Clone BO06539 Report

Search the DGRC for BO06539

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG7675-RA
Protein status:BO06539.pep: validated full length
Sequenced Size:895

Clone Sequence Records

BO06539.3prime Sequence

893 bp (848 high quality bases) assembled on 2005-12-03

> BO06539.3prime
ATGGTCTAGAAAGCTTGCGATTTTGGGATCCTGGGGCGTAAGCTTGACAA
TCTTCACGGACTCCTCCCAGATCTTGAGACCCTTCTCCTCATCGAGGGCA
GCAGCATTAAGGGTGGCCTCCTTGCAGTCCATGAAGTACTTTCCAGACAC
ATTGGCCACCTCATTGGATGTGGCCAAATAGATAGTGGTCTGGGCGCCGG
CCTTGGTGGTCTTGAAGAATCCCTTGGTGATGGCCATCATGGGCAAGTTG
AGGGGGAAGGGAACGTTACGCCAAATGCCCGAGTCGATCATGCCGGGATG
CAGGAAATTCACTGTAACCTTGGTGCCCTCCAGCCGCTTGGCCAGCTCCC
GGGCAAAGTAGATGTTCGCAAACTTGGACACATAGTATAAGTAGGCAGCC
GGGAAAGTGCCGATGGGATTGAGCTTGGCCAGGTTAACCGACGACAGGCG
GTACAGCTCCGAGGCTACGATGACTATGCGAGCCGGCGCGCTCTTCTTTA
GTACATCGATGAGCAGATGCGTCAGCAGGAAGGGTCCATAGTGATTGGTG
GCCATGGTCAGCTCCACGCCATCCTCACTCGTCTGTCCGCGGAAGGCCAG
AGCCATGCCGGCATTGTGGATAAGCACATCGATCTTGGGCTCGGTCTTCA
CAATGTCAGCGGCGAACTCACGGACGGACTTCTGGGAGCCCAGATCCAGT
TTCTTGACTAGGATCTTGTTGTTCTTCGTCTCCTTGACGATCTCATCCTT
CACTGCATTGGCAGTCTCCAGGTTCCTGCAGGCCATGATGATGCGGGCTC
CACGTCCAGCCAGATCCTTGGCCGTCTCCTTTGCCATTCCGCTGTTGGCG
GCTGTGATAATGACTGTCTTGCCCTCCATGTCGACTGATAACT

BO06539.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-PA 864 CG7675-RA 49..861 831..19 4065 100 Minus
CG7675-PB 1011 CG7675-RB 196..1008 831..19 4065 100 Minus
CG7675-PC 864 CG7675-RC 49..861 831..19 4065 100 Minus
CG7675-PA 864 CG7675-RA 1..44 879..836 195 97.7 Minus
CG7675-PB 1011 CG7675-RB 148..191 879..836 195 97.7 Minus
CG7675-PC 864 CG7675-RC 1..44 879..836 195 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-RE 1101 CG7675-RE 125..985 879..19 4245 99.7 Minus
CG7675-RD 1224 CG7675-RD 248..1108 879..19 4245 99.7 Minus
CG7675-RC 1082 CG7675-RC 106..966 879..19 4245 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18378240..18378968 19..747 3645 100 Plus
3R 32079331 3R 18379226..18379358 747..879 605 97 Plus
Blast to na_te.dros performed on 2015-02-13 06:14:13 has no hits.

BO06539.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:29 Download gff for BO06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-PC 1..864 18..879 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:12 Download gff for BO06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-PC 1..864 18..879 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:39 Download gff for BO06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-RA 142..1011 19..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:45 Download gff for BO06539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-RC 97..966 19..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:45 Download gff for BO06539.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18379226..18379367 747..887 95   Plus
3R 18378240..18378967 19..746 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:39 Download gff for BO06539.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14203962..14204689 19..746 100 <- Plus
arm_3R 14204948..14205089 747..887 95   Plus

BO06539.5prime Sequence

893 bp (794 high quality bases) assembled on 2005-12-03

> BO06539.5prime
GAAGTTATCAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCA
ACAGCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCC
CGCATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGA
TGAGATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGG
ATCTGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAG
ACCGAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGC
CTTCCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCA
ATCACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAG
AAGAGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCT
GTCGTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTG
CCTACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAG
CTGGCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCC
CGGCATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACT
TGCCCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGC
GCCCAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTC
TGGAAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGTCC
TCGATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTC
AAGCTTACGCCCCANGATCCCAAAATCGCAAGCTTTCTAGACC

BO06539.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-PA 864 CG7675-RA 1..861 17..877 4261 99.7 Plus
CG7675-PB 1011 CG7675-RB 148..1008 17..877 4261 99.7 Plus
CG7675-PC 864 CG7675-RC 1..861 17..877 4261 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-RE 1101 CG7675-RE 125..985 17..877 4279 99.8 Plus
CG7675-RD 1224 CG7675-RD 248..1108 17..877 4279 99.8 Plus
CG7675-RC 1082 CG7675-RC 106..966 17..877 4279 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18378240..18378968 877..149 3619 99.7 Minus
3R 32079331 3R 18379226..18379358 149..17 665 100 Minus
Blast to na_te.dros performed on 2015-02-11 05:05:03 has no hits.

BO06539.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:30 Download gff for BO06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-PC 1..864 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:13 Download gff for BO06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-PC 1..864 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:19:04 Download gff for BO06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-RA 142..1011 9..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:57 Download gff for BO06539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7675-RC 97..966 9..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:57 Download gff for BO06539.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18378240..18378967 150..877 99 <- Minus
3R 18379226..18379367 9..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:19:04 Download gff for BO06539.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14203962..14204689 150..877 99 <- Minus
arm_3R 14204948..14205089 9..149 97   Minus

BO06539.complete Sequence

895 bp (895 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630437

> BO06539.complete
GAAGTTATCAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCA
ACAGCGGAATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCC
CGCATCATCATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGA
TGAGATCGTCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGG
ATCTGGGCTCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAG
ACCGAGCCCAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGC
CTTCCGCGGACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCA
ATCACTATGGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAG
AAGAGCGCGCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCT
GTCGTCGGTTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTG
CCTACTTATACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAG
CTGGCCAAGCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCC
CGGCATGATCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACT
TGCCCATGATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGC
GCCCAGACCACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTC
TGGAAAGTACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTGCCC
TCGATGAGGAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTC
AAGCTTACGCCCCAGGATCCCAAAATCGCAAGCTTTCTAGACCAT

BO06539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-RE 864 CG7675-PE 1..861 17..877 4305 100 Plus
CG7675-RD 1011 CG7675-PD 148..1008 17..877 4305 100 Plus
CG7675-RC 864 CG7675-PC 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-RE 1101 CG7675-RE 125..985 17..877 4305 100 Plus
CG7675-RD 1224 CG7675-RD 248..1108 17..877 4305 100 Plus
CG7675-RC 1082 CG7675-RC 106..966 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18378240..18378968 877..149 3645 100 Minus
3R 32079331 3R 18379226..18379358 149..17 665 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:51:21 has no hits.

BO06539.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:23:09 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RC 1..864 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:47:01 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RC 94..963 9..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:08 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RA 151..1011 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:23:09 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RC 94..963 9..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:33 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
CG7675-RC 106..966 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:33 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18378238..18378967 150..879 99 <- Minus
3R 18379226..18379358 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:08 Download gff for BO06539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14203960..14204689 150..879 99 <- Minus
arm_3R 14204948..14205080 17..149 100   Minus

BO06539.pep Sequence

Translation from 16 to 895

> BO06539.pep
MEGKTVIITGANSGIGKETAKDLAGRGARIIMACRNLETANAVKDEIVKE
TKNNKILVKKLDLGSQKSVREFAADIVKTEPKIDVLIHNAGMALAFRGQT
SEDGVELTMATNHYGPFLLTHLLIDVLKKSAPARIVIVASELYRLSSVNL
AKLNPIGTFPAAYLYYVSKFANIYFARELAKRLEGTKVTVNFLHPGMIDS
GIWRNVPFPLNLPMMAITKGFFKTTKAGAQTTIYLATSNEVANVSGKYFM
DCKEATLNAAALDEEKGLKIWEESVKIVKLTPQDPKIASFLDH

BO06539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7675-PE 287 CG7675-PE 1..287 1..287 1448 100 Plus
CG7675-PC 287 CG7675-PC 1..287 1..287 1448 100 Plus
CG7675-PA 287 CG7675-PA 1..287 1..287 1448 100 Plus
CG7675-PD 336 CG7675-PD 50..336 1..287 1448 100 Plus
CG7675-PB 336 CG7675-PB 50..336 1..287 1448 100 Plus