Clone Sequence Records
BO06555.3prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06555.3prime
ATGGTCTAGAAAGCTTGCTGAACACAGGCAGGTATTTTCTAAATTAGACT
TAATCCACGGTATGAATTTGCTCACTCTGGAGTAAACACCCGGATATCCT
TCGCGGCCGCAACCAACGCCCCAGGACACAATGCCGACGATGAAATACTT
AACGCCATTGGATAGCAACAGCGGTCCTCCACTGTCGCCCTGGCATGAGT
CCATGGAAGGCCTACCCGCACACAACATGGATGAGGTAATTCGAGTACTT
TTGTATCTTTGATTTCGGCATTCCGTGATGGACATGATTGGCACCTTAAC
TTGATTAACTATGGATGGTAGTTCTCCTCCCTCGGATGTCCGTCCCCAGC
CGACAACCGTTCCAATGCGACCTGCGGGGTCGTAATTATAGCGCGGTAGG
CAGATTGGCTTTATAATTTTAGAAAACGATATAGGCTTGCGAAGTCGCAA
CAGGGCAATGTCGTTGTTGTATGTATCGGGGTCAAAGCTCTTGTGCTTTA
TCACAGCCGTAACCGCACGTTGGATGGCCTGTGACTCCGAGGTGATCTCT
TGATCGTGGTCGCCGAATATGACTCTGATTTTGGATTTTCGCAGTTTCTT
CACGCAGTGAGCGGCCGATAGAACGTAATCCTTCGTCAGTAAGGATCCTC
CGCAATGGAACTTGCCGTCGTACACGATTCGTGCCATGTCGACTGATAAC
T
BO06555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-PB | 672 | CG11836-RB | 1..669 | 687..19 | 3345 | 100 | Minus |
CG11836-PA | 672 | CG11836-RA | 1..669 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 1102 | CG11836-RF | 317..985 | 687..19 | 3345 | 100 | Minus |
CG11836-RE | 1076 | CG11836-RE | 291..959 | 687..19 | 3345 | 100 | Minus |
CG11836-RI | 1101 | CG11836-RI | 316..984 | 687..19 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25071810..25072127 | 687..370 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 25072318..25072595 | 296..19 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 25072185..25072266 | 373..292 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:02:44 has no hits.
BO06555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:58 Download gff for
BO06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:53 Download gff for
BO06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:08 Download gff for
BO06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..984 | 19..687 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:42:33 Download gff for
BO06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..984 | 19..687 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:42:33 Download gff for
BO06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25071810..25072125 | 372..687 | 100 | -> | Minus |
3R | 25072187..25072263 | 295..371 | 100 | -> | Minus |
3R | 25072320..25072597 | 20..294 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:08 Download gff for
BO06555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20897532..20897847 | 372..687 | 100 | -> | Minus |
arm_3R | 20897909..20897985 | 295..371 | 100 | -> | Minus |
arm_3R | 20898042..20898319 | 20..294 | 98 | -> | Minus |
BO06555.5prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06555.5prime
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGAC
C
BO06555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-PB | 672 | CG11836-RB | 1..669 | 17..685 | 3345 | 100 | Plus |
CG11836-PA | 672 | CG11836-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 1102 | CG11836-RF | 317..985 | 17..685 | 3345 | 100 | Plus |
CG11836-RE | 1076 | CG11836-RE | 291..959 | 17..685 | 3345 | 100 | Plus |
CG11836-RI | 1101 | CG11836-RI | 316..984 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25071810..25072127 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 25072318..25072595 | 408..685 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 25072185..25072266 | 331..412 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:31:08 has no hits.
BO06555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:52:59 Download gff for
BO06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:54 Download gff for
BO06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:47 Download gff for
BO06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..984 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:32 Download gff for
BO06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..984 | 17..685 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:32 Download gff for
BO06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25071810..25072125 | 17..332 | 100 | -> | Plus |
3R | 25072187..25072263 | 333..409 | 100 | -> | Plus |
3R | 25072320..25072597 | 410..684 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:47 Download gff for
BO06555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20897532..20897847 | 17..332 | 100 | -> | Plus |
arm_3R | 20897909..20897985 | 333..409 | 100 | -> | Plus |
arm_3R | 20898042..20898319 | 410..684 | 98 | -> | Plus |
BO06555.complete Sequence
703 bp (703 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630445
> BO06555.complete
GAAGTTATCAGTCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATT
GCGGAGGATCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGC
GTGAAGAAACTGCGAAAATCCAAAATCAGAGTCATATTCGGCGACCACGA
TCAAGAGATCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTG
TGATAAAGCACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCC
CTGTTGCGACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAAT
CTGCCTACCGCGCTATAATTACGACCCCGCAGGTCGCATTGGAACGGTTG
TCGGCTGGGGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAAT
CAAGTTAAGGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATA
CAAAAGTACTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCA
TGGACTCATGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGC
GTTAAGTATTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCG
CGAAGGATATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGA
TTAAGTCTAATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGAC
CAT
BO06555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 672 | CG11836-PF | 1..669 | 17..685 | 3345 | 100 | Plus |
CG11836-RE | 672 | CG11836-PE | 1..669 | 17..685 | 3345 | 100 | Plus |
CG11836-RI | 846 | CG11836-PI | 175..843 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-RF | 1102 | CG11836-RF | 317..985 | 17..685 | 3345 | 100 | Plus |
CG11836-RE | 1076 | CG11836-RE | 291..959 | 17..685 | 3345 | 100 | Plus |
CG11836-RI | 1101 | CG11836-RI | 316..984 | 17..685 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25071810..25072127 | 17..334 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 25072318..25072595 | 408..685 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 25072185..25072266 | 331..412 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:19:15 has no hits.
BO06555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:55 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RC | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:45 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RC | 305..973 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:54 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..984 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:55 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RC | 305..973 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:22 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11836-RI | 316..984 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:22 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25072320..25072595 | 410..687 | 99 | | Plus |
3R | 25071810..25072125 | 17..332 | 100 | -> | Plus |
3R | 25072187..25072263 | 333..409 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:54 Download gff for
BO06555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20897532..20897847 | 17..332 | 100 | -> | Plus |
arm_3R | 20897909..20897985 | 333..409 | 100 | -> | Plus |
arm_3R | 20898042..20898317 | 410..687 | 99 | | Plus |
BO06555.pep Sequence
Translation from 16 to 703
> BO06555.pep
MARIVYDGKFHCGGSLLTKDYVLSAAHCVKKLRKSKIRVIFGDHDQEITS
ESQAIQRAVTAVIKHKSFDPDTYNNDIALLRLRKPISFSKIIKPICLPRY
NYDPAGRIGTVVGWGRTSEGGELPSIVNQVKVPIMSITECRNQRYKSTRI
TSSMLCAGRPSMDSCQGDSGGPLLLSNGVKYFIVGIVSWGVGCGREGYPG
VYSRVSKFIPWIKSNLENTCLCSASFLDH
BO06555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11836-PF | 223 | CG11836-PF | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PE | 223 | CG11836-PE | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PG | 223 | CG11836-PG | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PC | 223 | CG11836-PC | 1..223 | 1..223 | 1182 | 100 | Plus |
CG11836-PA | 223 | CG11836-PA | 1..223 | 1..223 | 1182 | 100 | Plus |