Clone BO06564 Report

Search the DGRC for BO06564

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG6005-RA
Protein status:BO06564.pep: validated full length
Sequenced Size:1006

Clone Sequence Records

BO06564.3prime Sequence

913 bp (743 high quality bases) assembled on 2005-12-03

> BO06564.3prime
ATGGTCTAGAAAGCTTGCAATCCAACTGCGTCCCAGACTGCCAGACCTGC
GTTTGGTGGACTTTTCTCCCAGAGAACTGGCTGTCTGGTCCTTGCGCCCC
ATCACAGGCGAGCTGCCCGATCCAATATTACGGATTAACTGCTTAAGGCT
GCGCGCCTGTGCGTCGCTGGCCTGGCTCACGCTGTTCGCCTCGGAAGCAA
TGATGCAGAAATCATCGACTATGTGTCCGGGAGGACTGATGTCGAAAGGC
AGAATGTCGCTCAGGCTCTGCTGCTGGCGATACACGCTGCGTCTGCGGGC
TCCATTGTCGACCCCACCGCCAAGTGAACTTCCGCTTGCGGCCGCAGTTC
CTGATTGTTGCTGGGTCATCTGGTTCAGCTCCTGCTGCAAGTTGAGTACC
CGAGTGCGTAGCCCAGCGTTGTCTTCGCTGAGACGCTGCATGTGGGCCGC
TTCCTGCTCCGCCCGCACGAATGTGGGCTGCGGCAGGCACTGGTATACGG
TGGTCAGGAAGTTGCGCAGCGACAGAAGCAACGTATCCTGCCATTGCTTG
GTGAAGAACAGGGCAAAAGTGGGCGACTCCTCGGCATTCTTGCAAAACGG
AAAGTAGAACCAATCCTTCCACTCGCTTTGCTGCTGCAGATCGCCCGCCA
ACTTGTTAAAGAACTCGGACACCTTCTCAGGTCGATTGCTGCTGTAGGCG
GTCACCAGGTAGTATTTTAGGAGGCTGTTTTCCAGTTTCTTGACAGNCAC
GGCATACGTATGCTCCAGCTTGGAAAATATGTTGTTGTCCAGGTGAAACC
ACAAACTCCTGAGAGCCCTGANGTCAGACGCTTGCACAGCATTATTGAAT
TGCTCCAGAATTCGTTCCGCACGGAAGTGCTGGTCCTTCTCAGTGCGCTG
CTCCAAGTCGAGG

BO06564.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-PA 975 CG6005-RA 174..972 817..19 3951 99.7 Minus
CG6005-PA 975 CG6005-RA 78..168 913..823 455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-RB 1456 CG6005-RB 164..1058 913..19 4393 99.4 Minus
CG6005-RA 1313 CG6005-RA 164..1058 913..19 4393 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19022856..19023442 19..605 2935 100 Plus
3R 32079331 3R 19023703..19023867 749..913 769 97.6 Plus
3R 32079331 3R 19023504..19023644 606..746 705 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:57:16 has no hits.

BO06564.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:15 Download gff for BO06564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-PA 78..975 18..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:13 Download gff for BO06564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-PA 78..975 18..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:41:19 Download gff for BO06564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 156..1050 19..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:30 Download gff for BO06564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 164..1058 19..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:30 Download gff for BO06564.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19022856..19023442 19..605 100 <- Plus
3R 19023504..19023644 606..746 100 <- Plus
3R 19023701..19023867 747..913 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:41:19 Download gff for BO06564.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14848578..14849164 19..605 100 <- Plus
arm_3R 14849226..14849366 606..746 100 <- Plus
arm_3R 14849423..14849589 747..913 97   Plus

BO06564.5prime Sequence

917 bp (846 high quality bases) assembled on 2005-12-03

> BO06564.5prime
GAAGTTATCAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTA
GGGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGAC
TTGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCT
GGAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGA
GTTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACG
TATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCT
GGTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTA
ACAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTC
TACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTT
CTTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCC
TGACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAG
CAGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACG
CACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAAC
AATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGAC
AATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGA
CATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCT
GCATCATTGCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAG
GCGCGCAGCCTTAAGCAGTTAATCCCGTATATTGGATCGGGCAGCTCGCC
TGTGATGGGGCGCAGGG

BO06564.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-PA 975 CG6005-RA 1..859 17..875 4295 100 Plus
CG6005-PA 975 CG6005-RA 863..898 879..914 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-RB 1456 CG6005-RB 87..984 17..914 4445 99.8 Plus
CG6005-RA 1313 CG6005-RA 87..984 17..914 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19022930..19023442 914..402 2520 99.4 Minus
3R 32079331 3R 19023701..19023944 260..17 1220 100 Minus
3R 32079331 3R 19023504..19023645 401..260 710 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:02:55 has no hits.

BO06564.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:16 Download gff for BO06564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-PA 1..901 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:15 Download gff for BO06564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-PA 1..901 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:10 Download gff for BO06564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 71..979 7..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:43:12 Download gff for BO06564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 79..987 7..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:43:12 Download gff for BO06564.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19022927..19023442 402..917 99 <- Minus
3R 19023504..19023644 261..401 100 <- Minus
3R 19023701..19023952 7..260 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:10 Download gff for BO06564.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14848649..14849164 402..917 99 <- Minus
arm_3R 14849226..14849366 261..401 100 <- Minus
arm_3R 14849423..14849674 7..260 98   Minus

BO06564.complete Sequence

1006 bp (1006 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630447

> BO06564.complete
GAAGTTATCAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTA
GGGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGAC
TTGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCT
GGAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGA
GTTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACG
TATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCT
GGTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTA
ACAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTC
TACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTT
CTTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCC
TGACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAG
CAGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACG
CACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAAC
AATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGAC
AATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGA
CATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCT
GCATCATTGCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAG
GCGCGCAGCCTTAAGCAGTTAATCCGTAATATTGGATCGGGCAGCTCGCC
TGTGATGGGGCGCAAGGACCAGACAGCCAGTTCTCTGGGAGAAAAGTCCA
CCAAACGCAGGTCTGGCAGTCTGGGACGCAGTTGGATTGCAAGCTTTCTA
GACCAT

BO06564.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-RB 975 CG6005-PB 1..972 17..988 4860 100 Plus
CG6005-RA 975 CG6005-PA 1..972 17..988 4860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-RB 1456 CG6005-RB 87..1058 17..988 4860 100 Plus
CG6005-RA 1313 CG6005-RA 87..1058 17..988 4860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19022856..19023442 988..402 2935 100 Minus
3R 32079331 3R 19023701..19023944 260..17 1220 100 Minus
3R 32079331 3R 19023504..19023645 401..260 710 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:35:32 has no hits.

BO06564.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:38 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 1..975 17..989 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:22 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 71..1050 7..988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:03 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 79..1050 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:38 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 71..1050 7..988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:19 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
CG6005-RA 87..1058 17..990 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:19 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19022854..19023442 402..990 99 <- Minus
3R 19023504..19023644 261..401 100 <- Minus
3R 19023701..19023944 17..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:03 Download gff for BO06564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14849423..14849666 17..260 100   Minus
arm_3R 14848576..14849164 402..990 99 <- Minus
arm_3R 14849226..14849366 261..401 100 <- Minus

BO06564.pep Sequence

Translation from 16 to 1006

> BO06564.pep
MAQVAFLDNLLREYLVFRGFSSTLKALDLEQRTEKDQHFRAERILEQFNN
AVQASDLQALRSLWFHLDNNIFSKLEHTYAVAVKKLENSLLKYYLVTAYS
SNRPEKVSEFFNKLAGDLQQQSEWKDWFYFPFCKNAEESPTFALFFTKQW
QDTLLLSLRNFLTTVYQCLPQPTFVRAEQEAAHMQRLSEDNAGLRTRVLN
LQQELNQMTQQQSGTAAASGSSLGGGVDNGARRRSVYRQQQSLSDILPFD
ISPPGHIVDDFCIIASEANSVSQASDAQARSLKQLIRNIGSGSSPVMGRK
DQTASSLGEKSTKRRSGSLGRSWIASFLDH

BO06564.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6005-PB 324 CG6005-PB 1..324 1..324 1653 100 Plus
CG6005-PA 324 CG6005-PA 1..324 1..324 1653 100 Plus