Clone Sequence Records
BO06546.3prime Sequence
785 bp (718 high quality bases) assembled on 2005-12-03
> BO06546.3prime
ATGGTCTAGAAAGCTTGCAAATTTATAGATGACATGTTCGCAAAACTTGT
GAATAAGGTTAATTCGCTCGTCAAATCTCTTCCCTTTGTACTCAAATTCC
GAATAAGAAACGGTGTTGATCACTTTAAAGTCTGTTGCTTTTCCAACCTT
TTGAGAGAATCTAGAGGTCCAGAGTGCGGTGACGGCAGCTGGGCGTTTTG
ATCTTAGTTTATCATCGATATCCTCCAGGCCCTTTCCTTCGGCCAGCTCC
TTGGTCAGTTCAATTGTGAACTGGGACAACGATCGACCCAATCCCAATCG
CTCGTGGCTCGGTAAAGTGGCCAGAAACATCAGTTCACAGAAGCACACCA
TGTTGAACATGGCACACACATCAATTCTTCCATCCACTTCGATCATAAAG
TCCATTAGACGCCTTGCCTGAGGACTTTTAACTTCCTCGTTCCGGAATTT
TAAAAAGAAGTGATCCTCGCCAGGTGGTGGTGCATACTGAATTTTATTAA
ACGACACGGACACTACGCGACCCGTATCCGCCTCTTTAACCAACAATGAG
ACACCATCCAGAGCGGTTTTTCTGCACAACTCTCGCAAGTCCAAACGAGC
TTGCCGATTTTCCGGCAAATTAATTTCACAGGCAACACACACAGATTCGT
TGAGAAAGAATGAGCCGTCAAGAACATCTAGCGCCTCTTCCAGGTCGGAG
TGAGTGACACTGCGCACCTCAAATTTGCCGTCGTGCAACGTTCCCCAGAG
TCTTCCGTTTTCCATCCGCATGTCGACTGATAACT
BO06546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-PA | 756 | CG31248-RA | 1..753 | 771..19 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 832 | CG31248-RB | 56..808 | 771..19 | 3765 | 100 | Minus |
CG31248-RA | 977 | CG31248-RA | 201..953 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7130414..7130884 | 489..19 | 2355 | 100 | Minus |
3R | 32079331 | 3R | 7130174..7130362 | 675..487 | 945 | 100 | Minus |
3R | 32079331 | 3R | 7129624..7129679 | 729..674 | 280 | 100 | Minus |
3R | 32079331 | 3R | 7129520..7129563 | 771..728 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:52:28 has no hits.
BO06546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:43 Download gff for
BO06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 15..771 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:31 Download gff for
BO06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 15..771 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:39 Download gff for
BO06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..956 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:42 Download gff for
BO06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..956 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:42 Download gff for
BO06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7129518..7129562 | 729..774 | 97 | -> | Minus |
3R | 7129625..7129677 | 676..728 | 100 | -> | Minus |
3R | 7130174..7130362 | 487..675 | 100 | -> | Minus |
3R | 7130417..7130887 | 15..486 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:39 Download gff for
BO06546.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2955240..2955284 | 729..774 | 97 | -> | Minus |
arm_3R | 2955347..2955399 | 676..728 | 100 | -> | Minus |
arm_3R | 2955896..2956084 | 487..675 | 100 | -> | Minus |
arm_3R | 2956139..2956609 | 15..486 | 99 | | Minus |
BO06546.5prime Sequence
785 bp (784 high quality bases) assembled on 2005-12-03
> BO06546.5prime
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTGCAAGCTTTCTAGACC
BO06546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-PA | 756 | CG31248-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 832 | CG31248-RB | 56..808 | 17..769 | 3765 | 100 | Plus |
CG31248-RA | 977 | CG31248-RA | 201..953 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7130414..7130884 | 299..769 | 2355 | 100 | Plus |
3R | 32079331 | 3R | 7130174..7130362 | 113..301 | 945 | 100 | Plus |
3R | 32079331 | 3R | 7129624..7129679 | 59..114 | 280 | 100 | Plus |
3R | 32079331 | 3R | 7129520..7129563 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:14:38 has no hits.
BO06546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:44 Download gff for
BO06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:32 Download gff for
BO06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-PA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:43 Download gff for
BO06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..956 | 14..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:15 Download gff for
BO06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..956 | 14..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:15 Download gff for
BO06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7129518..7129562 | 14..59 | 97 | -> | Plus |
3R | 7129625..7129677 | 60..112 | 100 | -> | Plus |
3R | 7130174..7130362 | 113..301 | 100 | -> | Plus |
3R | 7130417..7130887 | 302..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:43 Download gff for
BO06546.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2955240..2955284 | 14..59 | 97 | -> | Plus |
arm_3R | 2955347..2955399 | 60..112 | 100 | -> | Plus |
arm_3R | 2955896..2956084 | 113..301 | 100 | -> | Plus |
arm_3R | 2956139..2956609 | 302..773 | 99 | | Plus |
BO06546.complete Sequence
787 bp (787 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630441
> BO06546.complete
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTGCAAGCTTTCTAGACCAT
BO06546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 756 | CG31248-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG31248-RA | 756 | CG31248-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-RB | 832 | CG31248-RB | 56..808 | 17..769 | 3765 | 100 | Plus |
CG31248-RA | 977 | CG31248-RA | 201..953 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7130414..7130884 | 299..769 | 2355 | 100 | Plus |
3R | 32079331 | 3R | 7130174..7130362 | 113..301 | 945 | 100 | Plus |
3R | 32079331 | 3R | 7129624..7129679 | 59..114 | 280 | 100 | Plus |
3R | 32079331 | 3R | 7129520..7129563 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:37 has no hits.
BO06546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:50 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:37 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..956 | 14..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:28 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 201..953 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:51 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 199..956 | 14..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:11 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31248-RA | 201..953 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:11 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7129520..7129562 | 17..59 | 100 | -> | Plus |
3R | 7129625..7129677 | 60..112 | 100 | -> | Plus |
3R | 7130174..7130362 | 113..301 | 100 | -> | Plus |
3R | 7130417..7130884 | 302..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:28 Download gff for
BO06546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2955242..2955284 | 17..59 | 100 | -> | Plus |
arm_3R | 2955347..2955399 | 60..112 | 100 | -> | Plus |
arm_3R | 2955896..2956084 | 113..301 | 100 | -> | Plus |
arm_3R | 2956139..2956606 | 302..771 | 99 | | Plus |
BO06546.pep Sequence
Translation from 16 to 787
> BO06546.pep
MRMENGRLWGTLHDGKFEVRSVTHSDLEEALDVLDGSFFLNESVCVACEI
NLPENRQARLDLRELCRKTALDGVSLLVKEADTGRVVSVSFNKIQYAPPP
GEDHFFLKFRNEEVKSPQARRLMDFMIEVDGRIDVCAMFNMVCFCELMFL
ATLPSHERLGLGRSLSQFTIELTKELAEGKGLEDIDDKLRSKRPAAVTAL
WTSRFSQKVGKATDFKVINTVSYSEFEYKGKRFDERINLIHKFCEHVIYK
FASFLDH
BO06546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31248-PB | 251 | CG31248-PB | 1..251 | 1..251 | 1306 | 100 | Plus |
CG31248-PA | 251 | CG31248-PA | 1..251 | 1..251 | 1306 | 100 | Plus |
CG31493-PA | 246 | CG31493-PA | 7..218 | 12..225 | 173 | 26.6 | Plus |