Clone Sequence Records
BO06567.5prime Sequence
536 bp (535 high quality bases) assembled on 2005-12-03
> BO06567.5prime
GAAGTTATCAGTCGACATGCAGGATTTTCTGCCTTCGCTGGATGTTCTCT
TTCTTGGACTACCAGGCCACTACTCGGTAGCGCTGGTCACCCTTCTGCTG
TGCGTTTTGGTCGCCTTCTACTTCGCCAACATCTTCAAGGACAAAGGCGA
ACTGGAGGACGAGGGCCTGGGGGCCGACGAGCCGCGCGATGAGGAGGATT
CCGAGTCACGGACTCCGCAAGGGGAGGAAACCGACGATGACGAGGCCTAC
GAAGAGAACTCCACCGAAAGCGAAGTTGAGCTAATCGAGGAACAGCTGCC
CGAGCACAGCTACAACCACCTGATGGGCCAGCTCAAGGCCAAGAGGCTCC
AGCATAAGATGGAGAAGACCCTGACTCCCAGCCAAATCGAGGAGGAGCGC
CGAATAGAGCGCGAGCAGCTGGCGGCCATCTTTGAGCTCCTGCGCAAACA
GGAGGCGGAATTGAACCTCCAGGACCGAATAAGCGACCAGGATCTCAAGC
AGCAGGTGCGGCTCTATCGCGCAAGCTTTCTAGACC
BO06567.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-PA | 507 | CG7407-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-RA | 1049 | CG7407-RA | 67..575 | 12..520 | 2530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:14:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21823726..21824097 | 149..520 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 21823527..21823664 | 12..149 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:14:44 has no hits.
BO06567.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:22 Download gff for
BO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-PA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:23 Download gff for
BO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-PA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:59:49 Download gff for
BO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 67..580 | 12..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:30:01 Download gff for
BO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 67..580 | 12..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:30:01 Download gff for
BO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21823527..21823663 | 12..148 | 99 | -> | Plus |
| 3L | 21823726..21824101 | 149..525 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:59:49 Download gff for
BO06567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21816627..21816763 | 12..148 | 99 | -> | Plus |
| arm_3L | 21816826..21817201 | 149..525 | 99 | -> | Plus |
BO06567.3prime Sequence
536 bp (535 high quality bases) assembled on 2005-12-03
> BO06567.3prime
ATGGTCTAGAAAGCTTGCGCGATAGAGCCGCACCTGCTGCTTGAGATCCT
GGTCGCTTATTCGGTCCTGGAGGTTCAATTCCGCCTCCTGTTTGCGCAGG
AGCTCAAAGATGGCCGCCAGCTGCTCGCGCTCTATTCGGCGCTCCTCCTC
GATTTGGCTGGGAGTCAGGGTCTTCTCCATCTTATGCTGGAGCCTCTTGG
CCTTGAGCTGGCCCATCAGGTGGTTGTAGCTGTGCTCGGGCAGCTGTTCC
TCGATTAGCTCAACTTCGCTTTCGGTGGAGTTCTCTTCGTAGGCCTCGTC
ATCGTCGGTTTCCTCCCCTTGCGGAGTCCGTGACTCGGAATCCTCCTCAT
CGCGCGGCTCGTCGGCCCCCAGGCCCTCGTCCTCCAGTTCGCCTTTGTCC
TTGAAGATGTTGGCGAAGTAGAAGGCGACCAAAACGCACAGCAGAAGGGT
GACCAGCGCTACCGAGTAGTGGCCTGGTAGTCCAAGAAAGAGAACATCCA
GCGAAGGCAGAAAATCCTGCATGTCGACTGATAACT
BO06567.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-PA | 507 | CG7407-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-RA | 1049 | CG7407-RA | 67..575 | 527..19 | 2530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21823726..21824097 | 390..19 | 1860 | 100 | Minus |
| 3L | 28110227 | 3L | 21823527..21823664 | 527..390 | 675 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:03:16 has no hits.
BO06567.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:21 Download gff for
BO06567.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-PA | 1..507 | 16..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:22 Download gff for
BO06567.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-PA | 1..507 | 16..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:14 Download gff for
BO06567.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 67..580 | 14..527 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:46:37 Download gff for
BO06567.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 67..580 | 14..527 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:46:37 Download gff for
BO06567.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21823527..21823663 | 391..527 | 99 | -> | Minus |
| 3L | 21823726..21824101 | 14..390 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:14 Download gff for
BO06567.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21816627..21816763 | 391..527 | 99 | -> | Minus |
| arm_3L | 21816826..21817201 | 14..390 | 99 | -> | Minus |
BO06567.complete Sequence
538 bp (538 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630448
> BO06567.complete
GAAGTTATCAGTCGACATGCAGGATTTTCTGCCTTCGCTGGATGTTCTCT
TTCTTGGACTACCAGGCCACTACTCGGTAGCGCTGGTCACCCTTCTGCTG
TGCGTTTTGGTCGCCTTCTACTTCGCCAACATCTTCAAGGACAAAGGCGA
ACTGGAGGACGAGGGCCTGGGGGCCGACGAGCCGCGCGATGAGGAGGATT
CCGAGTCACGGACTCCGCAAGGGGAGGAAACCGACGATGACGAGGCCTAC
GAAGAGAACTCCACCGAAAGCGAAGTTGAGCTAATCGAGGAACAGCTGCC
CGAGCACAGCTACAACCACCTGATGGGCCAGCTCAAGGCCAAGAGGCTCC
AGCATAAGATGGAGAAGACCCTGACTCCCAGCCAAATCGAGGAGGAGCGC
CGAATAGAGCGCGAGCAGCTGGCGGCCATCTTTGAGCTCCTGCGCAAACA
GGAGGCGGAATTGAACCTCCAGGACCGAATAAGCGACCAGGATCTCAAGC
AGCAGGTGCGGCTCTATCGCGCAAGCTTTCTAGACCAT
BO06567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-RA | 507 | CG7407-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-RA | 1049 | CG7407-RA | 67..575 | 12..520 | 2530 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21823726..21824097 | 149..520 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 21823527..21823664 | 12..149 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:01:49 has no hits.
BO06567.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:41 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:24 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 63..576 | 12..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:45:13 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 72..575 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:41 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 63..576 | 12..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:36 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7407-RA | 72..575 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:36 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21823532..21823663 | 17..148 | 100 | -> | Plus |
| 3L | 21823726..21824097 | 149..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:45:13 Download gff for
BO06567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21816632..21816763 | 17..148 | 100 | -> | Plus |
| arm_3L | 21816826..21817197 | 149..522 | 99 | | Plus |
BO06567.pep Sequence
Translation from 16 to 538
> BO06567.pep
MQDFLPSLDVLFLGLPGHYSVALVTLLLCVLVAFYFANIFKDKGELEDEG
LGADEPRDEEDSESRTPQGEETDDDEAYEENSTESEVELIEEQLPEHSYN
HLMGQLKAKRLQHKMEKTLTPSQIEEERRIEREQLAAIFELLRKQEAELN
LQDRISDQDLKQQVRLYRASFLDH
BO06567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7407-PA | 168 | CG7407-PA | 1..168 | 1..168 | 852 | 100 | Plus |
