Clone BO06530 Report

Search the DGRC for BO06530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG3795-RA
Protein status:BO06530.pep: validated full length
Sequenced Size:949

Clone Sequence Records

BO06530.3prime Sequence

854 bp (843 high quality bases) assembled on 2005-12-03

> BO06530.3prime
ATGGTCTAGAAAGCTTGCGGATATCCCAGTGAGCAGGAGCAGCAGCAGCA
GAAACAGCGTCCACACGGACCGTGTGCCTAGGGGGCAGGAGTTCTCGGTG
ATCCAATCCCGGAAGTGGTAGACATCGGTGTAGATCCCAGCCGAATCAGG
CTCGCCGCAACCCATTCCGAAGGACACGATGCCCGTCACCATGTTGTCAC
AGATGAGGGGCCCGCCCGAGTCGCCCTGGCAGCTGTCCACATCGGAGTCG
TGCTTGTCATTGGCGCAGAGCATGCCAGCGTTGGACCAGCCCAGCAGCTT
CTCGCAGAAGGTGTCCGGCAGGATCTGCATATCGCCGTTGATGGCCTCAT
CTGGCAGTGGTCCGAACTGAATGACCGTGCCCCAGCCGACGATGGAGCAC
GGGGCCCCGGCCACCGGAACCTTGTTGTACAGAGGTATTTTGGCAACGGC
ATCACCCAGACTGAGATCCGCCTCCAACAGAATCAATCCTATGTCGTACT
TCTGCGACTTGCCCTTCTTGTACTTGGGATGCGGCAATAGCTCCTCGGCC
TCAATAATCTGTGTTGTACTGCTCTTGAGCAGCCTCCTTGGCGTCCCGGC
AACGACCATCAACTTCTTGGCCTTCAGCTTTCGCCGATTGCTGAACATGC
AATGGGCCGCCGTGAGAATGGCCCGCTCGCTGAAGATCGTTCCCGCGCAA
AAGTGGTTATCGCCGAAGAACTTCTTCGGCTTGCCCATGCGCAGCGAAAC
CGTGTACTTGACCAGGTCGTTGGTATCCGGTCGATAGCCACCAGTGACCA
GGAACTGAAAGTCCGATGGTCGGTCCTGCCTCTGACTGGGCGCCGAATGC
AGCT

BO06530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PA 918 CG3795-RA 80..915 854..19 4180 100 Minus
CG8279-PA 3396 Pde6-RA 9..35 25..51 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 1247 CG3795-RB 126..961 854..19 4180 100 Minus
CG3795-RA 1115 CG3795-RA 126..961 854..19 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1709092..1709442 19..369 1755 100 Plus
X 23542271 X 1709505..1709775 367..637 1355 100 Plus
X 23542271 X 1709841..1710057 638..854 1085 100 Plus
Blast to na_te.dros performed 2015-02-11 05:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2370 32..58 108 88.9 Plus

BO06530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:13 Download gff for BO06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 80..918 18..854 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:52 Download gff for BO06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 80..918 18..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:00 Download gff for BO06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 107..946 13..854 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:25 Download gff for BO06530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 126..965 13..854 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:25 Download gff for BO06530.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1709088..1709439 13..366 99 <- Plus
X 1709505..1709775 367..637 100 <- Plus
X 1709841..1710057 638..854 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:00 Download gff for BO06530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1603121..1603472 13..366 99 <- Plus
arm_X 1603538..1603808 367..637 100 <- Plus
arm_X 1603874..1604090 638..854 100   Plus

BO06530.5prime Sequence

842 bp (803 high quality bases) assembled on 2005-12-03

> BO06530.5prime
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGG

BO06530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PA 918 CG3795-RA 1..826 17..842 4130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 1247 CG3795-RB 47..872 17..842 4130 100 Plus
CG3795-RA 1115 CG3795-RA 47..872 17..842 4130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1709841..1710136 312..17 1480 100 Minus
X 23542271 X 1709505..1709775 583..313 1355 100 Minus
X 23542271 X 1709181..1709442 842..581 1310 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:13:57 has no hits.

BO06530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:14 Download gff for BO06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:53 Download gff for BO06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-PA 1..826 17..842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:35 Download gff for BO06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 25..853 14..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:18 Download gff for BO06530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 44..872 14..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:18 Download gff for BO06530.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1709181..1709439 584..842 100 <- Minus
X 1709505..1709775 313..583 100 <- Minus
X 1709841..1710139 14..312 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:35 Download gff for BO06530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1603214..1603472 584..842 100 <- Minus
arm_X 1603538..1603808 313..583 100 <- Minus
arm_X 1603874..1604172 14..312 99   Minus

BO06530.complete Sequence

949 bp (949 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630433

> BO06530.complete
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATC
ACCGAGAACTCCTGCCCCCTAGGCACACGGTCCGTGTGGACGCTGTTTCT
GCTGCTGCTGCTCCTGCTCACTGGGATATCCGCAAGCTTTCTAGACCAT

BO06530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 918 CG3795-PB 1..915 17..931 4575 100 Plus
CG3795-RA 918 CG3795-PA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RB 1247 CG3795-RB 47..961 17..931 4575 100 Plus
CG3795-RA 1115 CG3795-RA 47..961 17..931 4575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1709092..1709442 931..581 1755 100 Minus
X 23542271 X 1709841..1710136 312..17 1480 100 Minus
X 23542271 X 1709505..1709775 583..313 1355 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:56:25 has no hits.

BO06530.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:05 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:56 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 25..946 14..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:50 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 28..942 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:05 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 25..946 14..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:26 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 47..961 17..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:26 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
X 1709505..1709775 313..583 100 <- Minus
X 1709841..1710136 17..312 100   Minus
X 1709088..1709439 584..933 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:50 Download gff for BO06530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1603121..1603472 584..933 99 <- Minus
arm_X 1603538..1603808 313..583 100 <- Minus
arm_X 1603874..1604169 17..312 100   Minus

BO06530.pep Sequence

Translation from 16 to 949

> BO06530.pep
MCPSKFVVYILLISVSANSNSESQAGQLHSAPSQRQDRPSDFQFLVTGGY
RPDTNDLVKYTVSLRMGKPKKFFGDNHFCAGTIFSERAILTAAHCMFSNR
RKLKAKKLMVVAGTPRRLLKSSTTQIIEAEELLPHPKYKKGKSQKYDIGL
ILLEADLSLGDAVAKIPLYNKVPVAGAPCSIVGWGTVIQFGPLPDEAING
DMQILPDTFCEKLLGWSNAGMLCANDKHDSDVDSCQGDSGGPLICDNMVT
GIVSFGMGCGEPDSAGIYTDVYHFRDWITENSCPLGTRSVWTLFLLLLLL
LTGISASFLDH

BO06530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PB 305 CG3795-PB 1..305 1..305 1613 100 Plus
CG3795-PA 305 CG3795-PA 1..305 1..305 1613 100 Plus
CG18223-PA 322 CG18223-PA 57..280 57..278 364 36.7 Plus
CG14780-PA 302 CG14780-PA 42..302 56..309 346 33 Plus
CG13527-PA 290 CG13527-PA 36..288 53..301 336 31.5 Plus