Clone BO06535 Report

Search the DGRC for BO06535

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG17012-RA
Protein status:BO06535.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO06535.3prime Sequence

797 bp (731 high quality bases) assembled on 2005-12-03

> BO06535.3prime
ATGGTCTAGAAAGCTTGCCACATTTGTAGCGGGTGCTTGAAAATGCAATA
CATCGATGGCACTAAGGATCCAGTTACGATAACGCGCCACACTAGCGTAC
AGAGAAGATCCCAAGCAAACAATGTTTCCCGTTCTCGATGTGATCCCCAC
TAGCTGGCCGTTGAAGACCAAGGGTCCACCGGAATCTCCATAACAGCCGC
CTTTTCCCATTCTTCCCGCGCAGATGTCCTCATTGAACACACCGTTGCCA
TATTTCAATTTACACACGATCAGCGGCCGAATAAGGATTTCAACTCCCTG
AAGTTGTCGTGGTCGAATTAAAAAATTTCCACGTCCCCAGCCAGTGGCTA
GCGCCGAAGACGACGTGGGAGGATCCGTCTCGGCCAAGGGAATTGTTTGT
ATGGAATCGGAAAAACTTAAAGGACTGCTCAGTTTGAGGACAGCCACGTC
GTTCTCCATGTTATGTTTATCAAATTGTGGGTGAATGATATATGCTTCCA
CTCCCACCACAACTCCTCCGCTATCATGCAGCGAGGATCCTGCTCGAATT
GAGCGTTCACCTTCTTTAATACAGTGGGCAGCTGTTATAATTATGGTTTT
ACTGTAGATGGATCCGCCGCAAAAATGTTCGCCGTAGTACTGTAAGGACA
CCTGCCACGGAACATCAGTGATGTCCATGCTGCTTCCGCCGATGATGCGT
TCAGATGGCTCCAAAAGGACAGGTACCACCGGAGAAATCAGCAAATGTAC
TGCCAAAAGCAAATGAAAGCACTTGGAAAACATGTCGACTGATAACT

BO06535.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17012-PA 768 CG17012-RA 1..765 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-RA 875 CG17012-RA 11..775 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2254276..2255040 19..783 3825 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:15:36 has no hits.

BO06535.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:23 Download gff for BO06535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17012-PA 1..768 15..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:04 Download gff for BO06535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17012-PA 1..768 15..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:05 Download gff for BO06535.3prime
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..781 10..791 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:12 Download gff for BO06535.3prime
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..781 10..791 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:12 Download gff for BO06535.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2254270..2255045 10..788 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:05 Download gff for BO06535.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2254270..2255045 10..788 99   Plus

BO06535.5prime Sequence

797 bp (786 high quality bases) assembled on 2005-12-03

> BO06535.5prime
GAAGTTATCAGTCGACATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAG
TACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAA
CGCATCATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGT
GTCCTTACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTA
AAACCATAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCA
ATTCGAGCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGT
GGAAGCATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACG
ACGTGGCTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATA
CAAACAATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCT
AGCCACTGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTC
AGGGAGTTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATAT
GGCAACGGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGG
CGGCTGTTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAG
TGGGGATCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTG
TACGCTAGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGT
ATTGCATTTTCAAGCACCCGCTACAAATGTGGCAAGCTTTCTAGACC

BO06535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17012-PA 768 CG17012-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-RA 875 CG17012-RA 11..775 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2254276..2255040 781..17 3825 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:15:49 has no hits.

BO06535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:23 Download gff for BO06535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17012-PA 1..768 17..785 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:06 Download gff for BO06535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17012-PA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:06 Download gff for BO06535.5prime
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..781 9..790 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:14 Download gff for BO06535.5prime
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..781 9..790 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:14 Download gff for BO06535.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2254270..2255045 12..790 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:06 Download gff for BO06535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2254270..2255045 12..790 99   Minus

BO06535.complete Sequence

799 bp (799 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630435

> BO06535.complete
GAAGTTATCAGTCGACATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAG
TACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAA
CGCATCATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGT
GTCCTTACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTA
AAACCATAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCA
ATTCGAGCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGT
GGAAGCATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACG
ACGTGGCTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATA
CAAACAATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCT
AGCCACTGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTC
AGGGAGTTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATAT
GGCAACGGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGG
CGGCTGTTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAG
TGGGGATCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTG
TACGCTAGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGT
ATTGCATTTTCAAGCACCCGCTACAAATGTGGCAAGCTTTCTAGACCAT

BO06535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-RA 768 CG17012-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-RA 875 CG17012-RA 11..775 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2254276..2255040 781..17 3825 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:51:38 has no hits.

BO06535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:07 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:59 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..781 9..790 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:55 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 18..775 24..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:07 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..781 9..790 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:19 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 18..775 24..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:19 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2254274..2255033 24..783 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:55 Download gff for BO06535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2254274..2255033 24..783 99   Minus

BO06535.pep Sequence

Translation from 16 to 799

> BO06535.pep
MFSKCFHLLLAVHLLISPVVPVLLEPSERIIGGSSMDITDVPWQVSLQYY
GEHFCGGSIYSKTIIITAAHCIKEGERSIRAGSSLHDSGGVVVGVEAYII
HPQFDKHNMENDVAVLKLSSPLSFSDSIQTIPLAETDPPTSSSALATGWG
RGNFLIRPRQLQGVEILIRPLIVCKLKYGNGVFNEDICAGRMGKGGCYGD
SGGPLVFNGQLVGITSRTGNIVCLGSSLYASVARYRNWILSAIDVLHFQA
PATNVASFLDH

BO06535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-PA 255 CG17012-PA 1..255 1..255 1332 100 Plus
Send2-PA 239 CG18125-PA 1..230 1..244 523 47.1 Plus
CG17234-PA 251 CG17234-PA 1..247 1..243 509 45.5 Plus
alphaTry-PA 256 CG18444-PA 7..251 8..241 440 44.7 Plus
betaTry-PB 253 CG18211-PB 7..251 8..241 430 43.1 Plus