Clone BO06540 Report

Search the DGRC for BO06540

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCorp-RA
Protein status:BO06540.pep: validated full length
Sequenced Size:673

Clone Sequence Records

BO06540.3prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-03

> BO06540.3prime
ATGGTCTAGAAAGCTTGCGATGCGAATCGAGCGCATGACAGGAACGGGAG
ACGGACCAACCGACGTGGACGCTGTGCGTCTTGGCTTCGAACAGACGTCC
ACGCGCTGGCGCTTCTTGGGCGGCTCCTTTTGGTCATCGTCCTCCTGCAG
CCGAGGTATGGAAATCTCATCCAGCTGCTGCTGCGACTGTTCCCTAAGGA
AACAGTTCTGACGATGCACAGGAATGGCGCCGGCAGTGGGCAGCGATCCC
AGGAAGCAATTCATCCGGTAGACCGGCACCGGCTTGTACTCCGGCACCGG
ATCTTCCTTTTCTTGGTCCTCCTCCTTCTGACCCTCGGCTTGCTCCAAAT
CCACTAGACGCTTTCGCTTAAGGGACTCGGTCTGGCCCAGACTGCGGCGC
ATCTTTGACCAGTCAAATCTCAGGTGAAAGGTGATCTCCGGGCAGGGGAA
CAAAAGCAGGAAATACTCCAGCAAATGCGCCTCAAACACGTAGTCCTTGC
CGTTGGTCAGGATGAGGGCTTTCCTTTGTGTCTCCGGAATGGCGAAGCGG
GTCATGGCTTGGGAGATGACCTCTTCGTAAGTGTTCGAGGATCCGCAAGT
GATGAGGTTGGTCTCGCCCTGGAAGAGAACCTTCAAGCTGCTCCTGATAT
CGGCCATGTCGACTGATAACT

BO06540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10965-PA 642 Corp-RA 1..639 657..19 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Corp-RB 1216 CG10965-RB 148..786 657..19 3195 100 Minus
Corp-RA 1084 CG10965-RA 148..786 657..19 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8270328..8270868 19..559 2705 100 Plus
X 23542271 X 8271163..8271262 558..657 500 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:14:29 has no hits.

BO06540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:31 Download gff for BO06540.3prime
Subject Subject Range Query Range Percent Splice Strand
Corp-PA 1..642 18..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:15 Download gff for BO06540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10965-PA 1..642 18..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:41 Download gff for BO06540.3prime
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 145..786 19..664 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:06 Download gff for BO06540.3prime
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 145..786 19..664 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:06 Download gff for BO06540.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8270328..8270866 19..557 100 <- Plus
X 8271163..8271265 558..664 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:41 Download gff for BO06540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8164361..8164899 19..557 100 <- Plus
arm_X 8165196..8165298 558..664 96   Plus

BO06540.5prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-03

> BO06540.5prime
GAAGTTATCAGTCGACATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCT
TCCAGGGCGAGACCAACCTCATCACTTGCGGATCCTCGAACACTTACGAA
GAGGTCATCTCCCAAGCCATGACCCGCTTCGCCATTCCGGAGACACAAAG
GAAAGCCCTCATCCTGACCAACGGCAAGGACTACGTGTTTGAGGCGCATT
TGCTGGAGTATTTCCTGCTTTTGTTCCCCTGCCCGGAGATCACCTTTCAC
CTGAGATTTGACTGGTCAAAGATGCGCCGCAGTCTGGGCCAGACCGAGTC
CCTTAAGCGAAAGCGTCTAGTGGATTTGGAGCAAGCCGAGGGTCAGAAGG
AGGAGGACCAAGAAAAGGAAGATCCGGTGCCGGAGTACAAGCCGGTGCCG
GTCTACCGGATGAATTGCTTCCTGGGATCGCTGCCCACTGCCGGCGCCAT
TCCTGTGCATCGTCAGAACTGTTTCCTTAGGGAACAGTCGCAGCAGCAGC
TGGATGAGATTTCCATACCTCGGCTGCAGGAGGACGATGACCAAAAGGAG
CCGCCCAAGAAGCGCCAGCGCGTGGACGTCTGTTCGAAGCCAAGACGCAC
AGCGTCCACGTCGGTTGGTCCGTCTCCCGTTCCTGTCATGCGCTCGATTC
GCATCGCAAGCTTTCTAGACC

BO06540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10965-PA 642 Corp-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Corp-RB 1216 CG10965-RB 148..786 17..655 3195 100 Plus
Corp-RA 1084 CG10965-RA 148..786 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8270328..8270868 655..115 2705 100 Minus
X 23542271 X 8271163..8271262 116..17 500 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:59:50 has no hits.

BO06540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:31 Download gff for BO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
Corp-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:16 Download gff for BO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10965-PA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:52 Download gff for BO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 145..786 10..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:36:54 Download gff for BO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 145..786 10..655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:36:54 Download gff for BO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8270328..8270866 117..655 100 <- Minus
X 8271163..8271265 10..116 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:52 Download gff for BO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8164361..8164899 117..655 100 <- Minus
arm_X 8165196..8165298 10..116 96   Minus

BO06540.complete Sequence

673 bp (673 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630438

> BO06540.complete
GAAGTTATCAGTCGACATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCT
TCCAGGGCGAGACCAACCTCATCACTTGCGGATCCTCGAACACTTACGAA
GAGGTCATCTCCCAAGCCATGACCCGCTTCGCCATTCCGGAGACACAAAG
GAAAGCCCTCATCCTGACCAACGGCAAGGACTACGTGTTTGAGGCGCATT
TGCTGGAGTATTTCCTGCTTTTGTTCCCCTGCCCGGAGATCACCTTTCAC
CTGAGATTTGACTGGTCAAAGATGCGCCGCAGTCTGGGCCAGACCGAGTC
CCTTAAGCGAAAGCGTCTAGTGGATTTGGAGCAAGCCGAGGGTCAGAAGG
AGGAGGACCAAGAAAAGGAAGATCCGGTGCCGGAGTACAAGCCGGTGCCG
GTCTACCGGATGAATTGCTTCCTGGGATCGCTGCCCACTGCCGGCGCCAT
TCCTGTGCATCGTCAGAACTGTTTCCTTAGGGAACAGTCGCAGCAGCAGC
TGGATGAGATTTCCATACCTCGGCTGCAGGAGGACGATGACCAAAAGGAG
CCGCCCAAGAAGCGCCAGCGCGTGGACGTCTGTTCGAAGCCAAGACGCAC
AGCGTCCACGTCGGTTGGTCCGTCTCCCGTTCCTGTCATGCGCTCGATTC
GCATCGCAAGCTTTCTAGACCAT

BO06540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Corp-RB 642 CG10965-PB 1..639 17..655 3195 100 Plus
Corp-RA 642 CG10965-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Corp-RB 1216 CG10965-RB 148..786 17..655 3195 100 Plus
Corp-RA 1084 CG10965-RA 148..786 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8270328..8270868 655..115 2705 100 Minus
X 23542271 X 8271163..8271262 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:21 has no hits.

BO06540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:11 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 1..642 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:22 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 140..781 10..655 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:16 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 148..786 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:11 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 140..781 10..655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:28 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
Corp-RA 148..786 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:28 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
X 8270326..8270866 117..657 99 <- Minus
X 8271163..8271262 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:16 Download gff for BO06540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8165196..8165295 17..116 100   Minus
arm_X 8164359..8164899 117..657 99 <- Minus

BO06540.pep Sequence

Translation from 16 to 673

> BO06540.pep
MADIRSSLKVLFQGETNLITCGSSNTYEEVISQAMTRFAIPETQRKALIL
TNGKDYVFEAHLLEYFLLLFPCPEITFHLRFDWSKMRRSLGQTESLKRKR
LVDLEQAEGQKEEDQEKEDPVPEYKPVPVYRMNCFLGSLPTAGAIPVHRQ
NCFLREQSQQQLDEISIPRLQEDDDQKEPPKKRQRVDVCSKPRRTASTSV
GPSPVPVMRSIRIASFLDH

BO06540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Corp-PB 213 CG10965-PB 1..213 1..213 1106 100 Plus
Corp-PA 213 CG10965-PA 1..213 1..213 1106 100 Plus