Clone BO06521 Report

Search the DGRC for BO06521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG8960-RA
Protein status:BO06521.pep: validated full length
Sequenced Size:376

Clone Sequence Records

BO06521.5prime Sequence

374 bp (373 high quality bases) assembled on 2005-12-03

> BO06521.5prime
GAAGTTATCAGTCGACATGTTATTCCTAGCGCCGCGCAAACATCTGTTTG
CCACCAACCTGATCATCCTGCTGATGATCTACTTGATGCGCAAGTGCCTG
CAGCTCTTCTGCATCATCGAGAACCGCGCCGTTCATCCGGCCGAGGAAGA
GGAGAAGGAGGTCAAGTTGCCGGAAAGGGAGATCCTCCAGAAGCGCCGCG
GCGGCTTCACCATCATCCCAGCTGCCATGCACCAGAGCATGCACGGCTTC
GGCTACGGCGAGGGTCACTACCAGATCTTTGTGGAGAAGAAGGAGCGTAA
CCTCCCAACCAAATCGCGCCTTAACGCGGCCACTGCTGAAGTCAAGCTGA
ATCCCAATGCAAGCTTTCTAGACC

BO06521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-PA 345 CG8960-RA 1..342 17..358 1710 100 Plus
CG8960-PB 288 CG8960-RB 1..285 74..358 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-RB 659 CG8960-RB 110..451 17..358 1710 100 Plus
CG8960-RA 1016 CG8960-RA 467..808 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2197540..2197881 17..358 1710 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:12:41 has no hits.

BO06521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:01 Download gff for BO06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-PA 1..345 17..359 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:34 Download gff for BO06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-PA 1..345 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:27 Download gff for BO06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 463..813 9..366 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:05 Download gff for BO06521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 463..813 9..366 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:05 Download gff for BO06521.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2197536..2197886 9..366 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:27 Download gff for BO06521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2197536..2197886 9..366 97   Plus

BO06521.3prime Sequence

374 bp (373 high quality bases) assembled on 2005-12-03

> BO06521.3prime
ATGGTCTAGAAAGCTTGCATTGGGATTCAGCTTGACTTCAGCAGTGGCCG
CGTTAAGGCGCGATTTGGTTGGGAGGTTACGCTCCTTCTTCTCCACAAAG
ATCTGGTAGTGACCCTCGCCGTAGCCGAAGCCGTGCATGCTCTGGTGCAT
GGCAGCTGGGATGATGGTGAAGCCGCCGCGGCGCTTCTGGAGGATCTCCC
TTTCCGGCAACTTGACCTCCTTCTCCTCTTCCTCGGCCGGATGAACGGCG
CGGTTCTCGATGATGCAGAAGAGCTGCAGGCACTTGCGCATCAAGTAGAT
CATCAGCAGGATGATCAGGTTGGTGGCAAACAGATGTTTGCGCGGCGCTA
GGAATAACATGTCGACTGATAACT

BO06521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-PA 345 CG8960-RA 1..342 360..19 1710 100 Minus
CG8960-PB 288 CG8960-RB 1..285 303..19 1425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-RB 659 CG8960-RB 110..451 360..19 1710 100 Minus
CG8960-RA 1016 CG8960-RA 467..808 360..19 1710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2197540..2197881 360..19 1710 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:55:57 has no hits.

BO06521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:00 Download gff for BO06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-PA 1..345 18..360 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:33 Download gff for BO06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-PA 1..345 18..360 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:09 Download gff for BO06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 463..813 11..368 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:02 Download gff for BO06521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 463..813 11..368 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:02 Download gff for BO06521.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2197536..2197886 11..368 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:09 Download gff for BO06521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2197536..2197886 11..368 97   Minus

BO06521.complete Sequence

376 bp (376 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630432

> BO06521.complete
GAAGTTATCAGTCGACATGTTATTCCTAGCGCCGCGCAAACATCTGTTTG
CCACCAACCTGATCATCCTGCTGATGATCTACTTGATGCGCAAGTGCCTG
CAGCTCTTCTGCATCATCGAGAACCGCGCCGTTCATCCGGCCGAGGAAGA
GGAGAAGGAGGTCAAGTTGCCGGAAAGGGAGATCCTCCAGAAGCGCCGCG
GCGGCTTCACCATCATCCCAGCTGCCATGCACCAGAGCATGCACGGCTTC
GGCTACGGCGAGGGTCACTACCAGATCTTTGTGGAGAAGAAGGAGCGTAA
CCTCCCAACCAAATCGCGCCTTAACGCGGCCACTGCTGAAGTCAAGCTGA
ATCCCAATGCAAGCTTTCTAGACCAT

BO06521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-RA 345 CG8960-PA 1..342 17..358 1710 100 Plus
CG8960-RB 288 CG8960-PB 1..285 74..358 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-RB 659 CG8960-RB 110..451 17..358 1710 100 Plus
CG8960-RA 1016 CG8960-RA 467..808 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2197540..2197881 17..358 1710 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:07:10 has no hits.

BO06521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:13 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 1..345 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:24 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 463..813 9..366 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:22:16 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 472..808 22..360 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:13 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 463..813 9..366 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:12 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
CG8960-RA 472..808 22..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:12 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2197545..2197881 22..360 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:22:16 Download gff for BO06521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2197545..2197881 22..360 99   Plus

BO06521.pep Sequence

Translation from 16 to 376

> BO06521.pep
MLFLAPRKHLFATNLIILLMIYLMRKCLQLFCIIENRAVHPAEEEEKEVK
LPEREILQKRRGGFTIIPAAMHQSMHGFGYGEGHYQIFVEKKERNLPTKS
RLNAATAEVKLNPNASFLDH

BO06521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8960-PA 114 CG8960-PA 1..114 1..114 591 100 Plus
CG8960-PB 95 CG8960-PB 1..95 20..114 498 100 Plus