8..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:11 Download gff for BO06515.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 114..771 8..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:51 Download gff for BO06515.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 114..771 8..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:51 Download gff for BO06515.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 372..668 98 <- Minus
3R 11453452..11453813 8..371 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:11 Download gff for BO06515.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 372..668 98 <- Minus
arm_3R 7279174..7279535 8..371 99   Minus

BO06515.3prime Sequence

677 bp (676 high quality bases) assembled on 2005-12-03

> BO06515.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGGCGCAGCTGGCGGGGATTGGTGCG
GCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGCC
GTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCCA
GCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGCA
CCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAAA
ACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCGG
CAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCAT
TGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTAA
ATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATCC
GCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAGT
CCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGACG
TAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCACC
CCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGAT
TCGCCTGCTGCATGTCGACTGATAACT

BO06515.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 50..696 665..19 3235 100 Minus
CG14704-PB 648 PGRP-LB-RB 1..645 663..19 3225 100 Minus
CG14704-PA 648 PGRP-LB-RA 1..645 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RF 1234 CG14704-RF 427..1073 665..19 3235 100 Minus
PGRP-LB-RE 925 CG14704-RE 118..764 665..19 3235 100 Minus
PGRP-LB-RD 926 CG14704-RD 119..765 665..19 3235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453808 309..665 1785 100 Plus
3R 32079331 3R 11453010..11453299 19..308 1450 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:12:30 has no hits.

BO06515.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:51:47 Download gff for BO06515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 37..699 18..677 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:17 Download gff for BO06515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 37..699 18..677 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:53:12 Download gff for BO06515.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 106..771 12..677 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:08 Download gff for BO06515.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 106..771 12..677 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:08 Download gff for BO06515.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 12..308 98 <- Plus
3R 11453452..11453815 309..677 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:53:12 Download gff for BO06515.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 12..308 98 <- Plus
arm_3R 7279174..7279537 309..677 98   Plus

BO06515.complete Sequence

679 bp (679 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630431

> BO06515.complete
GAAGTTATCAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCA
CCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCC
GTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTA
CATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGG
ACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTAT
AGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAA
TGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTG
TGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGAT
GCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCC
TGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTG
GCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATA
AACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGT
CCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTG
CGCCCAAGGTCGCAAGCTTTCTAGACCAT

BO06515.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RD 768 CG14704-PD 119..765 15..661 3235 100 Plus
PGRP-LB-RC 699 CG14704-PC 50..696 15..661 3235 100 Plus
PGRP-LB-RF 648 CG14704-PF 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RF 1234 CG14704-RF 427..1073 15..661 3235 100 Plus
PGRP-LB-RE 925 CG14704-RE 118..764 15..661 3235 100 Plus
PGRP-LB-RD 926 CG14704-RD 119..765 15..661 3235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453808 371..15 1785 100 Minus
3R 32079331 3R 11453010..11453299 661..372 1450 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:14:45 has no hits.

BO06515.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:03 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 45..699 8..662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:54 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RA 317..974 8..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:50 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 121..765 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:04 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RA 317..974 8..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:13 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RD 121..765 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:13 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11453008..11453299 372..663 99 <- Minus
3R 11453452..11453806 17..371 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:50 Download gff for BO06515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278730..7279021 372..663 99 <- Minus
arm_3R 7279174..7279528 17..371 100   Minus

BO06515.pep Sequence

Translation from 16 to 679

> BO06515.pep
MQQANLGDGVATARLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVC
YSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIGGDGMIYTGRGFNVIGAH
APKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIAFGVFKGYIDPAYKLL
GHRQVRDTECPGGRLFAEISSWPHFTHINDTEGVSSTTAPVVPHVHPQAA
APQKPHQSPPAAPKVASFLDH

BO06515.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-PF 215 CG14704-PF 1..215 1..215 1176 100 Plus
PGRP-LB-PE 215 CG14704-PE 1..215 1..215 1176 100 Plus
PGRP-LB-PA 215 CG14704-PA 1..215 1..215 1176 100 Plus
PGRP-LB-PB 215 CG14704-PB 1..215 1..215 1176 100 Plus
PGRP-LB-PC 232 CG14704-PC 18..232 1..215 1176 100 Plus