Clone Sequence Records
BO06539.3prime Sequence
893 bp (848 high quality bases) assembled on 2005-12-03
> BO06539.3prime
ATGGTCTAGAAAGCTTGCGATTTTGGGATCCTGGGGCGTAAGCTTGACAA
TCTTCACGGACTCCTCCCAGATCTTGAGACCCTTCTCCTCATCGAGGGCA
GCAGCATTAAGGGTGGCCTCCTTGCAGTCCATGAAGTACTTTCCAGACAC
ATTGGCCACCTCATTGGATGTGGCCAAATAGATAGTGGTCTGGGCGCCGG
CCTTGGTGGTCTTGAAGAATCCCTTGGTGATGGCCATCATGGGCAAGTTG
AGGGGGAAGGGAACGTTACGCCAAATGCCCGAGTCGATCATGCCGGGATG
CAGGAAATTCACTGTAACCTTGGTGCCCTCCAGCCGCTTGGCCAGCTCCC
GGGCAAAGTAGATGTTCGCAAACTTGGACACATAGTATAAGTAGGCAGCC
GGGAAAGTGCCGATGGGATTGAGCTTGGCCAGGTTAACCGACGACAGGCG
GTACAGCTCCGAGGCTACGATGACTATGCGAGCCGGCGCGCTCTTCTTTA
GTACATCGATGAGCAGATGCGTCAGCAGGAAGGGTCCATAGTGATTGGTG
GCCATGGTCAGCTCCACGCCATCCTCACTCGTCTGTCCGCGGAAGGCCAG
AGCCATGCCGGCATTGTGGATAAGCACATCGATCTTGGGCTCGGTCTTCA
CAATGTCAGCGGCGAACTCACGGACGGACTTCTGGGAGCCCAGATCCAGT
TTCTTGACTAGGATCTTGTTGTTCTTCGTCTCCTTGACGATCTCATCCTT
CACTGCATTGGCAGTCTCCAGGTTCCTGCAGGCCATGATGATGCGGGCTC
CACGTCCAGCCAGATCCTTGGCCGTCTCCTTTGCCATTCCGCTGTTGGCG
GCTGTGATAATGACTGTCTTGCCCTCCATGTCGACTGATAACT
BO06539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-PA | 864 | CG7675-RA | 49..861 | 831..19 | 4065 | 100 | Minus |
CG7675-PB | 1011 | CG7675-RB | 196..1008 | 831..19 | 4065 | 100 | Minus |
CG7675-PC | 864 | CG7675-RC | 49..861 | 831..19 | 4065 | 100 | Minus |
CG7675-PA | 864 | CG7675-RA | 1..44 | 879..836 | 195 | 97.7 | Minus |
CG7675-PB | 1011 | CG7675-RB | 148..191 | 879..836 | 195 | 97.7 | Minus |
CG7675-PC | 864 | CG7675-RC | 1..44 | 879..836 | 195 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-RE | 1101 | CG7675-RE | 125..985 | 879..19 | 4245 | 99.7 | Minus |
CG7675-RD | 1224 | CG7675-RD | 248..1108 | 879..19 | 4245 | 99.7 | Minus |
CG7675-RC | 1082 | CG7675-RC | 106..966 | 879..19 | 4245 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18378240..18378968 | 19..747 | 3645 | 100 | Plus |
3R | 32079331 | 3R | 18379226..18379358 | 747..879 | 605 | 97 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:14:13 has no hits.
BO06539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:29 Download gff for
BO06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-PC | 1..864 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:12 Download gff for
BO06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-PC | 1..864 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:39 Download gff for
BO06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RA | 142..1011 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:45 Download gff for
BO06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RC | 97..966 | 19..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:45 Download gff for
BO06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18379226..18379367 | 747..887 | 95 | | Plus |
3R | 18378240..18378967 | 19..746 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:39 Download gff for
BO06539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14203962..14204689 | 19..746 | 100 | <- | Plus |
arm_3R | 14204948..14205089 | 747..887 | 95 | | Plus |
BO06539.5prime Sequence
893 bp (794 high quality bases) assembled on 2005-12-03
> BO06539.5prime
GAAGTTATCAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCA
ACAGCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCC
CGCATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGA
TGAGATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGG
ATCTGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAG
ACCGAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGC
CTTCCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCA
ATCACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAG
AAGAGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCT
GTCGTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTG
CCTACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAG
CTGGCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCC
CGGCATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACT
TGCCCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGC
GCCCAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTC
TGGAAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGTCC
TCGATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTC
AAGCTTACGCCCCANGATCCCAAAATCGCAAGCTTTCTAGACC
BO06539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-PA | 864 | CG7675-RA | 1..861 | 17..877 | 4261 | 99.7 | Plus |
CG7675-PB | 1011 | CG7675-RB | 148..1008 | 17..877 | 4261 | 99.7 | Plus |
CG7675-PC | 864 | CG7675-RC | 1..861 | 17..877 | 4261 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-RE | 1101 | CG7675-RE | 125..985 | 17..877 | 4279 | 99.8 | Plus |
CG7675-RD | 1224 | CG7675-RD | 248..1108 | 17..877 | 4279 | 99.8 | Plus |
CG7675-RC | 1082 | CG7675-RC | 106..966 | 17..877 | 4279 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18378240..18378968 | 877..149 | 3619 | 99.7 | Minus |
3R | 32079331 | 3R | 18379226..18379358 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:05:03 has no hits.
BO06539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:30 Download gff for
BO06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-PC | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:13 Download gff for
BO06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-PC | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:04 Download gff for
BO06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RA | 142..1011 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:57 Download gff for
BO06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RC | 97..966 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:57 Download gff for
BO06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18378240..18378967 | 150..877 | 99 | <- | Minus |
3R | 18379226..18379367 | 9..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:04 Download gff for
BO06539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14203962..14204689 | 150..877 | 99 | <- | Minus |
arm_3R | 14204948..14205089 | 9..149 | 97 | | Minus |
BO06539.complete Sequence
895 bp (895 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630437
> BO06539.complete
GAAGTTATCAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCA
ACAGCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCC
CGCATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGA
TGAGATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGG
ATCTGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAG
ACCGAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGC
CTTCCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCA
ATCACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAG
AAGAGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCT
GTCGTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTG
CCTACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAG
CTGGCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCC
CGGCATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACT
TGCCCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGC
GCCCAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTC
TGGAAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCC
TCGATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTC
AAGCTTACGCCCCAGGATCCCAAAATCGCAAGCTTTCTAGACCAT
BO06539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-RE | 864 | CG7675-PE | 1..861 | 17..877 | 4305 | 100 | Plus |
CG7675-RD | 1011 | CG7675-PD | 148..1008 | 17..877 | 4305 | 100 | Plus |
CG7675-RC | 864 | CG7675-PC | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-RE | 1101 | CG7675-RE | 125..985 | 17..877 | 4305 | 100 | Plus |
CG7675-RD | 1224 | CG7675-RD | 248..1108 | 17..877 | 4305 | 100 | Plus |
CG7675-RC | 1082 | CG7675-RC | 106..966 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18378240..18378968 | 877..149 | 3645 | 100 | Minus |
3R | 32079331 | 3R | 18379226..18379358 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:51:21 has no hits.
BO06539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:09 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RC | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:01 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RC | 94..963 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:08 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RA | 151..1011 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:09 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RC | 94..963 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:33 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7675-RC | 106..966 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:33 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18378238..18378967 | 150..879 | 99 | <- | Minus |
3R | 18379226..18379358 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:08 Download gff for
BO06539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14203960..14204689 | 150..879 | 99 | <- | Minus |
arm_3R | 14204948..14205080 | 17..149 | 100 | | Minus |
BO06539.pep Sequence
Translation from 16 to 895
> BO06539.pep
MEGKTVIITGANSGIGKETAKDLAGRGARIIMACRNLETANAVKDEIVKE
TKNNKILVKKLDLGSQKSVREFAADIVKTEPKIDVLIHNAGMALAFRGQT
SEDGVELTMATNHYGPFLLTHLLIDVLKKSAPARIVIVASELYRLSSVNL
AKLNPIGTFPAAYLYYVSKFANIYFARELAKRLEGTKVTVNFLHPGMIDS
GIWRNVPFPLNLPMMAITKGFFKTTKAGAQTTIYLATSNEVANVSGKYFM
DCKEATLNAAALDEEKGLKIWEESVKIVKLTPQDPKIASFLDH
BO06539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7675-PE | 287 | CG7675-PE | 1..287 | 1..287 | 1448 | 100 | Plus |
CG7675-PC | 287 | CG7675-PC | 1..287 | 1..287 | 1448 | 100 | Plus |
CG7675-PA | 287 | CG7675-PA | 1..287 | 1..287 | 1448 | 100 | Plus |
CG7675-PD | 336 | CG7675-PD | 50..336 | 1..287 | 1448 | 100 | Plus |
CG7675-PB | 336 | CG7675-PB | 50..336 | 1..287 | 1448 | 100 | Plus |