Clone BO06541 Report

Search the DGRC for BO06541

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG15084-RA
Protein status:BO06541.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO06541.3prime Sequence

888 bp (673 high quality bases) assembled on 2005-12-03

> BO06541.3prime
ATGGTCTAGAAAGCTTGCGCCGTTGGAATCATTGTCTGAGGAGGAGTAAT
CCCCCACTAAGCTTATGGGTTTTTCGTTCGTGGCTGAAGATGTAGTTTCT
TCCAACTTTTTACGCCGTATGCCAAGATCCTGTACTTGGAGCTGGGTATT
CAGAACCTTTTGTCGCTTGAGTCCACCAAATGTGGTGACTGTTGCTCCGG
GAAGCGCTGGACGCATAAGCAGCTCCAACCGCTGCTCGGATTCCCGTTCC
AGAGCTGACTTCGTCTGCAACTTCATCAGGGCTGCCATTTCGCGATCTTG
TGTGGTCTCCGGAAGGAGAGCAATGTCCAAGCTGCTCTTGGCCAACAACT
GTCGATCCAGCTCCTGCTGACCATTGATCTCTTTCTTCTGCTGGCGAAAC
TCGGCGCGTAGGCGACTATTGGCCATATAGCTGTCATCCCAGACGCTCAT
GTTGCGCTCCACTAGTTTCTGGAGCACGGGCCTGGCATCTGCCCCTGCCT
TAGCATCCTTGGCTTGATGCTCCAACTTGTACATGGCATCGTCGAAGAGA
CGCTTTTGTACCTCCTTGGTTTCCGGTACAACTTGTTCGTTCTGCAAGGG
ATCCCAGCGGTTCTCCTGCCGTCTAGCCCCCGAAAGTATAACATAGTCCA
AATTGCCGGGATCCGTCTGGATCTCAAAGTGGTTGTCGCACAAGTGGCAC
TTCATCCGGAACTTAAAAACCGGCGTAGTGTAGTACATGCCCACCTTGGT
CTTCTCCGCATTGTAGCGCACGCCCATGCCGATGTGGTTCTTGCATCCAT
CACACCAGATATTGTAGGGCATCTCAAAGCGGATGATGATGATTTCCAGG
TGAATCTTGCGGGCCCGTTCCCGCAGGGCGTGGGTTCC

BO06541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-PA 951 CG15084-RA 79..948 888..19 4325 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-RA 1120 CG15084-RA 171..1040 888..19 4335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18851014..18851883 888..19 4335 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 10:56:50 has no hits.

BO06541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:33 Download gff for BO06541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-PA 79..951 16..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:18 Download gff for BO06541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-PA 79..951 16..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:16 Download gff for BO06541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 171..1040 19..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:51 Download gff for BO06541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 171..1040 19..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:51 Download gff for BO06541.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18851014..18851883 19..888 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:16 Download gff for BO06541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14738519..14739388 19..888 99   Minus

BO06541.5prime Sequence

786 bp (784 high quality bases) assembled on 2005-12-03

> BO06541.5prime
GAAGTTATCAGTCGACATGGGTGAACGCAAGGGACAGAACAAGTACTATC
CGCCCGACTATGATCCGAAGAAGGGCGGTCTCAACAAGTTCCAGGGAACC
CACGCCCTGCGGGAACGGGCCCGCAAGATTCACCTGGGAATCATCATCAT
CCGCTTTGAGATGCCCTACAATATCTGGTGTGATGGATGCAAGAACCACA
TCGGCATGGGCGTGCGCTACAATGCGGAGAAGACCAAGGTGGGCATGTAC
TACACTACGCCGGTTTTTAAGTTCCGGATGAAGTGCCACTTGTGCGACAA
CCACTTTGAGATCCAGACGGATCCCGGCAATTTGGACTATGTTATACTTT
CGGGGGCTAGACGGCAGGAGAACCGCTGGGATCCCTTGCAGAACGAACAA
GTTGTACCGGAAACCAAGGAGGTACAAAAGCGTCTCTTCGACGATGCCAT
GTACAAGTTGGAGCATCAAGCCAAGGATGCTAAGGCAGGGGCAGATGCCA
GGCCCGTGCTCCAGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGAC
AGCTATATGGCCAATAGTCGCCTACGCGCCGAGTTTCGCCAGCAGAAGAA
AGAGATCAATGGTCAGCAGGAGCTGGATCGACAGTTGTTGGCCAAGAGCA
GCTTGGACATTGCTCTCCTTCCGGAGACCACACAAGATCGCGAAATGGCA
GCCCTGATGAAGTTGCAGACGAAGTCAGCTCTGGAACGGGAATCCGAGCA
GCGGTTGGAGCTGCTTATGCGTCCAGCGCTTCCCGG

BO06541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-PA 951 CG15084-RA 1..770 17..786 3850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-RA 1120 CG15084-RA 93..862 17..786 3850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18850936..18851705 17..786 3850 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:02:19 has no hits.

BO06541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:34 Download gff for BO06541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-PA 1..770 17..786 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:19 Download gff for BO06541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-PA 1..770 17..786 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:23 Download gff for BO06541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 93..862 17..786 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:02 Download gff for BO06541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 93..862 17..786 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:02 Download gff for BO06541.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18850936..18851705 17..786 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:23 Download gff for BO06541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14738441..14739210 17..786 100   Plus

BO06541.complete Sequence

982 bp (982 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630439

> BO06541.complete
GAAGTTATCAGTCGACATGGGTGAACGCAAGGGACAGAACAAGTACTATC
CGCCCGACTATGATCCGAAGAAGGGCGGTCTCAACAAGTTCCAGGGAACC
CACGCCCTGCGGGAACGGGCCCGCAAGATTCACCTGGGAATCATCATCAT
CCGCTTTGAGATGCCCTACAATATCTGGTGTGATGGATGCAAGAACCACA
TCGGCATGGGCGTGCGCTACAATGCGGAGAAGACCAAGGTGGGCATGTAC
TACACTACGCCGGTTTTTAAGTTCCGGATGAAGTGCCACTTGTGCGACAA
CCACTTTGAGATCCAGACGGATCCCGGCAATTTGGACTATGTTATACTTT
CGGGGGCTAGACGGCAGGAGAACCGCTGGGATCCCTTGCAGAACGAACAA
GTTGTACCGGAAACCAAGGAGGTACAAAAGCGTCTCTTCGACGATGCCAT
GTACAAGTTGGAGCATCAAGCCAAGGATGCTAAGGCAGGGGCAGATGCCA
GGCCCGTGCTCCAGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGAC
AGCTATATGGCCAATAGTCGCCTACGCGCCGAGTTTCGCCAGCAGAAGAA
AGAGATCAATGGTCAGCAGGAGCTGGATCGACAGTTGTTGGCCAAGAGCA
GCTTGGACATTGCTCTCCTTCCGGAGACCACACAAGATCGCGAAATGGCA
GCCCTGATGAAGTTGCAGACGAAGTCAGCTCTGGAACGGGAATCCGAGCA
GCGGTTGGAGCTGCTTATGCGTCCAGCGCTTCCCGGAGCAACAGTCACCA
CATTTGGTGGACTCAAGCGACAAAAGGTTCTGAATACCCAGCTCCAAGTA
CAGGATCTTGGCATACGGCGTAAAAAGTTGGAAGAAACTACATCTTCAGC
CACGAACGAAAAACCCATAAGCTTAGTGGGGGATTACTCCTCCTCAGACA
ATGATTCCAACGGCGCAAGCTTTCTAGACCAT

BO06541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-RA 951 CG15084-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-RA 1120 CG15084-RA 93..1040 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18850936..18851883 17..964 4740 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:59:17 has no hits.

BO06541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:48 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 1..951 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:34 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 76..1023 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:08 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 93..1040 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:48 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 76..1023 17..964 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:46 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
CG15084-RA 93..1040 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:46 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18850936..18851883 17..966 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:08 Download gff for BO06541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14738441..14739388 17..966 99   Plus

BO06541.pep Sequence

Translation from 16 to 982

> BO06541.pep
MGERKGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMP
YNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQ
TDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEH
QAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQ
QELDRQLLAKSSLDIALLPETTQDREMAALMKLQTKSALERESEQRLELL
MRPALPGATVTTFGGLKRQKVLNTQLQVQDLGIRRKKLEETTSSATNEKP
ISLVGDYSSSDNDSNGASFLDH

BO06541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15084-PA 316 CG15084-PA 1..316 1..316 1651 100 Plus
CG8435-PA 333 CG8435-PA 1..195 1..204 185 26.9 Plus