Clone Sequence Records
BO06540.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06540.3prime
ATGGTCTAGAAAGCTTGCGATGCGAATCGAGCGCATGACAGGAACGGGAG
ACGGACCAACCGACGTGGACGCTGTGCGTCTTGGCTTCGAACAGACGTCC
ACGCGCTGGCGCTTCTTGGGCGGCTCCTTTTGGTCATCGTCCTCCTGCAG
CCGAGGTATGGAAATCTCATCCAGCTGCTGCTGCGACTGTTCCCTAAGGA
AACAGTTCTGACGATGCACAGGAATGGCGCCGGCAGTGGGCAGCGATCCC
AGGAAGCAATTCATCCGGTAGACCGGCACCGGCTTGTACTCCGGCACCGG
ATCTTCCTTTTCTTGGTCCTCCTCCTTCTGACCCTCGGCTTGCTCCAAAT
CCACTAGACGCTTTCGCTTAAGGGACTCGGTCTGGCCCAGACTGCGGCGC
ATCTTTGACCAGTCAAATCTCAGGTGAAAGGTGATCTCCGGGCAGGGGAA
CAAAAGCAGGAAATACTCCAGCAAATGCGCCTCAAACACGTAGTCCTTGC
CGTTGGTCAGGATGAGGGCTTTCCTTTGTGTCTCCGGAATGGCGAAGCGG
GTCATGGCTTGGGAGATGACCTCTTCGTAAGTGTTCGAGGATCCGCAAGT
GATGAGGTTGGTCTCGCCCTGGAAGAGAACCTTCAAGCTGCTCCTGATAT
CGGCCATGTCGACTGATAACT
BO06540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10965-PA | 642 | Corp-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Corp-RB | 1216 | CG10965-RB | 148..786 | 657..19 | 3195 | 100 | Minus |
Corp-RA | 1084 | CG10965-RA | 148..786 | 657..19 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8270328..8270868 | 19..559 | 2705 | 100 | Plus |
X | 23542271 | X | 8271163..8271262 | 558..657 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:14:29 has no hits.
BO06540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:31 Download gff for
BO06540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:15 Download gff for
BO06540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10965-PA | 1..642 | 18..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:41 Download gff for
BO06540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 145..786 | 19..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:06 Download gff for
BO06540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 145..786 | 19..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:06 Download gff for
BO06540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8270328..8270866 | 19..557 | 100 | <- | Plus |
X | 8271163..8271265 | 558..664 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:41 Download gff for
BO06540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8164361..8164899 | 19..557 | 100 | <- | Plus |
arm_X | 8165196..8165298 | 558..664 | 96 | | Plus |
BO06540.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06540.5prime
GAAGTTATCAGTCGACATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCT
TCCAGGGCGAGACCAACCTCATCACTTGCGGATCCTCGAACACTTACGAA
GAGGTCATCTCCCAAGCCATGACCCGCTTCGCCATTCCGGAGACACAAAG
GAAAGCCCTCATCCTGACCAACGGCAAGGACTACGTGTTTGAGGCGCATT
TGCTGGAGTATTTCCTGCTTTTGTTCCCCTGCCCGGAGATCACCTTTCAC
CTGAGATTTGACTGGTCAAAGATGCGCCGCAGTCTGGGCCAGACCGAGTC
CCTTAAGCGAAAGCGTCTAGTGGATTTGGAGCAAGCCGAGGGTCAGAAGG
AGGAGGACCAAGAAAAGGAAGATCCGGTGCCGGAGTACAAGCCGGTGCCG
GTCTACCGGATGAATTGCTTCCTGGGATCGCTGCCCACTGCCGGCGCCAT
TCCTGTGCATCGTCAGAACTGTTTCCTTAGGGAACAGTCGCAGCAGCAGC
TGGATGAGATTTCCATACCTCGGCTGCAGGAGGACGATGACCAAAAGGAG
CCGCCCAAGAAGCGCCAGCGCGTGGACGTCTGTTCGAAGCCAAGACGCAC
AGCGTCCACGTCGGTTGGTCCGTCTCCCGTTCCTGTCATGCGCTCGATTC
GCATCGCAAGCTTTCTAGACC
BO06540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10965-PA | 642 | Corp-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Corp-RB | 1216 | CG10965-RB | 148..786 | 17..655 | 3195 | 100 | Plus |
Corp-RA | 1084 | CG10965-RA | 148..786 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8270328..8270868 | 655..115 | 2705 | 100 | Minus |
X | 23542271 | X | 8271163..8271262 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:59:50 has no hits.
BO06540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:31 Download gff for
BO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:16 Download gff for
BO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10965-PA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:52 Download gff for
BO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 145..786 | 10..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:36:54 Download gff for
BO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 145..786 | 10..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:36:54 Download gff for
BO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8270328..8270866 | 117..655 | 100 | <- | Minus |
X | 8271163..8271265 | 10..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:52 Download gff for
BO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8164361..8164899 | 117..655 | 100 | <- | Minus |
arm_X | 8165196..8165298 | 10..116 | 96 | | Minus |
BO06540.complete Sequence
673 bp (673 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630438
> BO06540.complete
GAAGTTATCAGTCGACATGGCCGATATCAGGAGCAGCTTGAAGGTTCTCT
TCCAGGGCGAGACCAACCTCATCACTTGCGGATCCTCGAACACTTACGAA
GAGGTCATCTCCCAAGCCATGACCCGCTTCGCCATTCCGGAGACACAAAG
GAAAGCCCTCATCCTGACCAACGGCAAGGACTACGTGTTTGAGGCGCATT
TGCTGGAGTATTTCCTGCTTTTGTTCCCCTGCCCGGAGATCACCTTTCAC
CTGAGATTTGACTGGTCAAAGATGCGCCGCAGTCTGGGCCAGACCGAGTC
CCTTAAGCGAAAGCGTCTAGTGGATTTGGAGCAAGCCGAGGGTCAGAAGG
AGGAGGACCAAGAAAAGGAAGATCCGGTGCCGGAGTACAAGCCGGTGCCG
GTCTACCGGATGAATTGCTTCCTGGGATCGCTGCCCACTGCCGGCGCCAT
TCCTGTGCATCGTCAGAACTGTTTCCTTAGGGAACAGTCGCAGCAGCAGC
TGGATGAGATTTCCATACCTCGGCTGCAGGAGGACGATGACCAAAAGGAG
CCGCCCAAGAAGCGCCAGCGCGTGGACGTCTGTTCGAAGCCAAGACGCAC
AGCGTCCACGTCGGTTGGTCCGTCTCCCGTTCCTGTCATGCGCTCGATTC
GCATCGCAAGCTTTCTAGACCAT
BO06540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Corp-RB | 642 | CG10965-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
Corp-RA | 642 | CG10965-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Corp-RB | 1216 | CG10965-RB | 148..786 | 17..655 | 3195 | 100 | Plus |
Corp-RA | 1084 | CG10965-RA | 148..786 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8270328..8270868 | 655..115 | 2705 | 100 | Minus |
X | 23542271 | X | 8271163..8271262 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:21 has no hits.
BO06540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:11 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 1..642 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:22 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 140..781 | 10..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:16 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 148..786 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:11 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 140..781 | 10..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:28 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Corp-RA | 148..786 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:28 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8270326..8270866 | 117..657 | 99 | <- | Minus |
X | 8271163..8271262 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:16 Download gff for
BO06540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8165196..8165295 | 17..116 | 100 | | Minus |
arm_X | 8164359..8164899 | 117..657 | 99 | <- | Minus |
BO06540.pep Sequence
Translation from 16 to 673
> BO06540.pep
MADIRSSLKVLFQGETNLITCGSSNTYEEVISQAMTRFAIPETQRKALIL
TNGKDYVFEAHLLEYFLLLFPCPEITFHLRFDWSKMRRSLGQTESLKRKR
LVDLEQAEGQKEEDQEKEDPVPEYKPVPVYRMNCFLGSLPTAGAIPVHRQ
NCFLREQSQQQLDEISIPRLQEDDDQKEPPKKRQRVDVCSKPRRTASTSV
GPSPVPVMRSIRIASFLDH
BO06540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Corp-PB | 213 | CG10965-PB | 1..213 | 1..213 | 1106 | 100 | Plus |
Corp-PA | 213 | CG10965-PA | 1..213 | 1..213 | 1106 | 100 | Plus |