Clone BO06553 Report

Search the DGRC for BO06553

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG12079-RA
Protein status:BO06553.pep: validated full length
Sequenced Size:829

Clone Sequence Records

BO06553.3prime Sequence

827 bp (802 high quality bases) assembled on 2005-12-03

> BO06553.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCTGGAGCCTGTGGCGGAACTACCT
CGGCGGGGGGATTAGCGTTGCGGAAGTTGGGGAACTGTTCCCAAGGCGCC
GACAAGTCAAACTTCCTGAACTCCTGGGCCAACTCCAAGGGCTCGCAGAC
GACTCGCTTCTTCTCATCATCGTAGCGCAGCTCTACGTAGCCGGACAGCG
GGAAGTCGCGGCGCTGGGGATGTCCCTCAAAACCGTAATCGGTCAGGATG
CGGCGCAAGTCGGGATGGTTGGCAAAGAACACGCCGTACATGTCCCAGAT
CTCACGTTCGTACCAGTTGGCCGCCTTATGCACCTCGCAGGCGGAGTCCA
GAGGAGTCAGCTCATCGGTGTAGGTCTTAACGCGGATGCGCGAATTGTAG
CGCAGCGAGAGCAAATTGTAGACCACCTCGAATCGGTTCTTGCGACAGGG
CACATCCACGCCGGCAATGTCAACCAGGTTGGTAAACTGCGCCTGATGAT
GATCCTTAAGGAACTGCAGCACGGGCACCACGCCCTCTGGCGCAATAAGC
ACCTCCAGCTCATCGCCGGCGGTCAGCTGCACCTTCTGCACGTACTTGGG
CAGGCACTCGGCCACATAGCGCCCGAAATCGGAGAGATGCGAGCGAGCGA
CTGCGTCCGGCTGGCGGACAGTGGGCTTATCCGCCTTCTTAGGCTCCACT
GGCGTTGTACTGGCCATCCGAAGAGCAGTGGATCCAGCAGCGGGCACCAC
ATGTTTGGCCGACAGAGCGGCGACTGCGGCACGGGCACCCAGATTCCTGA
TTAAGGCCGCCATGTCGACTGATAACT

BO06553.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12079-PA 798 CG12079-RA 1..795 813..19 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 976 CG12079-RA 107..901 813..19 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3158560..3159215 19..674 3280 100 Plus
3L 28110227 3L 3159274..3159349 675..750 380 100 Plus
3L 28110227 3L 3159409..3159472 750..813 320 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:15:10 has no hits.

BO06553.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:54 Download gff for BO06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 15..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:47 Download gff for BO06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 15..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:00:45 Download gff for BO06553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 97..904 15..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:31 Download gff for BO06553.3prime
Subject Subject Range Query Range Percent Splice Strand
NDUFS3-RA 97..904 15..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:31 Download gff for BO06553.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3159274..3159348 675..749 100 <- Plus
3L 3159409..3159482 750..827 93   Plus
3L 3158557..3159215 15..674 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:00:45 Download gff for BO06553.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3158557..3159215 15..674 99 <- Plus
arm_3L 3159274..3159348 675..749 100 <- Plus
arm_3L 3159409..3159482 750..827 93   Plus

BO06553.5prime Sequence

827 bp (734 high quality bases) assembled on 2005-12-03

> BO06553.5prime
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAAGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGGCAAGCTTTCTAGACC

BO06553.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12079-PA 798 CG12079-RA 1..795 17..811 3950 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 976 CG12079-RA 107..901 17..811 3960 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3158560..3159215 811..156 3265 99.8 Minus
3L 28110227 3L 3159274..3159349 155..80 380 100 Minus
3L 28110227 3L 3159409..3159472 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:52:51 has no hits.

BO06553.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:55 Download gff for BO06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 17..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:48 Download gff for BO06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-PA 1..798 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:41 Download gff for BO06553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 97..904 3..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:48 Download gff for BO06553.5prime
Subject Subject Range Query Range Percent Splice Strand
NDUFS3-RA 97..904 3..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:48 Download gff for BO06553.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3158557..3159215 156..815 99 <- Minus
3L 3159274..3159348 81..155 100 <- Minus
3L 3159409..3159482 3..80 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:41 Download gff for BO06553.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3158557..3159215 156..815 99 <- Minus
arm_3L 3159274..3159348 81..155 100 <- Minus
arm_3L 3159409..3159482 3..80 93   Minus

BO06553.complete Sequence

829 bp (829 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630443

> BO06553.complete
GAAGTTATCAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTG
CCGCAGTCGCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCC
ACTGCTCTTCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGA
TAAGCCCACTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCG
ATTTCGGGCGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTG
CAGCTGACCGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGT
GGTGCCCGTGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCA
ACCTGGTTGACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTC
GAGGTGGTCTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGT
TAAGACCTACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGC
ATAAGGCGGCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTG
TTCTTTGCCAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTT
TGAGGGACATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGC
TGCGCTACGATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTG
GCCCAGGAGTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCC
CAACTTCCGCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTC
CAGCCAAGAAGGCAAGCTTTCTAGACCAT

BO06553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 798 CG12079-PA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-RA 976 CG12079-RA 107..901 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3158560..3159215 811..156 3280 100 Minus
3L 28110227 3L 3159274..3159349 155..80 380 100 Minus
3L 28110227 3L 3159409..3159472 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:06 has no hits.

BO06553.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:53 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 1..798 17..815 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:41 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 92..899 3..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:07 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 107..901 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:53 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
CG12079-RA 92..899 3..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:05 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
NDUFS3-RA 107..901 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:05 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3158558..3159215 156..813 99 <- Minus
3L 3159274..3159348 81..155 100 <- Minus
3L 3159409..3159472 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:07 Download gff for BO06553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3158558..3159215 156..813 99 <- Minus
arm_3L 3159274..3159348 81..155 100 <- Minus
arm_3L 3159409..3159472 17..80 100   Minus

BO06553.pep Sequence

Translation from 16 to 829

> BO06553.pep
MAALIRNLGARAAVAALSAKHVVPAAGSTALRMASTTPVEPKKADKPTVR
QPDAVARSHLSDFGRYVAECLPKYVQKVQLTAGDELEVLIAPEGVVPVLQ
FLKDHHQAQFTNLVDIAGVDVPCRKNRFEVVYNLLSLRYNSRIRVKTYTD
ELTPLDSACEVHKAANWYEREIWDMYGVFFANHPDLRRILTDYGFEGHPQ
RRDFPLSGYVELRYDDEKKRVVCEPLELAQEFRKFDLSAPWEQFPNFRNA
NPPAEVVPPQAPAKKASFLDH

BO06553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
NDUFS3-PA 265 CG12079-PA 1..265 1..265 1394 100 Plus