Clone BO06555 Report

Search the DGRC for BO06555

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG11836-RA
Protein status:BO06555.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO06555.3prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-03

> BO06555.3prime
ATGGTCTAGAAAGCTTGCTGAACACAGGCAGGTATTTTCTAAATTAGACT
TAATCCACGGTATGAATTTGCTCACTCTGGAGTAAACACCCGGATATCCT
TCGCGGCCGCAACCAACGCCCCAGGACACAATGCCGACGATGAAATACTT
AACGCCATTGGATAGCAACAGCGGTCCTCCACTGTCGCCCTGGCATGAGT
CCATGGAAGGCCTACCCGCACACAACATGGATGAGGTAATTCGAGTACTT
TTGTATCTTTGATTTCGGCATTCCGTGATGGACATGATTGGCACCTTAAC
TTGATTAACTATGGATGGTAGTTCTCCTCCCTCGGATGTCCGTCCCCAGC
CGACAACCGTTCCAATGCGACCTGCGGGGTCGTAATTATAGCGCGGTAGG
CAGATTGGCTTTATAATTTTAGAAAACGATATAGGCTTGCGAAGTCGCAA
CAGGGCAATGTCGTTGTTGTATGTATCGGGGTCAAAGCTCTTGTGCTTTA
TCACAGCCGTAACCGCACGTTGGATGGCCTGTGACTCCGAGGTGATCTCT
TGATCGTGGTCGCCGAATATGACTCTGATTTTGGATTTTCGCAGTTTCTT
CACGCAGTGAGCGGCCGATAGAACGTAATCCTTCGTCAGTAAGGATCCTC
CGCAATGGAACTTGCCGTCGTACACGATTCGTGCCATGTCGACTGATAAC
T

BO06555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-PB 672 CG11836-RB 1..669 687..19 3345 100 Minus
CG11836-PA 672 CG11836-RA 1..669 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..985 687..19 3345 100 Minus
CG11836-RE 1076 CG11836-RE 291..959 687..19 3345 100 Minus
CG11836-RI 1101 CG11836-RI 316..984 687..19 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 687..370 1590 100 Minus
3R 32079331 3R 25072318..25072595 296..19 1390 100 Minus
3R 32079331 3R 25072185..25072266 373..292 410 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:02:44 has no hits.

BO06555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:58 Download gff for BO06555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:53 Download gff for BO06555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:08 Download gff for BO06555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 19..687 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:33 Download gff for BO06555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 19..687 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:33 Download gff for BO06555.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25071810..25072125 372..687 100 -> Minus
3R 25072187..25072263 295..371 100 -> Minus
3R 25072320..25072597 20..294 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:08 Download gff for BO06555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 372..687 100 -> Minus
arm_3R 20897909..20897985 295..371 100 -> Minus
arm_3R 20898042..20898319 20..294 98 -> Minus

BO06555.5prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-03

> BO06555.5prime
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGAC
C

BO06555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-PB 672 CG11836-RB 1..669 17..685 3345 100 Plus
CG11836-PA 672 CG11836-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..985 17..685 3345 100 Plus
CG11836-RE 1076 CG11836-RE 291..959 17..685 3345 100 Plus
CG11836-RI 1101 CG11836-RI 316..984 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 17..334 1590 100 Plus
3R 32079331 3R 25072318..25072595 408..685 1390 100 Plus
3R 32079331 3R 25072185..25072266 331..412 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:31:08 has no hits.

BO06555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:59 Download gff for BO06555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:54 Download gff for BO06555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:47 Download gff for BO06555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 17..685 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:32 Download gff for BO06555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 17..685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:32 Download gff for BO06555.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25071810..25072125 17..332 100 -> Plus
3R 25072187..25072263 333..409 100 -> Plus
3R 25072320..25072597 410..684 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:47 Download gff for BO06555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 17..332 100 -> Plus
arm_3R 20897909..20897985 333..409 100 -> Plus
arm_3R 20898042..20898319 410..684 98 -> Plus

BO06555.complete Sequence

703 bp (703 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630445

> BO06555.complete
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGAC
CAT

BO06555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 672 CG11836-PF 1..669 17..685 3345 100 Plus
CG11836-RE 672 CG11836-PE 1..669 17..685 3345 100 Plus
CG11836-RI 846 CG11836-PI 175..843 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-RF 1102 CG11836-RF 317..985 17..685 3345 100 Plus
CG11836-RE 1076 CG11836-RE 291..959 17..685 3345 100 Plus
CG11836-RI 1101 CG11836-RI 316..984 17..685 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25071810..25072127 17..334 1590 100 Plus
3R 32079331 3R 25072318..25072595 408..685 1390 100 Plus
3R 32079331 3R 25072185..25072266 331..412 410 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:19:15 has no hits.

BO06555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:55 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:45 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 305..973 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:54 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:55 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RC 305..973 17..685 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:22 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
CG11836-RI 316..984 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:22 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25072320..25072595 410..687 99   Plus
3R 25071810..25072125 17..332 100 -> Plus
3R 25072187..25072263 333..409 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:54 Download gff for BO06555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20897532..20897847 17..332 100 -> Plus
arm_3R 20897909..20897985 333..409 100 -> Plus
arm_3R 20898042..20898317 410..687 99   Plus

BO06555.pep Sequence

Translation from 16 to 703

> BO06555.pep
MARIVYDGKFHCGGSLLTKDYVLSAAHCVKKLRKSKIRVIFGDHDQEITS
ESQAIQRAVTAVIKHKSFDPDTYNNDIALLRLRKPISFSKIIKPICLPRY
NYDPAGRIGTVVGWGRTSEGGELPSIVNQVKVPIMSITECRNQRYKSTRI
TSSMLCAGRPSMDSCQGDSGGPLLLSNGVKYFIVGIVSWGVGCGREGYPG
VYSRVSKFIPWIKSNLENTCLCSASFLDH

BO06555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11836-PF 223 CG11836-PF 1..223 1..223 1182 100 Plus
CG11836-PE 223 CG11836-PE 1..223 1..223 1182 100 Plus
CG11836-PG 223 CG11836-PG 1..223 1..223 1182 100 Plus
CG11836-PC 223 CG11836-PC 1..223 1..223 1182 100 Plus
CG11836-PA 223 CG11836-PA 1..223 1..223 1182 100 Plus