Clone Sequence Records
BO06541.3prime Sequence
888 bp (673 high quality bases) assembled on 2005-12-03
> BO06541.3prime
ATGGTCTAGAAAGCTTGCGCCGTTGGAATCATTGTCTGAGGAGGAGTAAT
CCCCCACTAAGCTTATGGGTTTTTCGTTCGTGGCTGAAGATGTAGTTTCT
TCCAACTTTTTACGCCGTATGCCAAGATCCTGTACTTGGAGCTGGGTATT
CAGAACCTTTTGTCGCTTGAGTCCACCAAATGTGGTGACTGTTGCTCCGG
GAAGCGCTGGACGCATAAGCAGCTCCAACCGCTGCTCGGATTCCCGTTCC
AGAGCTGACTTCGTCTGCAACTTCATCAGGGCTGCCATTTCGCGATCTTG
TGTGGTCTCCGGAAGGAGAGCAATGTCCAAGCTGCTCTTGGCCAACAACT
GTCGATCCAGCTCCTGCTGACCATTGATCTCTTTCTTCTGCTGGCGAAAC
TCGGCGCGTAGGCGACTATTGGCCATATAGCTGTCATCCCAGACGCTCAT
GTTGCGCTCCACTAGTTTCTGGAGCACGGGCCTGGCATCTGCCCCTGCCT
TAGCATCCTTGGCTTGATGCTCCAACTTGTACATGGCATCGTCGAAGAGA
CGCTTTTGTACCTCCTTGGTTTCCGGTACAACTTGTTCGTTCTGCAAGGG
ATCCCAGCGGTTCTCCTGCCGTCTAGCCCCCGAAAGTATAACATAGTCCA
AATTGCCGGGATCCGTCTGGATCTCAAAGTGGTTGTCGCACAAGTGGCAC
TTCATCCGGAACTTAAAAACCGGCGTAGTGTAGTACATGCCCACCTTGGT
CTTCTCCGCATTGTAGCGCACGCCCATGCCGATGTGGTTCTTGCATCCAT
CACACCAGATATTGTAGGGCATCTCAAAGCGGATGATGATGATTTCCAGG
TGAATCTTGCGGGCCCGTTCCCGCAGGGCGTGGGTTCC
BO06541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-PA | 951 | CG15084-RA | 79..948 | 888..19 | 4325 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-RA | 1120 | CG15084-RA | 171..1040 | 888..19 | 4335 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18851014..18851883 | 888..19 | 4335 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:56:50 has no hits.
BO06541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:33 Download gff for
BO06541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-PA | 79..951 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:18 Download gff for
BO06541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-PA | 79..951 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:16 Download gff for
BO06541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 171..1040 | 19..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:51 Download gff for
BO06541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 171..1040 | 19..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:51 Download gff for
BO06541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18851014..18851883 | 19..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:16 Download gff for
BO06541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14738519..14739388 | 19..888 | 99 | | Minus |
BO06541.5prime Sequence
786 bp (784 high quality bases) assembled on 2005-12-03
> BO06541.5prime
GAAGTTATCAGTCGACATGGGTGAACGCAAGGGACAGAACAAGTACTATC
CGCCCGACTATGATCCGAAGAAGGGCGGTCTCAACAAGTTCCAGGGAACC
CACGCCCTGCGGGAACGGGCCCGCAAGATTCACCTGGGAATCATCATCAT
CCGCTTTGAGATGCCCTACAATATCTGGTGTGATGGATGCAAGAACCACA
TCGGCATGGGCGTGCGCTACAATGCGGAGAAGACCAAGGTGGGCATGTAC
TACACTACGCCGGTTTTTAAGTTCCGGATGAAGTGCCACTTGTGCGACAA
CCACTTTGAGATCCAGACGGATCCCGGCAATTTGGACTATGTTATACTTT
CGGGGGCTAGACGGCAGGAGAACCGCTGGGATCCCTTGCAGAACGAACAA
GTTGTACCGGAAACCAAGGAGGTACAAAAGCGTCTCTTCGACGATGCCAT
GTACAAGTTGGAGCATCAAGCCAAGGATGCTAAGGCAGGGGCAGATGCCA
GGCCCGTGCTCCAGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGAC
AGCTATATGGCCAATAGTCGCCTACGCGCCGAGTTTCGCCAGCAGAAGAA
AGAGATCAATGGTCAGCAGGAGCTGGATCGACAGTTGTTGGCCAAGAGCA
GCTTGGACATTGCTCTCCTTCCGGAGACCACACAAGATCGCGAAATGGCA
GCCCTGATGAAGTTGCAGACGAAGTCAGCTCTGGAACGGGAATCCGAGCA
GCGGTTGGAGCTGCTTATGCGTCCAGCGCTTCCCGG
BO06541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-PA | 951 | CG15084-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-RA | 1120 | CG15084-RA | 93..862 | 17..786 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18850936..18851705 | 17..786 | 3850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:02:19 has no hits.
BO06541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:34 Download gff for
BO06541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-PA | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:19 Download gff for
BO06541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-PA | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:23 Download gff for
BO06541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 93..862 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:02 Download gff for
BO06541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 93..862 | 17..786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:02 Download gff for
BO06541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18850936..18851705 | 17..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:23 Download gff for
BO06541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14738441..14739210 | 17..786 | 100 | | Plus |
BO06541.complete Sequence
982 bp (982 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630439
> BO06541.complete
GAAGTTATCAGTCGACATGGGTGAACGCAAGGGACAGAACAAGTACTATC
CGCCCGACTATGATCCGAAGAAGGGCGGTCTCAACAAGTTCCAGGGAACC
CACGCCCTGCGGGAACGGGCCCGCAAGATTCACCTGGGAATCATCATCAT
CCGCTTTGAGATGCCCTACAATATCTGGTGTGATGGATGCAAGAACCACA
TCGGCATGGGCGTGCGCTACAATGCGGAGAAGACCAAGGTGGGCATGTAC
TACACTACGCCGGTTTTTAAGTTCCGGATGAAGTGCCACTTGTGCGACAA
CCACTTTGAGATCCAGACGGATCCCGGCAATTTGGACTATGTTATACTTT
CGGGGGCTAGACGGCAGGAGAACCGCTGGGATCCCTTGCAGAACGAACAA
GTTGTACCGGAAACCAAGGAGGTACAAAAGCGTCTCTTCGACGATGCCAT
GTACAAGTTGGAGCATCAAGCCAAGGATGCTAAGGCAGGGGCAGATGCCA
GGCCCGTGCTCCAGAAACTAGTGGAGCGCAACATGAGCGTCTGGGATGAC
AGCTATATGGCCAATAGTCGCCTACGCGCCGAGTTTCGCCAGCAGAAGAA
AGAGATCAATGGTCAGCAGGAGCTGGATCGACAGTTGTTGGCCAAGAGCA
GCTTGGACATTGCTCTCCTTCCGGAGACCACACAAGATCGCGAAATGGCA
GCCCTGATGAAGTTGCAGACGAAGTCAGCTCTGGAACGGGAATCCGAGCA
GCGGTTGGAGCTGCTTATGCGTCCAGCGCTTCCCGGAGCAACAGTCACCA
CATTTGGTGGACTCAAGCGACAAAAGGTTCTGAATACCCAGCTCCAAGTA
CAGGATCTTGGCATACGGCGTAAAAAGTTGGAAGAAACTACATCTTCAGC
CACGAACGAAAAACCCATAAGCTTAGTGGGGGATTACTCCTCCTCAGACA
ATGATTCCAACGGCGCAAGCTTTCTAGACCAT
BO06541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-RA | 951 | CG15084-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-RA | 1120 | CG15084-RA | 93..1040 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18850936..18851883 | 17..964 | 4740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:59:17 has no hits.
BO06541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:48 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 1..951 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:34 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 76..1023 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:08 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 93..1040 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:48 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 76..1023 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:46 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15084-RA | 93..1040 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:46 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18850936..18851883 | 17..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:08 Download gff for
BO06541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14738441..14739388 | 17..966 | 99 | | Plus |
BO06541.pep Sequence
Translation from 16 to 982
> BO06541.pep
MGERKGQNKYYPPDYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMP
YNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQ
TDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEH
QAKDAKAGADARPVLQKLVERNMSVWDDSYMANSRLRAEFRQQKKEINGQ
QELDRQLLAKSSLDIALLPETTQDREMAALMKLQTKSALERESEQRLELL
MRPALPGATVTTFGGLKRQKVLNTQLQVQDLGIRRKKLEETTSSATNEKP
ISLVGDYSSSDNDSNGASFLDH
BO06541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15084-PA | 316 | CG15084-PA | 1..316 | 1..316 | 1651 | 100 | Plus |
CG8435-PA | 333 | CG8435-PA | 1..195 | 1..204 | 185 | 26.9 | Plus |