Clone BO06547 Report

Search the DGRC for BO06547

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptAut1-RA
Protein status:BO06547.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO06547.3prime Sequence

762 bp (707 high quality bases) assembled on 2005-12-03

> BO06547.3prime
ATGGTCTAGAAAGCTTGCAGACATGTTGAAGTTTTGCGTAAAATCGTATT
CGATGGTTGGTATGACGGTCTGAACGAATTTGAGGAATATGATCAAGTAT
AAATGCACTCCCAGCTGACCGCCGCCCTCCTCTACCGTCTGTATAATCTT
CTTCATGATATCCGCATGCCGACATGGATGCACAGAGGCCATATTGGGAC
CTGGAAGATGCGGATGGGACTCCATGGTGACAGTTTTCTTCGCGTGATCC
TGCGAGACATCCTCGTACATCTGTTCCACGGTCAGTGGCTTGCGCTGCTC
ATCATAGCCCACCACCCAGAGTCGCGGCGTCTGATAGTACTTATCATAGC
TGATGTGCAGGTCGTACGTGCGTGTATGGAGCACAGAGTCACCGCTGGCC
TCCGCGTCGCCCGATGCGGCTGCCACTGGGCTGGCCTTTGCTTCCGGCTC
CGGCTTGCGTGTCGTGGTGGCTACAGCCGGATCGACCAGCTCCAGCATGC
CGCTCTCCTCGAAATCGTCCATGTCAATAGCCTCGTCGTCGTCCTCGTCT
TCAGCCTGGCCCCCAGCGCCCGGCGCAGATTTGTCGCTATCTGGAGTGTG
CATTTCTTCCTTTGTCTCCTCCATTGTCAGTTCGCAGATCTTGTCCTCCA
GCTGGGTGGTGCCATCATCGTTCAGTTGATGAGTCTCCACCCAACCGCCG
TCACCGGACTCCTCCTCCACCAGCGTCTCCTCGCCGACGTATTCCATCTG
CTTGCAGCGACG

BO06547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6877-PA 993 Aut1-RA 247..990 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 1221 CG6877-RA 378..1121 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750383 611..19 2965 100 Minus
3L 28110227 3L 18749586..18749739 762..609 770 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:04:07 has no hits.

BO06547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:44 Download gff for BO06547.3prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-PA 247..993 15..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:33 Download gff for BO06547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6877-PA 247..993 15..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:24 Download gff for BO06547.3prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 378..1125 14..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:03 Download gff for BO06547.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 378..1125 14..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:03 Download gff for BO06547.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18749586..18749738 610..762 100 -> Minus
3L 18749793..18750387 14..609 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:24 Download gff for BO06547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18742686..18742838 610..762 100 -> Minus
arm_3L 18742893..18743487 14..609 99   Minus

BO06547.5prime Sequence

785 bp (784 high quality bases) assembled on 2005-12-03

> BO06547.5prime
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCANGATCACGCGA

BO06547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6877-PA 993 Aut1-RA 1..769 17..785 3826 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 1221 CG6877-RA 128..900 13..785 3839 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750162 414..785 1849 99.7 Plus
3L 28110227 3L 18749547..18749739 224..416 965 100 Plus
3L 28110227 3L 18749336..18749479 81..224 705 99.3 Plus
3L 28110227 3L 18748814..18748890 13..89 370 98.7 Plus
Blast to na_te.dros performed on 2015-02-13 01:13:26 has no hits.

BO06547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:45 Download gff for BO06547.5prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:35 Download gff for BO06547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6877-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:30 Download gff for BO06547.5prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 125..899 9..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:04 Download gff for BO06547.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 125..899 9..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:04 Download gff for BO06547.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18748811..18748889 9..88 96 -> Plus
3L 18749344..18749479 89..224 100 -> Plus
3L 18749548..18749738 225..415 100 -> Plus
3L 18749793..18750161 416..784 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:30 Download gff for BO06547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18741911..18741989 9..88 96 -> Plus
arm_3L 18742444..18742579 89..224 100 -> Plus
arm_3L 18742648..18742838 225..415 100 -> Plus
arm_3L 18742893..18743261 416..784 99   Plus

BO06547.complete Sequence

1024 bp (1024 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630442

> BO06547.complete
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCAGGATCACGCGAAGAAAACTGTCACCA
TGGAGTCCCATCCGCATCTTCCAGGTCCCAATATGGCCTCTGTGCATCCA
TGTCGGCATGCGGATATCATGAAGAAGATTATACAGACGGTAGAGGAGGG
CGGCGGTCAGCTGGGAGTGCATTTATACTTGATCATATTCCTCAAATTCG
TTCAGACCGTCATACCAACCATCGAATACGATTTTACGCAAAACTTCAAC
ATGTCTGCAAGCTTTCTAGACCAT

BO06547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 993 CG6877-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 1221 CG6877-RA 128..1121 13..1006 4955 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750383 414..1006 2965 100 Plus
3L 28110227 3L 18749547..18749739 224..416 965 100 Plus
3L 28110227 3L 18749336..18749479 81..224 705 99.3 Plus
3L 28110227 3L 18748814..18748890 13..89 370 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:17 has no hits.

BO06547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:52 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..993 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:39 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 104..1104 9..1011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:27 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 132..1121 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:52 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 104..1104 9..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:31 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 132..1121 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:31 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18748818..18748889 17..88 100 -> Plus
3L 18749344..18749479 89..224 100 -> Plus
3L 18749548..18749738 225..415 100 -> Plus
3L 18749793..18750383 416..1008 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:27 Download gff for BO06547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18741918..18741989 17..88 100 -> Plus
arm_3L 18742444..18742579 89..224 100 -> Plus
arm_3L 18742648..18742838 225..415 100 -> Plus
arm_3L 18742893..18743483 416..1008 99   Plus

BO06547.pep Sequence

Translation from 16 to 1024

> BO06547.pep
MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHC
PTWQWAAGDETKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGEETLVEEE
SGDGGWVETHQLNDDGTTQLEDKICELTMEETKEEMHTPDSDKSAPGAGG
QAEDEDDDEAIDMDDFEESGMLELVDPAVATTTRKPEPEAKASPVAAASG
DAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDEQRKPLTVEQMYED
VSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG
VHLYLIIFLKFVQTVIPTIEYDFTQNFNMSASFLDH

BO06547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-PA 330 CG6877-PA 1..330 1..330 1761 100 Plus