Clone BO06546 Report

Search the DGRC for BO06546

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG31248-RA
Protein status:BO06546.pep: validated full length
Sequenced Size:787

Clone Sequence Records

BO06546.3prime Sequence

785 bp (718 high quality bases) assembled on 2005-12-03

> BO06546.3prime
ATGGTCTAGAAAGCTTGCAAATTTATAGATGACATGTTCGCAAAACTTGT
GAATAAGGTTAATTCGCTCGTCAAATCTCTTCCCTTTGTACTCAAATTCC
GAATAAGAAACGGTGTTGATCACTTTAAAGTCTGTTGCTTTTCCAACCTT
TTGAGAGAATCTAGAGGTCCAGAGTGCGGTGACGGCAGCTGGGCGTTTTG
ATCTTAGTTTATCATCGATATCCTCCAGGCCCTTTCCTTCGGCCAGCTCC
TTGGTCAGTTCAATTGTGAACTGGGACAACGATCGACCCAATCCCAATCG
CTCGTGGCTCGGTAAAGTGGCCAGAAACATCAGTTCACAGAAGCACACCA
TGTTGAACATGGCACACACATCAATTCTTCCATCCACTTCGATCATAAAG
TCCATTAGACGCCTTGCCTGAGGACTTTTAACTTCCTCGTTCCGGAATTT
TAAAAAGAAGTGATCCTCGCCAGGTGGTGGTGCATACTGAATTTTATTAA
ACGACACGGACACTACGCGACCCGTATCCGCCTCTTTAACCAACAATGAG
ACACCATCCAGAGCGGTTTTTCTGCACAACTCTCGCAAGTCCAAACGAGC
TTGCCGATTTTCCGGCAAATTAATTTCACAGGCAACACACACAGATTCGT
TGAGAAAGAATGAGCCGTCAAGAACATCTAGCGCCTCTTCCAGGTCGGAG
TGAGTGACACTGCGCACCTCAAATTTGCCGTCGTGCAACGTTCCCCAGAG
TCTTCCGTTTTCCATCCGCATGTCGACTGATAACT

BO06546.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-PA 756 CG31248-RA 1..753 771..19 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 832 CG31248-RB 56..808 771..19 3765 100 Minus
CG31248-RA 977 CG31248-RA 201..953 771..19 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7130414..7130884 489..19 2355 100 Minus
3R 32079331 3R 7130174..7130362 675..487 945 100 Minus
3R 32079331 3R 7129624..7129679 729..674 280 100 Minus
3R 32079331 3R 7129520..7129563 771..728 220 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:52:28 has no hits.

BO06546.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:43 Download gff for BO06546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 15..771 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:31 Download gff for BO06546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 15..771 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:39 Download gff for BO06546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..956 15..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:42 Download gff for BO06546.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..956 15..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:42 Download gff for BO06546.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7129518..7129562 729..774 97 -> Minus
3R 7129625..7129677 676..728 100 -> Minus
3R 7130174..7130362 487..675 100 -> Minus
3R 7130417..7130887 15..486 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:39 Download gff for BO06546.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2955240..2955284 729..774 97 -> Minus
arm_3R 2955347..2955399 676..728 100 -> Minus
arm_3R 2955896..2956084 487..675 100 -> Minus
arm_3R 2956139..2956609 15..486 99   Minus

BO06546.5prime Sequence

785 bp (784 high quality bases) assembled on 2005-12-03

> BO06546.5prime
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTGCAAGCTTTCTAGACC

BO06546.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-PA 756 CG31248-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 832 CG31248-RB 56..808 17..769 3765 100 Plus
CG31248-RA 977 CG31248-RA 201..953 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7130414..7130884 299..769 2355 100 Plus
3R 32079331 3R 7130174..7130362 113..301 945 100 Plus
3R 32079331 3R 7129624..7129679 59..114 280 100 Plus
3R 32079331 3R 7129520..7129563 17..60 220 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:14:38 has no hits.

BO06546.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:44 Download gff for BO06546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:32 Download gff for BO06546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:43 Download gff for BO06546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..956 14..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:15 Download gff for BO06546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..956 14..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:15 Download gff for BO06546.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7129518..7129562 14..59 97 -> Plus
3R 7129625..7129677 60..112 100 -> Plus
3R 7130174..7130362 113..301 100 -> Plus
3R 7130417..7130887 302..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:43 Download gff for BO06546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2955240..2955284 14..59 97 -> Plus
arm_3R 2955347..2955399 60..112 100 -> Plus
arm_3R 2955896..2956084 113..301 100 -> Plus
arm_3R 2956139..2956609 302..773 99   Plus

BO06546.complete Sequence

787 bp (787 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630441

> BO06546.complete
GAAGTTATCAGTCGACATGCGGATGGAAAACGGAAGACTCTGGGGAACGT
TGCACGACGGCAAATTTGAGGTGCGCAGTGTCACTCACTCCGACCTGGAA
GAGGCGCTAGATGTTCTTGACGGCTCATTCTTTCTCAACGAATCTGTGTG
TGTTGCCTGTGAAATTAATTTGCCGGAAAATCGGCAAGCTCGTTTGGACT
TGCGAGAGTTGTGCAGAAAAACCGCTCTGGATGGTGTCTCATTGTTGGTT
AAAGAGGCGGATACGGGTCGCGTAGTGTCCGTGTCGTTTAATAAAATTCA
GTATGCACCACCACCTGGCGAGGATCACTTCTTTTTAAAATTCCGGAACG
AGGAAGTTAAAAGTCCTCAGGCAAGGCGTCTAATGGACTTTATGATCGAA
GTGGATGGAAGAATTGATGTGTGTGCCATGTTCAACATGGTGTGCTTCTG
TGAACTGATGTTTCTGGCCACTTTACCGAGCCACGAGCGATTGGGATTGG
GTCGATCGTTGTCCCAGTTCACAATTGAACTGACCAAGGAGCTGGCCGAA
GGAAAGGGCCTGGAGGATATCGATGATAAACTAAGATCAAAACGCCCAGC
TGCCGTCACCGCACTCTGGACCTCTAGATTCTCTCAAAAGGTTGGAAAAG
CAACAGACTTTAAAGTGATCAACACCGTTTCTTATTCGGAATTTGAGTAC
AAAGGGAAGAGATTTGACGAGCGAATTAACCTTATTCACAAGTTTTGCGA
ACATGTCATCTATAAATTTGCAAGCTTTCTAGACCAT

BO06546.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 756 CG31248-PB 1..753 17..769 3765 100 Plus
CG31248-RA 756 CG31248-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-RB 832 CG31248-RB 56..808 17..769 3765 100 Plus
CG31248-RA 977 CG31248-RA 201..953 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7130414..7130884 299..769 2355 100 Plus
3R 32079331 3R 7130174..7130362 113..301 945 100 Plus
3R 32079331 3R 7129624..7129679 59..114 280 100 Plus
3R 32079331 3R 7129520..7129563 17..60 220 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:37 has no hits.

BO06546.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:50 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:37 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..956 14..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:28 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 201..953 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:51 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 199..956 14..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:11 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
CG31248-RA 201..953 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:11 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7129520..7129562 17..59 100 -> Plus
3R 7129625..7129677 60..112 100 -> Plus
3R 7130174..7130362 113..301 100 -> Plus
3R 7130417..7130884 302..771 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:28 Download gff for BO06546.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2955242..2955284 17..59 100 -> Plus
arm_3R 2955347..2955399 60..112 100 -> Plus
arm_3R 2955896..2956084 113..301 100 -> Plus
arm_3R 2956139..2956606 302..771 99   Plus

BO06546.pep Sequence

Translation from 16 to 787

> BO06546.pep
MRMENGRLWGTLHDGKFEVRSVTHSDLEEALDVLDGSFFLNESVCVACEI
NLPENRQARLDLRELCRKTALDGVSLLVKEADTGRVVSVSFNKIQYAPPP
GEDHFFLKFRNEEVKSPQARRLMDFMIEVDGRIDVCAMFNMVCFCELMFL
ATLPSHERLGLGRSLSQFTIELTKELAEGKGLEDIDDKLRSKRPAAVTAL
WTSRFSQKVGKATDFKVINTVSYSEFEYKGKRFDERINLIHKFCEHVIYK
FASFLDH

BO06546.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31248-PB 251 CG31248-PB 1..251 1..251 1306 100 Plus
CG31248-PA 251 CG31248-PA 1..251 1..251 1306 100 Plus
CG31493-PA 246 CG31493-PA 7..218 12..225 173 26.6 Plus