Clone BO06536 Report

Search the DGRC for BO06536

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptChmp1-RA
Protein status:BO06536.pep: validated full length
Sequenced Size:643

Clone Sequence Records

BO06536.3prime Sequence

641 bp (640 high quality bases) assembled on 2005-12-03

> BO06536.3prime
ATGGTCTAGAAAGCTTGCTTCAGCCTGGCGGAGACGTGCCAGTCGCTGGG
TGAGCTCGTCTTGCTCTTGGGACACTGCTGTCGAGGCTCCAACGGATTGG
CTCTGAACTCCGCTGGGCAGCTCCATGTTGAGTTCGAGGCCAGCCTCGTC
GGCCACTTGCTGGAGCAGATTGTCGACATCTCCCTGAGGCACCGAGGTGG
TTACCGTGTCGGACATGGTGCCCTCCATTACCGAGCTCTGGACGTCCAGG
TCTTCGAACTGCGATTCAAACTTCTCCATCAGGGAGGAAATCTTCTCCAG
GTTCATACCCTTCATAGCTGCATCCATGGCCTTGACCACGCCGGCCATGG
AGCCGGTGACCTTGCGGGTGGTGAGTGCGGACTGAACCCTACTGGCCACT
GCATCCACTCGGGCACTCATCCTGAGGTAGTTAACCGCCTGGTTCTTCTG
GCGGATCGCATTCTCTGCGTGGATGCGGGCCACGTCCATGTTGCCCTTCT
GAATCGCCTTCTTGGCCTTTGCCTTCTCCAGCTTCTCCTCCTTCTCACAT
TTCTTTGAGTTTCGTTCCAATTCCTTTACGGCAAACTTTAGATTGAAAAG
GTGTTTTTCCATGGAACTCGTAGACATGTCGACTGATAACT

BO06536.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4108-PA 612 Chmp1-RA 1..609 627..19 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 1096 CG4108-RB 157..769 631..19 3065 100 Minus
Chmp1-RA 847 CG4108-RA 157..769 631..19 3065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18683222..18683808 19..605 2935 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:59:33 has no hits.

BO06536.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:24 Download gff for BO06536.3prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-PA 1..612 15..627 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:07 Download gff for BO06536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4108-PA 1..612 15..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:47 Download gff for BO06536.3prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..772 15..631 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:34:36 Download gff for BO06536.3prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..772 15..631 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:34:36 Download gff for BO06536.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18683218..18683808 15..605 99 <- Plus
3L 18683880..18683905 606..631 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:47 Download gff for BO06536.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18676318..18676908 15..605 99 <- Plus
arm_3L 18676980..18677005 606..631 100   Plus

BO06536.5prime Sequence

641 bp (640 high quality bases) assembled on 2005-12-03

> BO06536.5prime
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAAGCAAGCTTTCTAGACC

BO06536.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4108-PA 612 Chmp1-RA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 1096 CG4108-RB 157..769 13..625 3065 100 Plus
Chmp1-RA 847 CG4108-RA 157..769 13..625 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18683222..18683808 625..39 2935 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:56:35 has no hits.

BO06536.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:25 Download gff for BO06536.5prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-PA 1..612 17..629 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:08 Download gff for BO06536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4108-PA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:13 Download gff for BO06536.5prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..772 13..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:02 Download gff for BO06536.5prime
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 157..772 13..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:02 Download gff for BO06536.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18683218..18683808 39..629 99 <- Minus
3L 18683880..18683905 13..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:13 Download gff for BO06536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18676318..18676908 39..629 99 <- Minus
arm_3L 18676980..18677005 13..38 100   Minus

BO06536.complete Sequence

643 bp (643 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630436

> BO06536.complete
GAAGTTATCAGTCGACATGTCTACGAGTTCCATGGAAAAACACCTTTTCA
ATCTAAAGTTTGCCGTAAAGGAATTGGAACGAAACTCAAAGAAATGTGAG
AAGGAGGAGAAGCTGGAGAAGGCAAAGGCCAAGAAGGCGATTCAGAAGGG
CAACATGGACGTGGCCCGCATCCACGCAGAGAATGCGATCCGCCAGAAGA
ACCAGGCGGTTAACTACCTCAGGATGAGTGCCCGAGTGGATGCAGTGGCC
AGTAGGGTTCAGTCCGCACTCACCACCCGCAAGGTCACCGGCTCCATGGC
CGGCGTGGTCAAGGCCATGGATGCAGCTATGAAGGGTATGAACCTGGAGA
AGATTTCCTCCCTGATGGAGAAGTTTGAATCGCAGTTCGAAGACCTGGAC
GTCCAGAGCTCGGTAATGGAGGGCACCATGTCCGACACGGTAACCACCTC
GGTGCCTCAGGGAGATGTCGACAATCTGCTCCAGCAAGTGGCCGACGAGG
CTGGCCTCGAACTCAACATGGAGCTGCCCAGCGGAGTTCAGAGCCAATCC
GTTGGAGCCTCGACAGCAGTGTCCCAAGAGCAAGACGAGCTCACCCAGCG
ACTGGCACGTCTCCGCCAGGCTGAAGCAAGCTTTCTAGACCAT

BO06536.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 612 CG4108-PB 1..609 17..625 3045 100 Plus
Chmp1-RA 612 CG4108-PA 1..609 17..625 3045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-RB 1096 CG4108-RB 157..769 13..625 3065 100 Plus
Chmp1-RA 847 CG4108-RA 157..769 13..625 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18683222..18683808 625..39 2935 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:39:35 has no hits.

BO06536.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:35 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:02 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 155..770 13..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:48 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 161..769 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:38 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 155..770 13..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:12 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
Chmp1-RA 161..769 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:12 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18683220..18683808 39..627 99 <- Minus
3L 18683880..18683901 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:48 Download gff for BO06536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18676320..18676908 39..627 99 <- Minus
arm_3L 18676980..18677001 17..38 100   Minus

BO06536.pep Sequence

Translation from 16 to 643

> BO06536.pep
MSTSSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVA
RIHAENAIRQKNQAVNYLRMSARVDAVASRVQSALTTRKVTGSMAGVVKA
MDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTVTTSVPQGD
VDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLARLR
QAEASFLDH

BO06536.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Chmp1-PB 203 CG4108-PB 1..203 1..203 982 100 Plus
Chmp1-PA 203 CG4108-PA 1..203 1..203 982 100 Plus
Vps2-PA 256 CG14542-PA 15..201 6..189 237 28.3 Plus
CHMP2B-PA 212 CG4618-PA 22..212 12..202 160 19.9 Plus