Clone Sequence Records
BO06530.3prime Sequence
854 bp (843 high quality bases) assembled on 2005-12-03
> BO06530.3prime
ATGGTCTAGAAAGCTTGCGGATATCCCAGTGAGCAGGAGCAGCAGCAGCA
GAAACAGCGTCCACACGGACCGTGTGCCTAGGGGGCAGGAGTTCTCGGTG
ATCCAATCCCGGAAGTGGTAGACATCGGTGTAGATCCCAGCCGAATCAGG
CTCGCCGCAACCCATTCCGAAGGACACGATGCCCGTCACCATGTTGTCAC
AGATGAGGGGCCCGCCCGAGTCGCCCTGGCAGCTGTCCACATCGGAGTCG
TGCTTGTCATTGGCGCAGAGCATGCCAGCGTTGGACCAGCCCAGCAGCTT
CTCGCAGAAGGTGTCCGGCAGGATCTGCATATCGCCGTTGATGGCCTCAT
CTGGCAGTGGTCCGAACTGAATGACCGTGCCCCAGCCGACGATGGAGCAC
GGGGCCCCGGCCACCGGAACCTTGTTGTACAGAGGTATTTTGGCAACGGC
ATCACCCAGACTGAGATCCGCCTCCAACAGAATCAATCCTATGTCGTACT
TCTGCGACTTGCCCTTCTTGTACTTGGGATGCGGCAATAGCTCCTCGGCC
TCAATAATCTGTGTTGTACTGCTCTTGAGCAGCCTCCTTGGCGTCCCGGC
AACGACCATCAACTTCTTGGCCTTCAGCTTTCGCCGATTGCTGAACATGC
AATGGGCCGCCGTGAGAATGGCCCGCTCGCTGAAGATCGTTCCCGCGCAA
AAGTGGTTATCGCCGAAGAACTTCTTCGGCTTGCCCATGCGCAGCGAAAC
CGTGTACTTGACCAGGTCGTTGGTATCCGGTCGATAGCCACCAGTGACCA
GGAACTGAAAGTCCGATGGTCGGTCCTGCCTCTGACTGGGCGCCGAATGC
AGCT
BO06530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-PA | 918 | CG3795-RA | 80..915 | 854..19 | 4180 | 100 | Minus |
CG8279-PA | 3396 | Pde6-RA | 9..35 | 25..51 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 1247 | CG3795-RB | 126..961 | 854..19 | 4180 | 100 | Minus |
CG3795-RA | 1115 | CG3795-RA | 126..961 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1709092..1709442 | 19..369 | 1755 | 100 | Plus |
X | 23542271 | X | 1709505..1709775 | 367..637 | 1355 | 100 | Plus |
X | 23542271 | X | 1709841..1710057 | 638..854 | 1085 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 05:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2370 | 32..58 | 108 | 88.9 | Plus |
BO06530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:13 Download gff for
BO06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 80..918 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:52 Download gff for
BO06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 80..918 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:00 Download gff for
BO06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 107..946 | 13..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:25 Download gff for
BO06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 126..965 | 13..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:25 Download gff for
BO06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1709088..1709439 | 13..366 | 99 | <- | Plus |
X | 1709505..1709775 | 367..637 | 100 | <- | Plus |
X | 1709841..1710057 | 638..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:00 Download gff for
BO06530.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1603121..1603472 | 13..366 | 99 | <- | Plus |
arm_X | 1603538..1603808 | 367..637 | 100 | <- | Plus |
arm_X | 1603874..1604090 | 638..854 | 100 | | Plus |
BO06530.5prime Sequence
842 bp (803 high quality bases) assembled on 2005-12-03
> BO06530.5prime
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGG
BO06530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-PA | 918 | CG3795-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 1247 | CG3795-RB | 47..872 | 17..842 | 4130 | 100 | Plus |
CG3795-RA | 1115 | CG3795-RA | 47..872 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1709841..1710136 | 312..17 | 1480 | 100 | Minus |
X | 23542271 | X | 1709505..1709775 | 583..313 | 1355 | 100 | Minus |
X | 23542271 | X | 1709181..1709442 | 842..581 | 1310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:13:57 has no hits.
BO06530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:14 Download gff for
BO06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:53 Download gff for
BO06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:35 Download gff for
BO06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 25..853 | 14..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:18 Download gff for
BO06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 44..872 | 14..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:18 Download gff for
BO06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1709181..1709439 | 584..842 | 100 | <- | Minus |
X | 1709505..1709775 | 313..583 | 100 | <- | Minus |
X | 1709841..1710139 | 14..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:35 Download gff for
BO06530.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1603214..1603472 | 584..842 | 100 | <- | Minus |
arm_X | 1603538..1603808 | 313..583 | 100 | <- | Minus |
arm_X | 1603874..1604172 | 14..312 | 99 | | Minus |
BO06530.complete Sequence
949 bp (949 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630433
> BO06530.complete
GAAGTTATCAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGC
TGATTTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTG
CATTCGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCT
GGTCACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGG
TTTCGCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTT
TGCGCGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTG
CATGTTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTG
CCGGGACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAG
GCCGAGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAA
GTACGACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATG
CCGTTGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCG
TGCTCCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGA
TGAGGCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGA
AGCTGCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCAC
GACTCCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTG
TGACAACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGC
CTGATTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATC
ACCGAGAACTCCTGCCCCCTAGGCACACGGTCCGTGTGGACGCTGTTTCT
GCTGCTGCTGCTCCTGCTCACTGGGATATCCGCAAGCTTTCTAGACCAT
BO06530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 918 | CG3795-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG3795-RA | 918 | CG3795-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-RB | 1247 | CG3795-RB | 47..961 | 17..931 | 4575 | 100 | Plus |
CG3795-RA | 1115 | CG3795-RA | 47..961 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1709092..1709442 | 931..581 | 1755 | 100 | Minus |
X | 23542271 | X | 1709841..1710136 | 312..17 | 1480 | 100 | Minus |
X | 23542271 | X | 1709505..1709775 | 583..313 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:56:25 has no hits.
BO06530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:05 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 1..918 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:56 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 25..946 | 14..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:50 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 28..942 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:05 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 25..946 | 14..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:26 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3795-RA | 47..961 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:26 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1709505..1709775 | 313..583 | 100 | <- | Minus |
X | 1709841..1710136 | 17..312 | 100 | | Minus |
X | 1709088..1709439 | 584..933 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:50 Download gff for
BO06530.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1603121..1603472 | 584..933 | 99 | <- | Minus |
arm_X | 1603538..1603808 | 313..583 | 100 | <- | Minus |
arm_X | 1603874..1604169 | 17..312 | 100 | | Minus |
BO06530.pep Sequence
Translation from 16 to 949
> BO06530.pep
MCPSKFVVYILLISVSANSNSESQAGQLHSAPSQRQDRPSDFQFLVTGGY
RPDTNDLVKYTVSLRMGKPKKFFGDNHFCAGTIFSERAILTAAHCMFSNR
RKLKAKKLMVVAGTPRRLLKSSTTQIIEAEELLPHPKYKKGKSQKYDIGL
ILLEADLSLGDAVAKIPLYNKVPVAGAPCSIVGWGTVIQFGPLPDEAING
DMQILPDTFCEKLLGWSNAGMLCANDKHDSDVDSCQGDSGGPLICDNMVT
GIVSFGMGCGEPDSAGIYTDVYHFRDWITENSCPLGTRSVWTLFLLLLLL
LTGISASFLDH
BO06530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3795-PB | 305 | CG3795-PB | 1..305 | 1..305 | 1613 | 100 | Plus |
CG3795-PA | 305 | CG3795-PA | 1..305 | 1..305 | 1613 | 100 | Plus |
CG18223-PA | 322 | CG18223-PA | 57..280 | 57..278 | 364 | 36.7 | Plus |
CG14780-PA | 302 | CG14780-PA | 42..302 | 56..309 | 346 | 33 | Plus |
CG13527-PA | 290 | CG13527-PA | 36..288 | 53..301 | 336 | 31.5 | Plus |