Clone Sequence Records
BO06566.3prime Sequence
524 bp (523 high quality bases) assembled on 2005-12-03
> BO06566.3prime
ATGGTCTAGAAAGCTTGCCTTTTCCTTGTACGTAATGATTCCCTTCTCGA
TGAGATCCGGAATCTCCACGGCCAGCCAGGGAGCAAGACCCAGAGCCATA
GCGTGGGCGATCCCAAACTTGGGAACATTGCGTGCCCACAGTGGCTTAAA
GTGATCCGTCAGACAGATCTTGCCACCACGGTACATCTTCGCTGTCTTGC
CGTCAAGTTCTGGCAGGGCAATCTCGGGCGCGGTGGTTGGGTACGTCACT
GGAATGTCGAACTCCACGTCGAACTCGTACTTTAACAGGTTGTGCATGTA
CCAACACTTTCCGAACCACTTGGTGCCCTCCTTGTTGGATTCCAGACGGA
ACCAGTCGCTGCCGGACTGTTTGTTGTTCTCCACATACTTAATTAGTGCC
TGGTACTCCTCCTTGAGCCGCTGCACCCACACATCCTTTTCGCGCGGACC
AGCGCGAATCTGCAGCAGCGGAATGTTGCTCAACGTTTTTCGAGTGCTGT
CGTCCACCATGTCGACTGATAACT
BO06566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-PA | 495 | CG8386-RA | 1..492 | 510..19 | 2460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 656 | CG8386-RA | 97..592 | 514..19 | 2465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16007087..16007388 | 88..389 | 1510 | 100 | Plus |
2R | 25286936 | 2R | 16007445..16007571 | 388..514 | 620 | 99.2 | Plus |
2R | 25286936 | 2R | 16006957..16007025 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:53:36 has no hits.
BO06566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:19 Download gff for
BO06566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 18..510 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:19 Download gff for
BO06566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 18..510 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:44 Download gff for
BO06566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..601 | 8..522 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:54 Download gff for
BO06566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..601 | 8..522 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:54 Download gff for
BO06566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16006948..16007025 | 8..87 | 93 | <- | Plus |
2R | 16007087..16007386 | 88..387 | 100 | <- | Plus |
2R | 16007445..16007578 | 388..522 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:44 Download gff for
BO06566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11894453..11894530 | 8..87 | 93 | <- | Plus |
arm_2R | 11894592..11894891 | 88..387 | 100 | <- | Plus |
arm_2R | 11894950..11895083 | 388..522 | 96 | | Plus |
BO06566.5prime Sequence
524 bp (523 high quality bases) assembled on 2005-12-03
> BO06566.5prime
GAAGTTATCAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCA
ACATTCCGCTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGG
GTGCAGCGGCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAA
CAACAAACAGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGG
GCACCAAGTGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTAC
GAGTTCGACGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCC
CGAGATTGCCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTG
GTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAAT
GTTCCCAAGTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTG
GCTGGCCGTGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACA
AGGAAAAGGCAAGCTTTCTAGACC
BO06566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-PA | 495 | CG8386-RA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 656 | CG8386-RA | 97..592 | 13..508 | 2465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16007087..16007388 | 439..138 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 16007445..16007571 | 139..13 | 620 | 99.2 | Minus |
2R | 25286936 | 2R | 16006957..16007025 | 508..440 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:03:06 has no hits.
BO06566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:20 Download gff for
BO06566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:20 Download gff for
BO06566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-PA | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:12 Download gff for
BO06566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..601 | 5..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:45:58 Download gff for
BO06566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 88..601 | 5..519 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:45:58 Download gff for
BO06566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16007445..16007578 | 5..139 | 96 | | Minus |
2R | 16007087..16007386 | 140..439 | 100 | <- | Minus |
2R | 16006948..16007025 | 440..519 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:12 Download gff for
BO06566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11894453..11894530 | 440..519 | 93 | <- | Minus |
arm_2R | 11894592..11894891 | 140..439 | 100 | <- | Minus |
arm_2R | 11894950..11895083 | 5..139 | 96 | | Minus |
BO06566.complete Sequence
526 bp (526 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638640
> BO06566.complete
GAAGTTATCAGTCGACATGGTGGACGACAGCACTCGAAAAACGTTGAGCA
ACATTCCGCTGCTGCAGATTCGCGCTGGTCCGCGCGAAAAGGATGTGTGG
GTGCAGCGGCTCAAGGAGGAGTACCAGGCACTAATTAAGTATGTGGAGAA
CAACAAACAGTCCGGCAGCGACTGGTTCCGTCTGGAATCCAACAAGGAGG
GCACCAAGTGGTTCGGAAAGTGTTGGTACATGCACAACCTGTTAAAGTAC
GAGTTCGACGTGGAGTTCGACATTCCAGTGACGTACCCAACCACCGCGCC
CGAGATTGCCCTGCCAGAACTTGACGGCAAGACAGCGAAGATGTACCGTG
GTGGCAAGATCTGTCTGACGGATCACTTTAAGCCACTGTGGGCACGCAAT
GTTCCCAAGTTTGGGATCGCCCACGCTATGGCTCTGGGTCTTGCTCCCTG
GCTGGCCGTGGAGATTCCGGATCTCATCGAGAAGGGAATCATTACGTACA
AGGAAAAGGCAAGCTTTCTAGACCAT
BO06566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 495 | CG8386-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-RA | 656 | CG8386-RA | 97..592 | 13..508 | 2465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16007087..16007388 | 439..138 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 16007445..16007571 | 139..13 | 620 | 99.2 | Minus |
2R | 25286936 | 2R | 16006957..16007025 | 508..440 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:34:28 has no hits.
BO06566.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:39 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 1..495 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:11 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 76..589 | 5..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:30 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 101..592 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:40 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 76..589 | 5..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:47 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8386-RA | 101..592 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:47 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16006953..16007025 | 440..510 | 97 | <- | Minus |
2R | 16007087..16007386 | 140..439 | 100 | <- | Minus |
2R | 16007445..16007567 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:30 Download gff for
BO06566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11894458..11894530 | 440..510 | 97 | <- | Minus |
arm_2R | 11894592..11894891 | 140..439 | 100 | <- | Minus |
arm_2R | 11894950..11895072 | 17..139 | 100 | | Minus |
BO06566.pep Sequence
Translation from 16 to 526
> BO06566.pep
MVDDSTRKTLSNIPLLQIRAGPREKDVWVQRLKEEYQALIKYVENNKQSG
SDWFRLESNKEGTKWFGKCWYMHNLLKYEFDVEFDIPVTYPTTAPEIALP
ELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMALGLAPWLAVEI
PDLIEKGIITYKEKASFLDH
BO06566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8386-PA | 164 | CG8386-PA | 1..164 | 1..164 | 887 | 100 | Plus |