Clone BO06562 Report

Search the DGRC for BO06562

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG6673-RB
Protein status:BO06562.pep: validated full length
Sequenced Size:784

Clone Sequence Records

BO06562.3prime Sequence

782 bp (759 high quality bases) assembled on 2005-12-03

> BO06562.3prime
ATGGTCTAGAAAGCTTGCCAAGGGCTGGAAGGCTACATCGTAGTCCGGTT
TGTTCTCATGGCGGGTCTTCATGAACTTCGCATGGATTCGGGCATCCAAA
GCGGTGGCCTTGACAGCCTCATCCTGAGCCACCAGATCCCTCCACTTCAA
CAAATTCTGATAGCGTGTCTTGTCCAACTCGTAGGGTTCATCCAGAGTGT
ACTTGAGGGCCGGGAATCGCTCGAACCAGGGCCAAATCATGTAGTCAGCA
ATGCCGATCTTGTTGCCTCCAAAGTATGGTGTTCCGCGCTTGGTGATCTC
CTGCTCGAAGACATCCAGAGCGGTCTCAAAGTTCTTGATGGCATCAGCGG
GTGGATTCTTGGTGAACAGCACGGGGTAAATGGCGCTGACAGCGGGCGAC
AGGCGTTCGATGAGAATCCTGTCTAGCGCCTTTTGCAATGGATCCTTGGG
GAAAAGGGAGCCCTCGCCCGGATACTGTTCATCCAAGTACTCGGCAATGA
CCAGGGACTCCACCAAAGCCGGTTGTCCAGGCAGATTTGGCAACTGGATA
GCCGGCACCTTGCCCAATGGACTGTAGTCGATGTACCACTCTGGTTTCTC
GCTAAGATCAATGTAAACCGTGTGATGTGGAATCTTTTTGGCGGCCAAAA
CCAAACCGGCACGCTGCGAGTACGGGCAGAATCTCATCGAATAGTAACGC
AGGACTCCATCCTCGGGGATCTCCGGTTTGGGCGAACCCCTCTTGAAGTG
CTTTTGCGGCAGGGCCATGTCGACTGATAACT

BO06562.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6673-PB 753 CG6673-RB 1..750 768..19 3750 100 Minus
CG6673-PA 756 CG6673-RA 1..35 768..734 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 912 CG6673-RB 71..820 768..19 3750 100 Minus
GstO2-RA 932 CG6673-RA 71..469 768..367 280 72.3 Minus
GstO3-RA 881 CG6776-RA 495..599 325..221 210 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8522503..8523222 19..738 3600 100 Plus
3L 28110227 3L 8519909..8520013 325..221 195 79 Minus
Blast to na_te.dros performed on 2015-02-11 22:59:32 has no hits.

BO06562.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:11 Download gff for BO06562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 15..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:07 Download gff for BO06562.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 15..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:27 Download gff for BO06562.3prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..825 14..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:04 Download gff for BO06562.3prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..825 14..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:04 Download gff for BO06562.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8522498..8523221 14..737 99 <- Plus
3L 8523401..8523431 738..768 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:27 Download gff for BO06562.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8515598..8516321 14..737 99 <- Plus
arm_3L 8516501..8516531 738..768 100   Plus

BO06562.5prime Sequence

782 bp (781 high quality bases) assembled on 2005-12-03

> BO06562.5prime
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGGCAAGCTTTCTAGACC

BO06562.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6673-PB 753 CG6673-RB 1..750 17..766 3750 100 Plus
CG6673-PA 756 CG6673-RA 1..35 17..51 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 912 CG6673-RB 71..820 17..766 3750 100 Plus
GstO2-RA 932 CG6673-RA 71..469 17..418 280 72.3 Plus
GstO3-RA 881 CG6776-RA 495..599 460..564 210 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8522503..8523222 766..47 3600 100 Minus
3L 28110227 3L 8519909..8520013 460..564 195 79 Plus
Blast to na_te.dros performed on 2015-02-10 15:56:51 has no hits.

BO06562.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:12 Download gff for BO06562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:09 Download gff for BO06562.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:01:06 Download gff for BO06562.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..825 17..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:01 Download gff for BO06562.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..825 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:01 Download gff for BO06562.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8522498..8523221 48..771 99 <- Minus
3L 8523401..8523431 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:01:06 Download gff for BO06562.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8515598..8516321 48..771 99 <- Minus
arm_3L 8516501..8516531 17..47 100   Minus

BO06562.complete Sequence

784 bp (784 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630446

> BO06562.complete
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGGCAAGCTTTCTAGACCAT

BO06562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 753 CG6673-PB 1..750 17..766 3750 100 Plus
GstO2-RA 756 CG6673-PA 1..215 17..231 265 74.9 Plus
GstO3-RA 726 CG6776-PA 426..530 460..564 195 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 912 CG6673-RB 71..820 17..766 3750 100 Plus
GstO2-RA 932 CG6673-RA 71..285 17..231 265 74.9 Plus
GstO3-RA 881 CG6776-RA 495..599 460..564 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8522503..8523222 766..47 3600 100 Minus
3L 28110227 3L 8519909..8520013 460..564 195 79 Plus
Blast to na_te.dros performed on 2014-11-28 00:05:52 has no hits.

BO06562.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:28 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RB 1..753 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:48 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RB 70..824 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:29 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..820 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:28 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RB 70..824 17..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:25 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..820 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:25 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8522501..8523221 48..768 99 <- Minus
3L 8523401..8523431 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:29 Download gff for BO06562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8515601..8516321 48..768 99 <- Minus
arm_3L 8516501..8516531 17..47 100   Minus

BO06562.pep Sequence

Translation from 16 to 784

> BO06562.pep
MALPQKHFKRGSPKPEIPEDGVLRYYSMRFCPYSQRAGLVLAAKKIPHHT
VYIDLSEKPEWYIDYSPLGKVPAIQLPNLPGQPALVESLVIAEYLDEQYP
GEGSLFPKDPLQKALDRILIERLSPAVSAIYPVLFTKNPPADAIKNFETA
LDVFEQEITKRGTPYFGGNKIGIADYMIWPWFERFPALKYTLDEPYELDK
TRYQNLLKWRDLVAQDEAVKATALDARIHAKFMKTRHENKPDYDVAFQPL
ASFLDH

BO06562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-PB 250 CG6673-PB 1..250 1..250 1333 100 Plus
GstO2-PA 251 CG6673-PA 1..248 1..248 890 66.3 Plus
GstO3-PA 241 CG6776-PA 5..239 6..245 669 51.7 Plus
GstO1-PA 254 CG6662-PA 5..245 6..247 637 48.8 Plus
se-PA 243 CG6781-PA 5..238 6..245 620 46.7 Plus