Clone BO06531 Report

Search the DGRC for BO06531

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptscpr-B-RA
Protein status:BO06531.pep: validated full length
Sequenced Size:820

Clone Sequence Records

BO06531.3prime Sequence

823 bp (727 high quality bases) assembled on 2005-12-03

> BO06531.3prime
ATGGTCTAGAAAGCTTGCCATCGTCTGTGTGTTCTCGATGACCTTCTCGT
TGTCGTAGATCTCCTTGGCGTAGCACAGATTGGGGTAGTCGTAGGCAGCT
CCATATCGGTTCTTGCAGCCGGTGGTTGCCTTCTCTCCCGGAGTGTAGAC
AGGCTGACCCACAATGTTCGATGTGGCGAAGTTGCAGGTGAGTACGAAGT
GGTTGTAAAAGTCCCGGGAGAAGCGCACGGCCGCACATCCCACATGGGTG
TTCTTCTCGGCCACCGCGATGGTGAACTTGGTCACCGCCTTGTTGGGAAG
CTCCTCCGGGAAGCTGGCGAGGATCTCGGGAGATGCATTCGAGCGCTCAG
CAAACCAGTTCTCGATCTGCTCCTTTATTATTTCCGCATCGGTGTACTCT
GTCTCGGCTCCGCTGTACTGGAACAAGGCGTTGTTCTGGCCGGCGTAGGC
GAATCTCTCGGTGCTGCGACATTTATCTGGCAGGGACTCACAGGTCTTTA
CGTTCAGCAAGGCCAGATGGGAGAGCTCCTCGCACCAGGACATCTTGGCC
ATGCGAACAGCCTTGGGTAGTCCTTCTATTTTGCCTCCAGCCACGTTGTT
GCGCAGCTCGTTGAAGAGATTGAGGATGAGTTTGTGATGCGGCTCGATCT
TCACCTCACGCACGTCCTTGGGACAATTTTCACTGAAATTTCCCTTGTTG
TTGCAGGCTATGTGCTTGTCCAGGCACGTGGGCAGAGCACAATAGTCCGC
TGCAAGGCTTATTCCCAGCAGGGAAGTAAGCAAAATCAGACACTTAATGG
CCATGTCGACTGATAACTTTCGT

BO06531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17210-PA 789 scpr-B-RA 1..786 804..19 3930 100 Minus
CG5106-PA 789 scpr-C-RA 1..786 804..19 3680 98.7 Minus
CG5207-PA 795 scpr-A-RA 103..792 708..19 3125 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 898 CG17210-RA 13..798 804..19 3930 100 Minus
scpr-C-RB 1109 CG5106-RB 17..802 804..19 3780 98.7 Minus
scpr-C-RA 910 CG5106-RA 17..802 804..19 3780 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11240141..11240812 19..690 3360 100 Plus
3R 32079331 3R 11225703..11226374 690..19 3225 98.7 Minus
3R 32079331 3R 11241384..11242052 687..19 3180 98.4 Minus
3R 32079331 3R 11240866..11240979 691..804 570 100 Plus
3R 32079331 3R 11225536..11225649 804..691 555 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 06:14:05 has no hits.

BO06531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:15 Download gff for BO06531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 18..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:54 Download gff for BO06531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 18..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:38 Download gff for BO06531.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 19..804 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:34 Download gff for BO06531.3prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 19..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:34 Download gff for BO06531.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11225536..11225649 691..804 99 -> Minus
3R 11225703..11226381 15..690 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:38 Download gff for BO06531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7051258..7051371 691..804 99 -> Minus
arm_3R 7051425..7052103 15..690 98 -> Minus

BO06531.5prime Sequence

818 bp (750 high quality bases) assembled on 2005-12-03

> BO06531.5prime
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACC

BO06531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17210-PA 789 scpr-B-RA 1..786 17..802 3930 100 Plus
CG5106-PA 789 scpr-C-RA 1..786 17..802 3680 98.7 Plus
CG5207-PA 795 scpr-A-RA 103..792 113..802 3125 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 898 CG17210-RA 13..798 17..802 3930 100 Plus
scpr-C-RB 1109 CG5106-RB 17..802 17..802 3780 98.7 Plus
scpr-C-RA 910 CG5106-RA 17..802 17..802 3780 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11240141..11240812 802..131 3360 100 Minus
3R 32079331 3R 11225703..11226374 131..802 3225 98.7 Plus
3R 32079331 3R 11241384..11242052 134..802 3180 98.4 Plus
3R 32079331 3R 11240866..11240979 130..17 570 100 Minus
3R 32079331 3R 11225536..11225649 17..130 555 99.1 Plus
Blast to na_te.dros performed on 2015-02-13 16:02:22 has no hits.

BO06531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:16 Download gff for BO06531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:25:55 Download gff for BO06531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17210-PA 1..789 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:05 Download gff for BO06531.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:41:33 Download gff for BO06531.5prime
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 17..802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:41:33 Download gff for BO06531.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11240866..11240979 17..130 100   Minus
3R 11240141..11240812 131..802 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:05 Download gff for BO06531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7065863..7066534 131..802 100 <- Minus
arm_3R 7066588..7066701 17..130 100   Minus

BO06531.complete Sequence

820 bp (820 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630434

> BO06531.complete
GAAGTTATCAGTCGACATGGCCATTAAGTGTCTGATTTTGCTTACTTCCC
TGCTGGGAATAAGCCTTGCAGCGGACTATTGTGCTCTGCCCACGTGCCTG
GACAAGCACATAGCCTGCAACAACAAGGGAAATTTCAGTGAAAATTGTCC
CAAGGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCATCCTCA
ATCTCTTCAACGAGCTGCGCAACAACGTGGCTGGAGGCAAAATAGAAGGA
CTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGAGCTCTC
CCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAGATAAAT
GTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCCTTGTTC
CAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAATAAAGGA
GCAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCGAGATCC
TCGCCAGCTTCCCGGAGGAGCTTCCCAACAAGGCGGTGACCAAGTTCACC
ATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCGGCCGTGCGCTT
CTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCGCCACAT
CGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCAACCACC
GGCTGCAAGAACCGATATGGAGCTGCCTACGACTACCCCAATCTGTGCTA
CGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACACAGACGA
TGGCAAGCTTTCTAGACCAT

BO06531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 789 CG17210-PA 1..786 17..802 3930 100 Plus
scpr-C-RB 789 CG5106-PB 1..786 17..802 3780 98.7 Plus
scpr-C-RA 789 CG5106-PA 1..786 17..802 3780 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-RA 898 CG17210-RA 13..798 17..802 3930 100 Plus
scpr-C-RB 1109 CG5106-RB 17..802 17..802 3780 98.7 Plus
scpr-C-RA 910 CG5106-RA 17..802 17..802 3780 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11240141..11240812 802..131 3360 100 Minus
3R 32079331 3R 11225703..11226374 131..802 3225 98.7 Plus
3R 32079331 3R 11241384..11242052 134..802 3180 98.4 Plus
3R 32079331 3R 11240866..11240979 130..17 570 100 Minus
3R 32079331 3R 11225536..11225649 17..130 555 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 16:43:37 has no hits.

BO06531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:06 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 1..789 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:57 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:30 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 17..804 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:06 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 17..802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:27 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
scpr-B-RA 13..798 17..804 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:27 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11240139..11240812 131..804 99 <- Minus
3R 11240866..11240979 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:30 Download gff for BO06531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7065861..7066534 131..804 99 <- Minus
arm_3R 7066588..7066701 17..130 100   Minus

BO06531.pep Sequence

Translation from 16 to 820

> BO06531.pep
MAIKCLILLTSLLGISLAADYCALPTCLDKHIACNNKGNFSENCPKDVRE
VKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLALL
NVKTCESLPDKCRSTERFAYAGQNNALFQYSGAETEYTDAEIIKEQIENW
FAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRDFY
NHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKEIY
DNEKVIENTQTMASFLDH

BO06531.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
scpr-B-PA 262 CG17210-PA 1..262 1..262 1394 100 Plus
scpr-C-PB 262 CG5106-PB 1..262 1..262 1381 99.2 Plus
scpr-C-PA 262 CG5106-PA 1..262 1..262 1381 99.2 Plus
scpr-A-PA 264 CG5207-PA 9..264 7..262 1324 95.7 Plus
Ag5r2-PA 254 CG9540-PA 1..250 1..251 411 34.6 Plus