Clone Sequence Records
BO06521.5prime Sequence
374 bp (373 high quality bases) assembled on 2005-12-03
> BO06521.5prime
GAAGTTATCAGTCGACATGTTATTCCTAGCGCCGCGCAAACATCTGTTTG
CCACCAACCTGATCATCCTGCTGATGATCTACTTGATGCGCAAGTGCCTG
CAGCTCTTCTGCATCATCGAGAACCGCGCCGTTCATCCGGCCGAGGAAGA
GGAGAAGGAGGTCAAGTTGCCGGAAAGGGAGATCCTCCAGAAGCGCCGCG
GCGGCTTCACCATCATCCCAGCTGCCATGCACCAGAGCATGCACGGCTTC
GGCTACGGCGAGGGTCACTACCAGATCTTTGTGGAGAAGAAGGAGCGTAA
CCTCCCAACCAAATCGCGCCTTAACGCGGCCACTGCTGAAGTCAAGCTGA
ATCCCAATGCAAGCTTTCTAGACC
BO06521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-PA | 345 | CG8960-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
CG8960-PB | 288 | CG8960-RB | 1..285 | 74..358 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-RB | 659 | CG8960-RB | 110..451 | 17..358 | 1710 | 100 | Plus |
CG8960-RA | 1016 | CG8960-RA | 467..808 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2197540..2197881 | 17..358 | 1710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:12:41 has no hits.
BO06521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:01 Download gff for
BO06521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-PA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:34 Download gff for
BO06521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-PA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:27 Download gff for
BO06521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 463..813 | 9..366 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:05 Download gff for
BO06521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 463..813 | 9..366 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:05 Download gff for
BO06521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2197536..2197886 | 9..366 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:27 Download gff for
BO06521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2197536..2197886 | 9..366 | 97 | | Plus |
BO06521.3prime Sequence
374 bp (373 high quality bases) assembled on 2005-12-03
> BO06521.3prime
ATGGTCTAGAAAGCTTGCATTGGGATTCAGCTTGACTTCAGCAGTGGCCG
CGTTAAGGCGCGATTTGGTTGGGAGGTTACGCTCCTTCTTCTCCACAAAG
ATCTGGTAGTGACCCTCGCCGTAGCCGAAGCCGTGCATGCTCTGGTGCAT
GGCAGCTGGGATGATGGTGAAGCCGCCGCGGCGCTTCTGGAGGATCTCCC
TTTCCGGCAACTTGACCTCCTTCTCCTCTTCCTCGGCCGGATGAACGGCG
CGGTTCTCGATGATGCAGAAGAGCTGCAGGCACTTGCGCATCAAGTAGAT
CATCAGCAGGATGATCAGGTTGGTGGCAAACAGATGTTTGCGCGGCGCTA
GGAATAACATGTCGACTGATAACT
BO06521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-PA | 345 | CG8960-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
CG8960-PB | 288 | CG8960-RB | 1..285 | 303..19 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-RB | 659 | CG8960-RB | 110..451 | 360..19 | 1710 | 100 | Minus |
CG8960-RA | 1016 | CG8960-RA | 467..808 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2197540..2197881 | 360..19 | 1710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:55:57 has no hits.
BO06521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:00 Download gff for
BO06521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-PA | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:33 Download gff for
BO06521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-PA | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:09 Download gff for
BO06521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 463..813 | 11..368 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:02 Download gff for
BO06521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 463..813 | 11..368 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:02 Download gff for
BO06521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2197536..2197886 | 11..368 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:09 Download gff for
BO06521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2197536..2197886 | 11..368 | 97 | | Minus |
BO06521.complete Sequence
376 bp (376 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630432
> BO06521.complete
GAAGTTATCAGTCGACATGTTATTCCTAGCGCCGCGCAAACATCTGTTTG
CCACCAACCTGATCATCCTGCTGATGATCTACTTGATGCGCAAGTGCCTG
CAGCTCTTCTGCATCATCGAGAACCGCGCCGTTCATCCGGCCGAGGAAGA
GGAGAAGGAGGTCAAGTTGCCGGAAAGGGAGATCCTCCAGAAGCGCCGCG
GCGGCTTCACCATCATCCCAGCTGCCATGCACCAGAGCATGCACGGCTTC
GGCTACGGCGAGGGTCACTACCAGATCTTTGTGGAGAAGAAGGAGCGTAA
CCTCCCAACCAAATCGCGCCTTAACGCGGCCACTGCTGAAGTCAAGCTGA
ATCCCAATGCAAGCTTTCTAGACCAT
BO06521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-RA | 345 | CG8960-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
CG8960-RB | 288 | CG8960-PB | 1..285 | 74..358 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-RB | 659 | CG8960-RB | 110..451 | 17..358 | 1710 | 100 | Plus |
CG8960-RA | 1016 | CG8960-RA | 467..808 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2197540..2197881 | 17..358 | 1710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:07:10 has no hits.
BO06521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:13 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:24 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 463..813 | 9..366 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:22:16 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 472..808 | 22..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:13 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 463..813 | 9..366 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:12 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8960-RA | 472..808 | 22..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:12 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2197545..2197881 | 22..360 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:22:16 Download gff for
BO06521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2197545..2197881 | 22..360 | 99 | | Plus |
BO06521.pep Sequence
Translation from 16 to 376
> BO06521.pep
MLFLAPRKHLFATNLIILLMIYLMRKCLQLFCIIENRAVHPAEEEEKEVK
LPEREILQKRRGGFTIIPAAMHQSMHGFGYGEGHYQIFVEKKERNLPTKS
RLNAATAEVKLNPNASFLDH
BO06521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8960-PA | 114 | CG8960-PA | 1..114 | 1..114 | 591 | 100 | Plus |
CG8960-PB | 95 | CG8960-PB | 1..95 | 20..114 | 498 | 100 | Plus |