Clone Sequence Records
BO06562.3prime Sequence
782 bp (759 high quality bases) assembled on 2005-12-03
> BO06562.3prime
ATGGTCTAGAAAGCTTGCCAAGGGCTGGAAGGCTACATCGTAGTCCGGTT
TGTTCTCATGGCGGGTCTTCATGAACTTCGCATGGATTCGGGCATCCAAA
GCGGTGGCCTTGACAGCCTCATCCTGAGCCACCAGATCCCTCCACTTCAA
CAAATTCTGATAGCGTGTCTTGTCCAACTCGTAGGGTTCATCCAGAGTGT
ACTTGAGGGCCGGGAATCGCTCGAACCAGGGCCAAATCATGTAGTCAGCA
ATGCCGATCTTGTTGCCTCCAAAGTATGGTGTTCCGCGCTTGGTGATCTC
CTGCTCGAAGACATCCAGAGCGGTCTCAAAGTTCTTGATGGCATCAGCGG
GTGGATTCTTGGTGAACAGCACGGGGTAAATGGCGCTGACAGCGGGCGAC
AGGCGTTCGATGAGAATCCTGTCTAGCGCCTTTTGCAATGGATCCTTGGG
GAAAAGGGAGCCCTCGCCCGGATACTGTTCATCCAAGTACTCGGCAATGA
CCAGGGACTCCACCAAAGCCGGTTGTCCAGGCAGATTTGGCAACTGGATA
GCCGGCACCTTGCCCAATGGACTGTAGTCGATGTACCACTCTGGTTTCTC
GCTAAGATCAATGTAAACCGTGTGATGTGGAATCTTTTTGGCGGCCAAAA
CCAAACCGGCACGCTGCGAGTACGGGCAGAATCTCATCGAATAGTAACGC
AGGACTCCATCCTCGGGGATCTCCGGTTTGGGCGAACCCCTCTTGAAGTG
CTTTTGCGGCAGGGCCATGTCGACTGATAACT
BO06562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6673-PB | 753 | CG6673-RB | 1..750 | 768..19 | 3750 | 100 | Minus |
CG6673-PA | 756 | CG6673-RA | 1..35 | 768..734 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 912 | CG6673-RB | 71..820 | 768..19 | 3750 | 100 | Minus |
GstO2-RA | 932 | CG6673-RA | 71..469 | 768..367 | 280 | 72.3 | Minus |
GstO3-RA | 881 | CG6776-RA | 495..599 | 325..221 | 210 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8522503..8523222 | 19..738 | 3600 | 100 | Plus |
3L | 28110227 | 3L | 8519909..8520013 | 325..221 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:59:32 has no hits.
BO06562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:11 Download gff for
BO06562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:07 Download gff for
BO06562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:27 Download gff for
BO06562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..825 | 14..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:04 Download gff for
BO06562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..825 | 14..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:04 Download gff for
BO06562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8522498..8523221 | 14..737 | 99 | <- | Plus |
3L | 8523401..8523431 | 738..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:27 Download gff for
BO06562.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8515598..8516321 | 14..737 | 99 | <- | Plus |
arm_3L | 8516501..8516531 | 738..768 | 100 | | Plus |
BO06562.5prime Sequence
782 bp (781 high quality bases) assembled on 2005-12-03
> BO06562.5prime
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGGCAAGCTTTCTAGACC
BO06562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6673-PB | 753 | CG6673-RB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG6673-PA | 756 | CG6673-RA | 1..35 | 17..51 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 912 | CG6673-RB | 71..820 | 17..766 | 3750 | 100 | Plus |
GstO2-RA | 932 | CG6673-RA | 71..469 | 17..418 | 280 | 72.3 | Plus |
GstO3-RA | 881 | CG6776-RA | 495..599 | 460..564 | 210 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8522503..8523222 | 766..47 | 3600 | 100 | Minus |
3L | 28110227 | 3L | 8519909..8520013 | 460..564 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:56:51 has no hits.
BO06562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:12 Download gff for
BO06562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:09 Download gff for
BO06562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:01:06 Download gff for
BO06562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..825 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:01 Download gff for
BO06562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..825 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:01 Download gff for
BO06562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8522498..8523221 | 48..771 | 99 | <- | Minus |
3L | 8523401..8523431 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:01:06 Download gff for
BO06562.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8515598..8516321 | 48..771 | 99 | <- | Minus |
arm_3L | 8516501..8516531 | 17..47 | 100 | | Minus |
BO06562.complete Sequence
784 bp (784 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630446
> BO06562.complete
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGGCAAGCTTTCTAGACCAT
BO06562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 753 | CG6673-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
GstO2-RA | 756 | CG6673-PA | 1..215 | 17..231 | 265 | 74.9 | Plus |
GstO3-RA | 726 | CG6776-PA | 426..530 | 460..564 | 195 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 912 | CG6673-RB | 71..820 | 17..766 | 3750 | 100 | Plus |
GstO2-RA | 932 | CG6673-RA | 71..285 | 17..231 | 265 | 74.9 | Plus |
GstO3-RA | 881 | CG6776-RA | 495..599 | 460..564 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8522503..8523222 | 766..47 | 3600 | 100 | Minus |
3L | 28110227 | 3L | 8519909..8520013 | 460..564 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:05:52 has no hits.
BO06562.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:28 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-RB | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:48 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-RB | 70..824 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:29 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..820 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:28 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-RB | 70..824 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:25 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..820 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:25 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8522501..8523221 | 48..768 | 99 | <- | Minus |
3L | 8523401..8523431 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:29 Download gff for
BO06562.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8515601..8516321 | 48..768 | 99 | <- | Minus |
arm_3L | 8516501..8516531 | 17..47 | 100 | | Minus |
BO06562.pep Sequence
Translation from 16 to 784
> BO06562.pep
MALPQKHFKRGSPKPEIPEDGVLRYYSMRFCPYSQRAGLVLAAKKIPHHT
VYIDLSEKPEWYIDYSPLGKVPAIQLPNLPGQPALVESLVIAEYLDEQYP
GEGSLFPKDPLQKALDRILIERLSPAVSAIYPVLFTKNPPADAIKNFETA
LDVFEQEITKRGTPYFGGNKIGIADYMIWPWFERFPALKYTLDEPYELDK
TRYQNLLKWRDLVAQDEAVKATALDARIHAKFMKTRHENKPDYDVAFQPL
ASFLDH
BO06562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-PB | 250 | CG6673-PB | 1..250 | 1..250 | 1333 | 100 | Plus |
GstO2-PA | 251 | CG6673-PA | 1..248 | 1..248 | 890 | 66.3 | Plus |
GstO3-PA | 241 | CG6776-PA | 5..239 | 6..245 | 669 | 51.7 | Plus |
GstO1-PA | 254 | CG6662-PA | 5..245 | 6..247 | 637 | 48.8 | Plus |
se-PA | 243 | CG6781-PA | 5..238 | 6..245 | 620 | 46.7 | Plus |