Clone Sequence Records
BO06564.3prime Sequence
913 bp (743 high quality bases) assembled on 2005-12-03
> BO06564.3prime
ATGGTCTAGAAAGCTTGCAATCCAACTGCGTCCCAGACTGCCAGACCTGC
GTTTGGTGGACTTTTCTCCCAGAGAACTGGCTGTCTGGTCCTTGCGCCCC
ATCACAGGCGAGCTGCCCGATCCAATATTACGGATTAACTGCTTAAGGCT
GCGCGCCTGTGCGTCGCTGGCCTGGCTCACGCTGTTCGCCTCGGAAGCAA
TGATGCAGAAATCATCGACTATGTGTCCGGGAGGACTGATGTCGAAAGGC
AGAATGTCGCTCAGGCTCTGCTGCTGGCGATACACGCTGCGTCTGCGGGC
TCCATTGTCGACCCCACCGCCAAGTGAACTTCCGCTTGCGGCCGCAGTTC
CTGATTGTTGCTGGGTCATCTGGTTCAGCTCCTGCTGCAAGTTGAGTACC
CGAGTGCGTAGCCCAGCGTTGTCTTCGCTGAGACGCTGCATGTGGGCCGC
TTCCTGCTCCGCCCGCACGAATGTGGGCTGCGGCAGGCACTGGTATACGG
TGGTCAGGAAGTTGCGCAGCGACAGAAGCAACGTATCCTGCCATTGCTTG
GTGAAGAACAGGGCAAAAGTGGGCGACTCCTCGGCATTCTTGCAAAACGG
AAAGTAGAACCAATCCTTCCACTCGCTTTGCTGCTGCAGATCGCCCGCCA
ACTTGTTAAAGAACTCGGACACCTTCTCAGGTCGATTGCTGCTGTAGGCG
GTCACCAGGTAGTATTTTAGGAGGCTGTTTTCCAGTTTCTTGACAGNCAC
GGCATACGTATGCTCCAGCTTGGAAAATATGTTGTTGTCCAGGTGAAACC
ACAAACTCCTGAGAGCCCTGANGTCAGACGCTTGCACAGCATTATTGAAT
TGCTCCAGAATTCGTTCCGCACGGAAGTGCTGGTCCTTCTCAGTGCGCTG
CTCCAAGTCGAGG
BO06564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-PA | 975 | CG6005-RA | 174..972 | 817..19 | 3951 | 99.7 | Minus |
CG6005-PA | 975 | CG6005-RA | 78..168 | 913..823 | 455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 1456 | CG6005-RB | 164..1058 | 913..19 | 4393 | 99.4 | Minus |
CG6005-RA | 1313 | CG6005-RA | 164..1058 | 913..19 | 4393 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19022856..19023442 | 19..605 | 2935 | 100 | Plus |
3R | 32079331 | 3R | 19023703..19023867 | 749..913 | 769 | 97.6 | Plus |
3R | 32079331 | 3R | 19023504..19023644 | 606..746 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:57:16 has no hits.
BO06564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:15 Download gff for
BO06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 78..975 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:13 Download gff for
BO06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 78..975 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:19 Download gff for
BO06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 156..1050 | 19..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:30 Download gff for
BO06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 164..1058 | 19..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:30 Download gff for
BO06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19022856..19023442 | 19..605 | 100 | <- | Plus |
3R | 19023504..19023644 | 606..746 | 100 | <- | Plus |
3R | 19023701..19023867 | 747..913 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:19 Download gff for
BO06564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14848578..14849164 | 19..605 | 100 | <- | Plus |
arm_3R | 14849226..14849366 | 606..746 | 100 | <- | Plus |
arm_3R | 14849423..14849589 | 747..913 | 97 | | Plus |
BO06564.5prime Sequence
917 bp (846 high quality bases) assembled on 2005-12-03
> BO06564.5prime
GAAGTTATCAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTA
GGGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGAC
TTGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCT
GGAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGA
GTTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACG
TATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCT
GGTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTA
ACAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTC
TACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTT
CTTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCC
TGACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAG
CAGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACG
CACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAAC
AATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGAC
AATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGA
CATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCT
GCATCATTGCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAG
GCGCGCAGCCTTAAGCAGTTAATCCCGTATATTGGATCGGGCAGCTCGCC
TGTGATGGGGCGCAGGG
BO06564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-PA | 975 | CG6005-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
CG6005-PA | 975 | CG6005-RA | 863..898 | 879..914 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 1456 | CG6005-RB | 87..984 | 17..914 | 4445 | 99.8 | Plus |
CG6005-RA | 1313 | CG6005-RA | 87..984 | 17..914 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19022930..19023442 | 914..402 | 2520 | 99.4 | Minus |
3R | 32079331 | 3R | 19023701..19023944 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 19023504..19023645 | 401..260 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:02:55 has no hits.
BO06564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:16 Download gff for
BO06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:15 Download gff for
BO06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:10 Download gff for
BO06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 71..979 | 7..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:43:12 Download gff for
BO06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 79..987 | 7..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:43:12 Download gff for
BO06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19022927..19023442 | 402..917 | 99 | <- | Minus |
3R | 19023504..19023644 | 261..401 | 100 | <- | Minus |
3R | 19023701..19023952 | 7..260 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:10 Download gff for
BO06564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14848649..14849164 | 402..917 | 99 | <- | Minus |
arm_3R | 14849226..14849366 | 261..401 | 100 | <- | Minus |
arm_3R | 14849423..14849674 | 7..260 | 98 | | Minus |
BO06564.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630447
> BO06564.complete
GAAGTTATCAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTA
GGGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGAC
TTGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCT
GGAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGA
GTTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACG
TATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCT
GGTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTA
ACAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTC
TACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTT
CTTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCC
TGACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAG
CAGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACG
CACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAAC
AATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGAC
AATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGA
CATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCT
GCATCATTGCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAG
GCGCGCAGCCTTAAGCAGTTAATCCGTAATATTGGATCGGGCAGCTCGCC
TGTGATGGGGCGCAAGGACCAGACAGCCAGTTCTCTGGGAGAAAAGTCCA
CCAAACGCAGGTCTGGCAGTCTGGGACGCAGTTGGATTGCAAGCTTTCTA
GACCAT
BO06564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 975 | CG6005-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
CG6005-RA | 975 | CG6005-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 1456 | CG6005-RB | 87..1058 | 17..988 | 4860 | 100 | Plus |
CG6005-RA | 1313 | CG6005-RA | 87..1058 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19022856..19023442 | 988..402 | 2935 | 100 | Minus |
3R | 32079331 | 3R | 19023701..19023944 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 19023504..19023645 | 401..260 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:35:32 has no hits.
BO06564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:38 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 1..975 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:22 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 71..1050 | 7..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:03 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 79..1050 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:38 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 71..1050 | 7..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:19 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 87..1058 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:19 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19022854..19023442 | 402..990 | 99 | <- | Minus |
3R | 19023504..19023644 | 261..401 | 100 | <- | Minus |
3R | 19023701..19023944 | 17..260 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:03 Download gff for
BO06564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14849423..14849666 | 17..260 | 100 | | Minus |
arm_3R | 14848576..14849164 | 402..990 | 99 | <- | Minus |
arm_3R | 14849226..14849366 | 261..401 | 100 | <- | Minus |
BO06564.pep Sequence
Translation from 16 to 1006
> BO06564.pep
MAQVAFLDNLLREYLVFRGFSSTLKALDLEQRTEKDQHFRAERILEQFNN
AVQASDLQALRSLWFHLDNNIFSKLEHTYAVAVKKLENSLLKYYLVTAYS
SNRPEKVSEFFNKLAGDLQQQSEWKDWFYFPFCKNAEESPTFALFFTKQW
QDTLLLSLRNFLTTVYQCLPQPTFVRAEQEAAHMQRLSEDNAGLRTRVLN
LQQELNQMTQQQSGTAAASGSSLGGGVDNGARRRSVYRQQQSLSDILPFD
ISPPGHIVDDFCIIASEANSVSQASDAQARSLKQLIRNIGSGSSPVMGRK
DQTASSLGEKSTKRRSGSLGRSWIASFLDH
BO06564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-PB | 324 | CG6005-PB | 1..324 | 1..324 | 1653 | 100 | Plus |
CG6005-PA | 324 | CG6005-PA | 1..324 | 1..324 | 1653 | 100 | Plus |