Clone Sequence Records
BO06531.3prime Sequence
823 bp (727 high quality bases) assembled on 2005-12-03
> BO06531.3prime
ATGGTCTAGAAAGCTTGCCATCGTCTGTGTGTTCTCGATGACCTTCTCGT
TGTCGTAGATCTCCTTGGCGTAGCACAGATTGGGGTAGTCGTAGGCAGCT
CCATATCGGTTCTTGCAGCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGAC
AGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAGT
GGTTGTAAAAGTCCCGGGAGAAGCGCACGGCCGCACATCCCACATGGGTG
TTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCCTTGTTGGGAAG
CTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCAG
CAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTCT
GTCTCGGCTCCGCTGTACTGGAACAAGGCGTTGTTCTGGCCGGCGTAGGC
GAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTTA
CGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGCC
ATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACGTTGTT
GCGCAGCTCGTTGAAGAGATTGAGGATGAGTTTGTGATGCGGCTCGATCT
TCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTTG
TTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCGC
TGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGACACTTAATGG
CCATGTCGACTGATAACTTTCGT
BO06531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17210-PA | 789 | scpr-B-RA | 1..786 | 804..19 | 3930 | 100 | Minus |
CG5106-PA | 789 | scpr-C-RA | 1..786 | 804..19 | 3680 | 98.7 | Minus |
CG5207-PA | 795 | scpr-A-RA | 103..792 | 708..19 | 3125 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 898 | CG17210-RA | 13..798 | 804..19 | 3930 | 100 | Minus |
scpr-C-RB | 1109 | CG5106-RB | 17..802 | 804..19 | 3780 | 98.7 | Minus |
scpr-C-RA | 910 | CG5106-RA | 17..802 | 804..19 | 3780 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11240141..11240812 | 19..690 | 3360 | 100 | Plus |
3R | 32079331 | 3R | 11225703..11226374 | 690..19 | 3225 | 98.7 | Minus |
3R | 32079331 | 3R | 11241384..11242052 | 687..19 | 3180 | 98.4 | Minus |
3R | 32079331 | 3R | 11240866..11240979 | 691..804 | 570 | 100 | Plus |
3R | 32079331 | 3R | 11225536..11225649 | 804..691 | 555 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:14:05 has no hits.
BO06531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:15 Download gff for
BO06531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:54 Download gff for
BO06531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:38 Download gff for
BO06531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 19..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:34 Download gff for
BO06531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 19..804 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:34 Download gff for
BO06531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11225536..11225649 | 691..804 | 99 | -> | Minus |
3R | 11225703..11226381 | 15..690 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:38 Download gff for
BO06531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7051258..7051371 | 691..804 | 99 | -> | Minus |
arm_3R | 7051425..7052103 | 15..690 | 98 | -> | Minus |
BO06531.5prime Sequence
818 bp (750 high quality bases) assembled on 2005-12-03
> BO06531.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACC
BO06531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17210-PA | 789 | scpr-B-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
CG5106-PA | 789 | scpr-C-RA | 1..786 | 17..802 | 3680 | 98.7 | Plus |
CG5207-PA | 795 | scpr-A-RA | 103..792 | 113..802 | 3125 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 898 | CG17210-RA | 13..798 | 17..802 | 3930 | 100 | Plus |
scpr-C-RB | 1109 | CG5106-RB | 17..802 | 17..802 | 3780 | 98.7 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..802 | 17..802 | 3780 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11240141..11240812 | 802..131 | 3360 | 100 | Minus |
3R | 32079331 | 3R | 11225703..11226374 | 131..802 | 3225 | 98.7 | Plus |
3R | 32079331 | 3R | 11241384..11242052 | 134..802 | 3180 | 98.4 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 570 | 100 | Minus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:02:22 has no hits.
BO06531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:16 Download gff for
BO06531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:55 Download gff for
BO06531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17210-PA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:05 Download gff for
BO06531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:33 Download gff for
BO06531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:33 Download gff for
BO06531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11240866..11240979 | 17..130 | 100 | | Minus |
3R | 11240141..11240812 | 131..802 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:05 Download gff for
BO06531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7065863..7066534 | 131..802 | 100 | <- | Minus |
arm_3R | 7066588..7066701 | 17..130 | 100 | | Minus |
BO06531.complete Sequence
820 bp (820 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630434
> BO06531.complete
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACCAT
BO06531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 789 | CG17210-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
scpr-C-RB | 789 | CG5106-PB | 1..786 | 17..802 | 3780 | 98.7 | Plus |
scpr-C-RA | 789 | CG5106-PA | 1..786 | 17..802 | 3780 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-RA | 898 | CG17210-RA | 13..798 | 17..802 | 3930 | 100 | Plus |
scpr-C-RB | 1109 | CG5106-RB | 17..802 | 17..802 | 3780 | 98.7 | Plus |
scpr-C-RA | 910 | CG5106-RA | 17..802 | 17..802 | 3780 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11240141..11240812 | 802..131 | 3360 | 100 | Minus |
3R | 32079331 | 3R | 11225703..11226374 | 131..802 | 3225 | 98.7 | Plus |
3R | 32079331 | 3R | 11241384..11242052 | 134..802 | 3180 | 98.4 | Plus |
3R | 32079331 | 3R | 11240866..11240979 | 130..17 | 570 | 100 | Minus |
3R | 32079331 | 3R | 11225536..11225649 | 17..130 | 555 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:37 has no hits.
BO06531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:06 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 1..789 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:57 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:30 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:06 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:27 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
scpr-B-RA | 13..798 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:27 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11240139..11240812 | 131..804 | 99 | <- | Minus |
3R | 11240866..11240979 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:30 Download gff for
BO06531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7065861..7066534 | 131..804 | 99 | <- | Minus |
arm_3R | 7066588..7066701 | 17..130 | 100 | | Minus |
BO06531.pep Sequence
Translation from 16 to 820
> BO06531.pep
MAIKCLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNALFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTMASFLDH
BO06531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
scpr-B-PA | 262 | CG17210-PA | 1..262 | 1..262 | 1394 | 100 | Plus |
scpr-C-PB | 262 | CG5106-PB | 1..262 | 1..262 | 1381 | 99.2 | Plus |
scpr-C-PA | 262 | CG5106-PA | 1..262 | 1..262 | 1381 | 99.2 | Plus |
scpr-A-PA | 264 | CG5207-PA | 9..264 | 7..262 | 1324 | 95.7 | Plus |
Ag5r2-PA | 254 | CG9540-PA | 1..250 | 1..251 | 411 | 34.6 | Plus |