Clone Sequence Records
BO06535.3prime Sequence
797 bp (731 high quality bases) assembled on 2005-12-03
> BO06535.3prime
ATGGTCTAGAAAGCTTGCCACATTTGTAGCGGGTGCTTGAAAATGCAATA
CATCGATGGCACTAAGGATCCAGTTACGATAACGCGCCACACTAGCGTAC
AGAGAAGATCCCAAGCAAACAATGTTTCCCGTTCTCGATGTGATCCCCAC
TAGCTGGCCGTTGAAGACCAAGGGTCCACCGGAATCTCCATAACAGCCGC
CTTTTCCCATTCTTCCCGCGCAGATGTCCTCATTGAACACACCGTTGCCA
TATTTCAATTTACACACGATCAGCGGCCGAATAAGGATTTCAACTCCCTG
AAGTTGTCGTGGTCGAATTAAAAAATTTCCACGTCCCCAGCCAGTGGCTA
GCGCCGAAGACGACGTGGGAGGATCCGTCTCGGCCAAGGGAATTGTTTGT
ATGGAATCGGAAAAACTTAAAGGACTGCTCAGTTTGAGGACAGCCACGTC
GTTCTCCATGTTATGTTTATCAAATTGTGGGTGAATGATATATGCTTCCA
CTCCCACCACAACTCCTCCGCTATCATGCAGCGAGGATCCTGCTCGAATT
GAGCGTTCACCTTCTTTAATACAGTGGGCAGCTGTTATAATTATGGTTTT
ACTGTAGATGGATCCGCCGCAAAAATGTTCGCCGTAGTACTGTAAGGACA
CCTGCCACGGAACATCAGTGATGTCCATGCTGCTTCCGCCGATGATGCGT
TCAGATGGCTCCAAAAGGACAGGTACCACCGGAGAAATCAGCAAATGTAC
TGCCAAAAGCAAATGAAAGCACTTGGAAAACATGTCGACTGATAACT
BO06535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17012-PA | 768 | CG17012-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:15:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Send1-RA | 875 | CG17012-RA | 11..775 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2254276..2255040 | 19..783 | 3825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:15:36 has no hits.
BO06535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:23 Download gff for
BO06535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-PA | 1..768 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:04 Download gff for
BO06535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-PA | 1..768 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:05 Download gff for
BO06535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Send1-RA | 1..781 | 10..791 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:12 Download gff for
BO06535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Send1-RA | 1..781 | 10..791 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:12 Download gff for
BO06535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2254270..2255045 | 10..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:05 Download gff for
BO06535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2254270..2255045 | 10..788 | 99 | | Plus |
BO06535.5prime Sequence
797 bp (786 high quality bases) assembled on 2005-12-03
> BO06535.5prime
GAAGTTATCAGTCGACATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAG
TACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAA
CGCATCATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGT
GTCCTTACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTA
AAACCATAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCA
ATTCGAGCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGT
GGAAGCATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACG
ACGTGGCTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATA
CAAACAATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCT
AGCCACTGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTC
AGGGAGTTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATAT
GGCAACGGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGG
CGGCTGTTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAG
TGGGGATCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTG
TACGCTAGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGT
ATTGCATTTTCAAGCACCCGCTACAAATGTGGCAAGCTTTCTAGACC
BO06535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17012-PA | 768 | CG17012-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Send1-RA | 875 | CG17012-RA | 11..775 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2254276..2255040 | 781..17 | 3825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:15:49 has no hits.
BO06535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:23 Download gff for
BO06535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-PA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:06 Download gff for
BO06535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-PA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:06 Download gff for
BO06535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Send1-RA | 1..781 | 9..790 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:14 Download gff for
BO06535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Send1-RA | 1..781 | 9..790 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:14 Download gff for
BO06535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2254270..2255045 | 12..790 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:06 Download gff for
BO06535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2254270..2255045 | 12..790 | 99 | | Minus |
BO06535.complete Sequence
799 bp (799 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630435
> BO06535.complete
GAAGTTATCAGTCGACATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAG
TACATTTGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAA
CGCATCATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGT
GTCCTTACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTA
AAACCATAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCA
ATTCGAGCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGT
GGAAGCATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACG
ACGTGGCTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATA
CAAACAATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCT
AGCCACTGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTC
AGGGAGTTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATAT
GGCAACGGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGG
CGGCTGTTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAG
TGGGGATCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTG
TACGCTAGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGT
ATTGCATTTTCAAGCACCCGCTACAAATGTGGCAAGCTTTCTAGACCAT
BO06535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Send1-RA | 768 | CG17012-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Send1-RA | 875 | CG17012-RA | 11..775 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2254276..2255040 | 781..17 | 3825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:38 has no hits.
BO06535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:07 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-RA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:59 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-RA | 1..781 | 9..790 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:55 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Send1-RA | 18..775 | 24..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:07 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17012-RA | 1..781 | 9..790 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:19 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Send1-RA | 18..775 | 24..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:19 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2254274..2255033 | 24..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:55 Download gff for
BO06535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2254274..2255033 | 24..783 | 99 | | Minus |
BO06535.pep Sequence
Translation from 16 to 799
> BO06535.pep
MFSKCFHLLLAVHLLISPVVPVLLEPSERIIGGSSMDITDVPWQVSLQYY
GEHFCGGSIYSKTIIITAAHCIKEGERSIRAGSSLHDSGGVVVGVEAYII
HPQFDKHNMENDVAVLKLSSPLSFSDSIQTIPLAETDPPTSSSALATGWG
RGNFLIRPRQLQGVEILIRPLIVCKLKYGNGVFNEDICAGRMGKGGCYGD
SGGPLVFNGQLVGITSRTGNIVCLGSSLYASVARYRNWILSAIDVLHFQA
PATNVASFLDH
BO06535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Send1-PA | 255 | CG17012-PA | 1..255 | 1..255 | 1332 | 100 | Plus |
Send2-PA | 239 | CG18125-PA | 1..230 | 1..244 | 523 | 47.1 | Plus |
CG17234-PA | 251 | CG17234-PA | 1..247 | 1..243 | 509 | 45.5 | Plus |
alphaTry-PA | 256 | CG18444-PA | 7..251 | 8..241 | 440 | 44.7 | Plus |
betaTry-PB | 253 | CG18211-PB | 7..251 | 8..241 | 430 | 43.1 | Plus |