Clone Sequence Records
BO06570.3prime Sequence
575 bp (574 high quality bases) assembled on 2005-12-03
> BO06570.3prime
ATGGTCTAGAAAGCTTGCCTTGAGCAGACAGCACTCGAAGTAGGTCTCGC
CCACACAGCCACCACGCATCGCCTTCTTTACATTGTTCTCGAACTGACGG
CGGTTGGTCTGCAGGACGTCGGCCGCCTCCTTGTTGAGCGGATCCTCGGG
ATTGGGTTCCAAGAATAGAAACTGCAAGCCATAGACGATGGAGTTGATGT
TCAGCACTGGATTCCAGTCCTCGCGCAGAATGTTGAGGCAGACGTTGCCA
TCCAGGTCAATATTGGGATGGTACACCTGGGTGGCGCACTTCACCTTGGG
CGGCTCGTGCGGATAGTTGGATCCGACGCGGAAATTGAACACGAAGCGCC
CGTCTCTGTAGAAGCCCTCGTCGGGCGAGATGATAAGCTTGAAGTTGAGC
AAGTCATTGGGATCGGGAAAGTCTGTGGCGCAAGTGTTTGGCAGGTTCAG
TTCGTTAATATCTTTCTGTATGCGCAGCTGGGCGGCGGACGCTTTCTTCT
GCTGACTGCCCTTTTGCTCGCCGTCTTTCTTCTGCTGCTTAAGCGTGAAT
AGTTTAATCATGTCGACTGATAACT
BO06570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7375-PA | 546 | CG7375-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 1729 | CG7375-RC | 291..833 | 561..19 | 2715 | 100 | Minus |
UbcE2M-RB | 916 | CG7375-RB | 164..706 | 561..19 | 2715 | 100 | Minus |
UbcE2M-RA | 913 | CG7375-RA | 161..703 | 561..19 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8197141..8197445 | 159..463 | 1525 | 100 | Plus |
3L | 28110227 | 3L | 8196743..8196884 | 19..160 | 710 | 100 | Plus |
3L | 28110227 | 3L | 8197522..8197621 | 462..561 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:22:03 has no hits.
BO06570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:26 Download gff for
BO06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 16..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:29 Download gff for
BO06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 16..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:17 Download gff for
BO06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc12-RA | 161..703 | 19..561 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:56 Download gff for
BO06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2M-RA | 161..703 | 19..561 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:56 Download gff for
BO06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8196743..8196883 | 19..159 | 100 | <- | Plus |
3L | 8197142..8197443 | 160..461 | 100 | <- | Plus |
3L | 8197522..8197621 | 462..561 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:17 Download gff for
BO06570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8189843..8189983 | 19..159 | 100 | <- | Plus |
arm_3L | 8190242..8190543 | 160..461 | 100 | <- | Plus |
arm_3L | 8190622..8190721 | 462..561 | 100 | | Plus |
BO06570.5prime Sequence
575 bp (574 high quality bases) assembled on 2005-12-03
> BO06570.5prime
GAAGTTATCAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGA
AAGACGGCGAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAG
CTGCGCATACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGC
CACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCT
CGCCCGACGAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGC
GTCGGATCCAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCA
GGTGTACCATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTC
TGCGCGAGGACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGC
TTGCAGTTTCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGA
GGCGGCCGACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAA
AGAAGGCGATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGT
CTGCTCAAGGCAAGCTTTCTAGACC
BO06570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7375-PA | 546 | CG7375-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 1729 | CG7375-RC | 291..833 | 17..559 | 2715 | 100 | Plus |
UbcE2M-RB | 916 | CG7375-RB | 164..706 | 17..559 | 2715 | 100 | Plus |
UbcE2M-RA | 913 | CG7375-RA | 161..703 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8197141..8197445 | 419..115 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 8196743..8196884 | 559..418 | 710 | 100 | Minus |
3L | 28110227 | 3L | 8197522..8197621 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:00:15 has no hits.
BO06570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:27 Download gff for
BO06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 17..562 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:31 Download gff for
BO06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-PA | 1..546 | 17..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:58 Download gff for
BO06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc12-RA | 161..703 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:39:43 Download gff for
BO06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2M-RA | 161..703 | 17..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:39:43 Download gff for
BO06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8196743..8196883 | 419..559 | 100 | <- | Minus |
3L | 8197142..8197443 | 117..418 | 100 | <- | Minus |
3L | 8197522..8197621 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:58 Download gff for
BO06570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8189843..8189983 | 419..559 | 100 | <- | Minus |
arm_3L | 8190242..8190543 | 117..418 | 100 | <- | Minus |
arm_3L | 8190622..8190721 | 17..116 | 100 | | Minus |
BO06570.complete Sequence
577 bp (577 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630449
> BO06570.complete
GAAGTTATCAGTCGACATGATTAAACTATTCACGCTTAAGCAGCAGAAGA
AAGACGGCGAGCAAAAGGGCAGTCAGCAGAAGAAAGCGTCCGCCGCCCAG
CTGCGCATACAGAAAGATATTAACGAACTGAACCTGCCAAACACTTGCGC
CACAGACTTTCCCGATCCCAATGACTTGCTCAACTTCAAGCTTATCATCT
CGCCCGACGAGGGCTTCTACAGAGACGGGCGCTTCGTGTTCAATTTCCGC
GTCGGATCCAACTATCCGCACGAGCCGCCCAAGGTGAAGTGCGCCACCCA
GGTGTACCATCCCAATATTGACCTGGATGGCAACGTCTGCCTCAACATTC
TGCGCGAGGACTGGAATCCAGTGCTGAACATCAACTCCATCGTCTATGGC
TTGCAGTTTCTATTCTTGGAACCCAATCCCGAGGATCCGCTCAACAAGGA
GGCGGCCGACGTCCTGCAGACCAACCGCCGTCAGTTCGAGAACAATGTAA
AGAAGGCGATGCGTGGTGGCTGTGTGGGCGAGACCTACTTCGAGTGCTGT
CTGCTCAAGGCAAGCTTTCTAGACCAT
BO06570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 546 | CG7375-PC | 1..543 | 17..559 | 2715 | 100 | Plus |
UbcE2M-RB | 546 | CG7375-PB | 1..543 | 17..559 | 2715 | 100 | Plus |
UbcE2M-RA | 546 | CG7375-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-RC | 1729 | CG7375-RC | 291..833 | 17..559 | 2715 | 100 | Plus |
UbcE2M-RB | 916 | CG7375-RB | 164..706 | 17..559 | 2715 | 100 | Plus |
UbcE2M-RA | 913 | CG7375-RA | 161..703 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8197141..8197445 | 419..115 | 1525 | 100 | Minus |
3L | 28110227 | 3L | 8196743..8196884 | 559..418 | 710 | 100 | Minus |
3L | 28110227 | 3L | 8197522..8197621 | 116..17 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:17 has no hits.
BO06570.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:42 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-RA | 1..546 | 17..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:26 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-RA | 160..702 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:11 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc12-RA | 161..703 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:42 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7375-RA | 160..702 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:18 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcE2M-RA | 161..703 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:18 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8196740..8196883 | 419..561 | 98 | <- | Minus |
3L | 8197142..8197443 | 117..418 | 100 | <- | Minus |
3L | 8197522..8197621 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:11 Download gff for
BO06570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8189840..8189983 | 419..561 | 98 | <- | Minus |
arm_3L | 8190242..8190543 | 117..418 | 100 | <- | Minus |
arm_3L | 8190622..8190721 | 17..116 | 100 | | Minus |
BO06570.pep Sequence
Translation from 16 to 577
> BO06570.pep
MIKLFTLKQQKKDGEQKGSQQKKASAAQLRIQKDINELNLPNTCATDFPD
PNDLLNFKLIISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPN
IDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVL
QTNRRQFENNVKKAMRGGCVGETYFECCLLKASFLDH
BO06570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcE2M-PC | 181 | CG7375-PC | 1..181 | 1..181 | 975 | 100 | Plus |
UbcE2M-PB | 181 | CG7375-PB | 1..181 | 1..181 | 975 | 100 | Plus |
UbcE2M-PA | 181 | CG7375-PA | 1..181 | 1..181 | 975 | 100 | Plus |
Ubc6-PC | 151 | CG2013-PC | 2..151 | 24..176 | 249 | 31 | Plus |
Ubc6-PA | 151 | CG2013-PA | 2..151 | 24..176 | 249 | 31 | Plus |