Clone Sequence Records
BO06545.5prime Sequence
548 bp (547 high quality bases) assembled on 2005-12-03
> BO06545.5prime
GAAGTTATCAGTCGACATGGTAGCCGGGATGCAGCGCAACTACAGGCACT
ATTTTAAGCCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCCGGAA
GCCATGGCCGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGTGCCA
GAGGTTGGACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAA
GAAGATCCCAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGGAAAT
GGGGTCAGCAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAA
GAAGAAGGAAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATTTACC
TGTTCGCCCTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGACATC
AACCAGCACTACAAGTCGCAGAACAAAGGGGACAAGCGACTGCGCCGGTG
CTCGCTGCAATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCAA
AAGGTATTTCACCAAAATCTTTGCCAAAGTTTGCAAGCTTTCTAGACC
BO06545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-PA | 519 | CG8248-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-RA | 1372 | CG8248-RA | 443..959 | 16..532 | 2585 | 100 | Plus |
| CG8248-RB | 1369 | CG8248-RB | 443..956 | 16..532 | 2530 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8919524..8919926 | 418..16 | 2015 | 100 | Minus |
| 2R | 25286936 | 2R | 8919353..8919467 | 532..418 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:02:33 has no hits.
BO06545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:41 Download gff for
BO06545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-PA | 1..519 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:30 Download gff for
BO06545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-PA | 1..519 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:07 Download gff for
BO06545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 440..968 | 12..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:00 Download gff for
BO06545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 440..968 | 12..543 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:00 Download gff for
BO06545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8919344..8919466 | 419..543 | 96 | <- | Minus |
| 2R | 8919524..8919929 | 12..418 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:07 Download gff for
BO06545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4806849..4806971 | 419..543 | 96 | <- | Minus |
| arm_2R | 4807029..4807434 | 12..418 | 99 | | Minus |
BO06545.3prime Sequence
548 bp (547 high quality bases) assembled on 2005-12-03
> BO06545.3prime
ATGGTCTAGAAAGCTTGCAAACTTTGGCAAAGATTTTGGTGAAATACCTT
TTGATGACCGGCGATCCTGCTTGTGGATCTGGGCATAAGATTGCAGCGAG
CACCGGCGCAGTCGCTTGTCCCCTTTGTTCTGCGACTTGTAGTGCTGGTT
GATGTCCGAGGCGGCCTTCAGAAGCAGATAGACAAACACAAGGGCGAACA
GGTAAATAATGGGCTCCGCTGTGTTACTCTTCTTGCCAACTTCCTTCTTC
TTGTGCCCCTCCGGGGACTTTATCAAACGACGAGGTTGCTTGCTGACCCC
ATTTCCAGTGCCGTTTTTGGTTCTCTTCGTGGGCCTGCCTTGGGATCTTC
TTGAAACTGCCTGATTCCGATTGGATTCCTTTCCGAAAACGTCCAACCTC
TGGCACGATGCATCTGGAGCGGCGACATCCAATTCGGCGTCGGCCATGGC
TTCCGGCTGGGCATGGTGCAGGTCGAAGGCAGCCACGCCCGGCTTAAAAT
AGTGCCTGTAGTTGCGCTGCATCCCGGCTACCATGTCGACTGATAACT
BO06545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-PA | 519 | CG8248-RA | 1..516 | 534..19 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-RA | 1372 | CG8248-RA | 443..959 | 535..19 | 2585 | 100 | Minus |
| CG8248-RB | 1369 | CG8248-RB | 443..956 | 535..19 | 2530 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8919524..8919926 | 133..535 | 2015 | 100 | Plus |
| 2R | 25286936 | 2R | 8919353..8919467 | 19..133 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:55:13 has no hits.
BO06545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:40 Download gff for
BO06545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-PA | 1..519 | 18..534 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:28 Download gff for
BO06545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-PA | 1..519 | 18..534 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:18 Download gff for
BO06545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 440..968 | 8..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:01 Download gff for
BO06545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 440..968 | 8..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:01 Download gff for
BO06545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8919524..8919929 | 133..539 | 99 | | Plus |
| 2R | 8919344..8919466 | 8..132 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:18 Download gff for
BO06545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4806849..4806971 | 8..132 | 96 | <- | Plus |
| arm_2R | 4807029..4807434 | 133..539 | 99 | | Plus |
BO06545.complete Sequence
550 bp (550 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630440
> BO06545.complete
GAAGTTATCAGTCGACATGGTAGCCGGGATGCAGCGCAACTACAGGCACT
ATTTTAAGCCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCCGGAA
GCCATGGCCGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGTGCCA
GAGGTTGGACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAA
GAAGATCCCAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGGAAAT
GGGGTCAGCAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAA
GAAGAAGGAAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATTTACC
TGTTCGCCCTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGACATC
AACCAGCACTACAAGTCGCAGAACAAAGGGGACAAGCGACTGCGCCGGTG
CTCGCTGCAATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCAA
AAGGTATTTCACCAAAATCTTTGCCAAAGTTTGCAAGCTTTCTAGACCAT
BO06545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-RA | 684 | CG8248-PA | 165..681 | 16..532 | 2585 | 100 | Plus |
| CG8248-RB | 681 | CG8248-PB | 165..678 | 16..532 | 2505 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-RA | 1372 | CG8248-RA | 443..959 | 16..532 | 2585 | 100 | Plus |
| CG8248-RB | 1369 | CG8248-RB | 443..956 | 16..532 | 2505 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8919524..8919926 | 418..16 | 2015 | 100 | Minus |
| 2R | 25286936 | 2R | 8919353..8919467 | 532..418 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:05:45 has no hits.
BO06545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:49 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 162..684 | 12..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:36 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 438..966 | 12..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:06 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 444..959 | 17..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:50 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 438..966 | 12..543 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:53 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8248-RA | 444..959 | 17..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:53 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8919349..8919466 | 419..534 | 98 | <- | Minus |
| 2R | 8919524..8919925 | 17..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:06 Download gff for
BO06545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4806854..4806971 | 419..534 | 98 | <- | Minus |
| arm_2R | 4807029..4807430 | 17..418 | 100 | | Minus |
BO06545.pep Sequence
Translation from 16 to 550
> BO06545.pep
MVAGMQRNYRHYFKPGVAAFDLHHAQPEAMADAELDVAAPDASCQRLDVF
GKESNRNQAVSRRSQGRPTKRTKNGTGNGVSKQPRRLIKSPEGHKKKEVG
KKSNTAEPIIYLFALVFVYLLLKAASDINQHYKSQNKGDKRLRRCSLQSY
AQIHKQDRRSSKGISPKSLPKFASFLDH
BO06545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8248-PA | 227 | CG8248-PA | 56..227 | 1..172 | 891 | 100 | Plus |
| CG8248-PB | 226 | CG8248-PB | 56..226 | 1..172 | 874 | 99.4 | Plus |
