Clone Sequence Records
BO06553.3prime Sequence
827 bp (802 high quality bases) assembled on 2005-12-03
> BO06553.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCTGGAGCCTGTGGCGGAACTACCT
CGGCGGGGGGATTAGCGTTGCGGAAGTTGGGGAACTGTTCCCAAGGCGCC
GACAAGTCAAACTTCCTGAACTCCTGGGCCAACTCCAAGGGCTCGCAGAC
GACTCGCTTCTTCTCATCATCGTAGCGCAGCTCTACGTAGCCGGACAGCG
GGAAGTCGCGGCGCTGGGGATGTCCCTCAAAACCGTAATCGGTCAGGATG
CGGCGCAAGTCGGGATGGTTGGCAAAGAACACGCCGTACATGTCCCAGAT
CTCACGTTCGTACCAGTTGGCCGCCTTATGCACCTCGCAGGCGGAGTCCA
GAGGAGTCAGCTCATCGGTGTAGGTCTTAACGCGGATGCGCGAATTGTAG
CGCAGCGAGAGCAAATTGTAGACCACCTCGAATCGGTTCTTGCGACAGGG
CACATCCACGCCGGCAATGTCAACCAGGTTGGTAAACTGCGCCTGATGAT
GATCCTTAAGGAACTGCAGCACGGGCACCACGCCCTCTGGCGCAATAAGC
ACCTCCAGCTCATCGCCGGCGGTCAGCTGCACCTTCTGCACGTACTTGGG
CAGGCACTCGGCCACATAGCGCCCGAAATCGGAGAGATGCGAGCGAGCGA
CTGCGTCCGGCTGGCGGACAGTGGGCTTATCCGCCTTCTTAGGCTCCACT
GGCGTTGTACTGGCCATCCGAAGAGCAGTGGATCCAGCAGCGGGCACCAC
ATGTTTGGCCGACAGAGCGGCGACTGCGGCACGGGCACCCAGATTCCTGA
TTAAGGCCGCCATGTCGACTGATAACT
BO06553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12079-PA | 798 | CG12079-RA | 1..795 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 976 | CG12079-RA | 107..901 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3158560..3159215 | 19..674 | 3280 | 100 | Plus |
3L | 28110227 | 3L | 3159274..3159349 | 675..750 | 380 | 100 | Plus |
3L | 28110227 | 3L | 3159409..3159472 | 750..813 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:15:10 has no hits.
BO06553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:54 Download gff for
BO06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:47 Download gff for
BO06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:45 Download gff for
BO06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 97..904 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:31 Download gff for
BO06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFS3-RA | 97..904 | 15..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:31 Download gff for
BO06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3159274..3159348 | 675..749 | 100 | <- | Plus |
3L | 3159409..3159482 | 750..827 | 93 | | Plus |
3L | 3158557..3159215 | 15..674 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:45 Download gff for
BO06553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3158557..3159215 | 15..674 | 99 | <- | Plus |
arm_3L | 3159274..3159348 | 675..749 | 100 | <- | Plus |
arm_3L | 3159409..3159482 | 750..827 | 93 | | Plus |
BO06553.5prime Sequence
827 bp (734 high quality bases) assembled on 2005-12-03
> BO06553.5prime
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAAGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGGCAAGCTTTCTAGACC
BO06553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12079-PA | 798 | CG12079-RA | 1..795 | 17..811 | 3950 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 976 | CG12079-RA | 107..901 | 17..811 | 3960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3158560..3159215 | 811..156 | 3265 | 99.8 | Minus |
3L | 28110227 | 3L | 3159274..3159349 | 155..80 | 380 | 100 | Minus |
3L | 28110227 | 3L | 3159409..3159472 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:52:51 has no hits.
BO06553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:55 Download gff for
BO06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:48 Download gff for
BO06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-PA | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:41 Download gff for
BO06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 97..904 | 3..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:48 Download gff for
BO06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFS3-RA | 97..904 | 3..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:48 Download gff for
BO06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3158557..3159215 | 156..815 | 99 | <- | Minus |
3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
3L | 3159409..3159482 | 3..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:41 Download gff for
BO06553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3158557..3159215 | 156..815 | 99 | <- | Minus |
arm_3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
arm_3L | 3159409..3159482 | 3..80 | 93 | | Minus |
BO06553.complete Sequence
829 bp (829 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630443
> BO06553.complete
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGGCAAGCTTTCTAGACCAT
BO06553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 798 | CG12079-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-RA | 976 | CG12079-RA | 107..901 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3158560..3159215 | 811..156 | 3280 | 100 | Minus |
3L | 28110227 | 3L | 3159274..3159349 | 155..80 | 380 | 100 | Minus |
3L | 28110227 | 3L | 3159409..3159472 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:06 has no hits.
BO06553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:53 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 1..798 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:41 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 92..899 | 3..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:07 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 107..901 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:53 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12079-RA | 92..899 | 3..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:05 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NDUFS3-RA | 107..901 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:05 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3158558..3159215 | 156..813 | 99 | <- | Minus |
3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
3L | 3159409..3159472 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:07 Download gff for
BO06553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3158558..3159215 | 156..813 | 99 | <- | Minus |
arm_3L | 3159274..3159348 | 81..155 | 100 | <- | Minus |
arm_3L | 3159409..3159472 | 17..80 | 100 | | Minus |
BO06553.pep Sequence
Translation from 16 to 829
> BO06553.pep
MAALIRNLGARAAVAALSAKHVVPAAGSTALRMASTTPVEPKKADKPTVR
QPDAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQ
FLKDHHQAQFTNLVDIAGVDVPCRKNRFEVVYNLLSLRYNSRIRVKTYTD
ELTPLDSACEVHKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQ
RRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNA
NPPAEVVPPQAPAKKASFLDH
BO06553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NDUFS3-PA | 265 | CG12079-PA | 1..265 | 1..265 | 1394 | 100 | Plus |