Clone Sequence Records
BO06536.3prime Sequence
641 bp (640 high quality bases) assembled on 2005-12-03
> BO06536.3prime
ATGGTCTAGAAAGCTTGCTTCAGCCTGGCGGAGACGTGCCAGTCGCTGGG
TGAGCTCGTCTTGCTCTTGGGACACTGCTGTCGAGGCTCCAACGGATTGG
CTCTGAACTCCGCTGGGCAGCTCCATGTTGAGTTCGAGGCCAGCCTCGTC
GGCCACTTGCTGGAGCAGATTGTCGACATCTCCCTGAGGCACCGAGGTGG
TTACCGTGTCGGACATGGTGCCCTCCATTACCGAGCTCTGGACGTCCAGG
TCTTCGAACTGCGATTCAAACTTCTCCATCAGGGAGGAAATCTTCTCCAG
GTTCATACCCTTCATAGCTGCATCCATGGCCTTGACCACGCCGGCCATGG
AGCCGGTGACCTTGCGGGTGGTGAGTGCGGACTGAACCCTACTGGCCACT
GCATCCACTCGGGCACTCATCCTGAGGTAGTTAACCGCCTGGTTCTTCTG
GCGGATCGCATTCTCTGCGTGGATGCGGGCCACGTCCATGTTGCCCTTCT
GAATCGCCTTCTTGGCCTTTGCCTTCTCCAGCTTCTCCTCCTTCTCACAT
TTCTTTGAGTTTCGTTCCAATTCCTTTACGGCAAACTTTAGATTGAAAAG
GTGTTTTTCCATGGAACTCGTAGACATGTCGACTGATAACT
BO06536.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4108-PA | 612 | Chmp1-RA | 1..609 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 1096 | CG4108-RB | 157..769 | 631..19 | 3065 | 100 | Minus |
Chmp1-RA | 847 | CG4108-RA | 157..769 | 631..19 | 3065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18683222..18683808 | 19..605 | 2935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:59:33 has no hits.
BO06536.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:24 Download gff for
BO06536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-PA | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:07 Download gff for
BO06536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4108-PA | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:47 Download gff for
BO06536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..772 | 15..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:34:36 Download gff for
BO06536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..772 | 15..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:34:36 Download gff for
BO06536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18683218..18683808 | 15..605 | 99 | <- | Plus |
3L | 18683880..18683905 | 606..631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:47 Download gff for
BO06536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18676318..18676908 | 15..605 | 99 | <- | Plus |
arm_3L | 18676980..18677005 | 606..631 | 100 | | Plus |
BO06536.5prime Sequence
641 bp (640 high quality bases) assembled on 2005-12-03
> BO06536.5prime
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAAGCAAGCTTTCTAGACC
BO06536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4108-PA | 612 | Chmp1-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 1096 | CG4108-RB | 157..769 | 13..625 | 3065 | 100 | Plus |
Chmp1-RA | 847 | CG4108-RA | 157..769 | 13..625 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18683222..18683808 | 625..39 | 2935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:56:35 has no hits.
BO06536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:25 Download gff for
BO06536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:08 Download gff for
BO06536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4108-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:13 Download gff for
BO06536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..772 | 13..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:02 Download gff for
BO06536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 157..772 | 13..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:02 Download gff for
BO06536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18683218..18683808 | 39..629 | 99 | <- | Minus |
3L | 18683880..18683905 | 13..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:13 Download gff for
BO06536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18676318..18676908 | 39..629 | 99 | <- | Minus |
arm_3L | 18676980..18677005 | 13..38 | 100 | | Minus |
BO06536.complete Sequence
643 bp (643 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630436
> BO06536.complete
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAAGCAAGCTTTCTAGACCAT
BO06536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 612 | CG4108-PB | 1..609 | 17..625 | 3045 | 100 | Plus |
Chmp1-RA | 612 | CG4108-PA | 1..609 | 17..625 | 3045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-RB | 1096 | CG4108-RB | 157..769 | 13..625 | 3065 | 100 | Plus |
Chmp1-RA | 847 | CG4108-RA | 157..769 | 13..625 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18683222..18683808 | 625..39 | 2935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:35 has no hits.
BO06536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:35 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:02 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 155..770 | 13..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:48 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 161..769 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:38 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 155..770 | 13..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:12 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Chmp1-RA | 161..769 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:12 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18683220..18683808 | 39..627 | 99 | <- | Minus |
3L | 18683880..18683901 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:48 Download gff for
BO06536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18676320..18676908 | 39..627 | 99 | <- | Minus |
arm_3L | 18676980..18677001 | 17..38 | 100 | | Minus |
BO06536.pep Sequence
Translation from 16 to 643
> BO06536.pep
MSTSSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVA
RIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKA
MDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGD
VDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLARLR
QAEASFLDH
BO06536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Chmp1-PB | 203 | CG4108-PB | 1..203 | 1..203 | 982 | 100 | Plus |
Chmp1-PA | 203 | CG4108-PA | 1..203 | 1..203 | 982 | 100 | Plus |
Vps2-PA | 256 | CG14542-PA | 15..201 | 6..189 | 237 | 28.3 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 22..212 | 12..202 | 160 | 19.9 | Plus |