Clone Sequence Records
BO06547.3prime Sequence
762 bp (707 high quality bases) assembled on 2005-12-03
> BO06547.3prime
ATGGTCTAGAAAGCTTGCAGACATGTTGAAGTTTTGCGTAAAATCGTATT
CGATGGTTGGTATGACGGTCTGAACGAATTTGAGGAATATGATCAAGTAT
AAATGCACTCCCAGCTGACCGCCGCCCTCCTCTACCGTCTGTATAATCTT
CTTCATGATATCCGCATGCCGACATGGATGCACAGAGGCCATATTGGGAC
CTGGAAGATGCGGATGGGACTCCATGGTGACAGTTTTCTTCGCGTGATCC
TGCGAGACATCCTCGTACATCTGTTCCACGGTCAGTGGCTTGCGCTGCTC
ATCATAGCCCACCACCCAGAGTCGCGGCGTCTGATAGTACTTATCATAGC
TGATGTGCAGGTCGTACGTGCGTGTATGGAGCACAGAGTCACCGCTGGCC
TCCGCGTCGCCCGATGCGGCTGCCACTGGGCTGGCCTTTGCTTCCGGCTC
CGGCTTGCGTGTCGTGGTGGCTACAGCCGGATCGACCAGCTCCAGCATGC
CGCTCTCCTCGAAATCGTCCATGTCAATAGCCTCGTCGTCGTCCTCGTCT
TCAGCCTGGCCCCCAGCGCCCGGCGCAGATTTGTCGCTATCTGGAGTGTG
CATTTCTTCCTTTGTCTCCTCCATTGTCAGTTCGCAGATCTTGTCCTCCA
GCTGGGTGGTGCCATCATCGTTCAGTTGATGAGTCTCCACCCAACCGCCG
TCACCGGACTCCTCCTCCACCAGCGTCTCCTCGCCGACGTATTCCATCTG
CTTGCAGCGACG
BO06547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6877-PA | 993 | Aut1-RA | 247..990 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 1221 | CG6877-RA | 378..1121 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18749791..18750383 | 611..19 | 2965 | 100 | Minus |
3L | 28110227 | 3L | 18749586..18749739 | 762..609 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:04:07 has no hits.
BO06547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:44 Download gff for
BO06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-PA | 247..993 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:33 Download gff for
BO06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6877-PA | 247..993 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:22:24 Download gff for
BO06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 378..1125 | 14..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:46:03 Download gff for
BO06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg3-RA | 378..1125 | 14..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:46:03 Download gff for
BO06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18749586..18749738 | 610..762 | 100 | -> | Minus |
3L | 18749793..18750387 | 14..609 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:22:24 Download gff for
BO06547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18742686..18742838 | 610..762 | 100 | -> | Minus |
arm_3L | 18742893..18743487 | 14..609 | 99 | | Minus |
BO06547.5prime Sequence
785 bp (784 high quality bases) assembled on 2005-12-03
> BO06547.5prime
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCANGATCACGCGA
BO06547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6877-PA | 993 | Aut1-RA | 1..769 | 17..785 | 3826 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 1221 | CG6877-RA | 128..900 | 13..785 | 3839 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18749791..18750162 | 414..785 | 1849 | 99.7 | Plus |
3L | 28110227 | 3L | 18749547..18749739 | 224..416 | 965 | 100 | Plus |
3L | 28110227 | 3L | 18749336..18749479 | 81..224 | 705 | 99.3 | Plus |
3L | 28110227 | 3L | 18748814..18748890 | 13..89 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:13:26 has no hits.
BO06547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:45 Download gff for
BO06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:35 Download gff for
BO06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6877-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:30 Download gff for
BO06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 125..899 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:04 Download gff for
BO06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg3-RA | 125..899 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:04 Download gff for
BO06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18748811..18748889 | 9..88 | 96 | -> | Plus |
3L | 18749344..18749479 | 89..224 | 100 | -> | Plus |
3L | 18749548..18749738 | 225..415 | 100 | -> | Plus |
3L | 18749793..18750161 | 416..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:30 Download gff for
BO06547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18741911..18741989 | 9..88 | 96 | -> | Plus |
arm_3L | 18742444..18742579 | 89..224 | 100 | -> | Plus |
arm_3L | 18742648..18742838 | 225..415 | 100 | -> | Plus |
arm_3L | 18742893..18743261 | 416..784 | 99 | | Plus |
BO06547.complete Sequence
1024 bp (1024 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630442
> BO06547.complete
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCAGGATCACGCGAAGAAAACTGTCACCA
TGGAGTCCCATCCGCATCTTCCAGGTCCCAATATGGCCTCTGTGCATCCA
TGTCGGCATGCGGATATCATGAAGAAGATTATACAGACGGTAGAGGAGGG
CGGCGGTCAGCTGGGAGTGCATTTATACTTGATCATATTCCTCAAATTCG
TTCAGACCGTCATACCAACCATCGAATACGATTTTACGCAAAACTTCAAC
ATGTCTGCAAGCTTTCTAGACCAT
BO06547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 993 | CG6877-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 1221 | CG6877-RA | 128..1121 | 13..1006 | 4955 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18749791..18750383 | 414..1006 | 2965 | 100 | Plus |
3L | 28110227 | 3L | 18749547..18749739 | 224..416 | 965 | 100 | Plus |
3L | 28110227 | 3L | 18749336..18749479 | 81..224 | 705 | 99.3 | Plus |
3L | 28110227 | 3L | 18748814..18748890 | 13..89 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:17 has no hits.
BO06547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:52 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:39 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 104..1104 | 9..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:27 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 132..1121 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:52 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 104..1104 | 9..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:31 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg3-RA | 132..1121 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:31 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18748818..18748889 | 17..88 | 100 | -> | Plus |
3L | 18749344..18749479 | 89..224 | 100 | -> | Plus |
3L | 18749548..18749738 | 225..415 | 100 | -> | Plus |
3L | 18749793..18750383 | 416..1008 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:27 Download gff for
BO06547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18741918..18741989 | 17..88 | 100 | -> | Plus |
arm_3L | 18742444..18742579 | 89..224 | 100 | -> | Plus |
arm_3L | 18742648..18742838 | 225..415 | 100 | -> | Plus |
arm_3L | 18742893..18743483 | 416..1008 | 99 | | Plus |
BO06547.pep Sequence
Translation from 16 to 1024
> BO06547.pep
MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHC
PTWQWAAGDETKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGEETLVEEE
SGDGGWVETHQLNDDGTTQLEDKICELTMEETKEEMHTPDSDKSAPGAGG
QAEDEDDDEAIDMDDFEESGMLELVDPAVATTTRKPEPEAKASPVAAASG
DAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDEQRKPLTVEQMYED
VSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG
VHLYLIIFLKFVQTVIPTIEYDFTQNFNMSASFLDH
BO06547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-PA | 330 | CG6877-PA | 1..330 | 1..330 | 1761 | 100 | Plus |