Clone Sequence Records
BO06571.3prime Sequence
821 bp (725 high quality bases) assembled on 2005-12-03
> BO06571.3prime
ATGGTCTAGAAAGCTTGCCTTGCCACCGGCAGTGAATTTGGAGAGCTTTT
CCAGCAGACCAATGTAGGAAGTGTGCTCATGGGCAGTGGCTAGGTCCGAC
AGTTTTTCGGCAAACTCCTGACTGATGCCCTTCTCCTCCAGCAAGTTGAT
CAGCAAGTCGTACAAGTAACCGTCAAGCACGTCGCCTGCGACGGCGTAGA
CCTTATCGTTCCACTCGCCCTCGAAGATGGCCATTTCATCAATGGAGAAG
ACATCGTTGTACTCGCCCTCCTGAGCTTCGCCTTGAAGGAAGCTGCAGGT
AAAGGACAGCGTAGAGTTGCCCTTTATGATGTCCACCTCGAACTGGGGCT
TGCTTCTCATTTCACCGAGATCCGGCTTGTCAGCATTGGGGTTGATTTCG
GGCTCCTCCTCGCTGTCCACCGTATGGTTCACATTGAAGCTGACCACCAC
CTTTTCCTTATCCGTCTGCTTGGTGAGCTCCACATCGGCGCCGGTCAGTT
TTACGGCGAATCCATCCAGGGTGCTTGGCACCGTCTTGCCCTTTTGAACC
TTGCGCTCGGCCACTATCTCCTCGGTGAGGAACTCCACCAGTTCCCGCTC
ACATTTGGTGTGCACGTTGCAGCCGCACGTGCAATTAATGCTGGGCTTGT
GGAGATTCAACACGGTTACATGATCGGATCCTCCGGCTGTCACCGGCTTT
TTGGTCATGTGCCACAGGCTGCGGGTGAAATCGCGCTTGCCGAGAGATCC
GGCACTGGAGCTGGCCAGAGCGGCAAATCGCATGGTTGCTGTCCTTAGGC
TGTTCATGTCGACTGATAACT
BO06571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6459-PA | 792 | CG6459-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 1154 | CG6459-RA | 107..895 | 807..19 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17671865..17672209 | 258..602 | 1725 | 100 | Plus |
2R | 25286936 | 2R | 17671568..17671806 | 19..257 | 1195 | 100 | Plus |
2R | 25286936 | 2R | 17672328..17672534 | 601..807 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:31:22 has no hits.
BO06571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:28 Download gff for
BO06571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:32 Download gff for
BO06571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:36 Download gff for
BO06571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 11..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:44 Download gff for
BO06571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 11..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:44 Download gff for
BO06571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17671560..17671806 | 11..257 | 98 | <- | Plus |
2R | 17671865..17672209 | 258..602 | 100 | <- | Plus |
2R | 17672330..17672534 | 603..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:36 Download gff for
BO06571.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13559065..13559311 | 11..257 | 98 | <- | Plus |
arm_2R | 13559370..13559714 | 258..602 | 100 | <- | Plus |
arm_2R | 13559835..13560039 | 603..807 | 100 | | Plus |
BO06571.5prime Sequence
821 bp (713 high quality bases) assembled on 2005-12-03
> BO06571.5prime
GAAGTTATCAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTG
CCGCTCTGGCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACC
CGCAGCCTGTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGA
TCATGTAACCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCG
GCTGCAACGTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACC
GAGGAGATAGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAG
CACCCTGGATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCA
CCAAGCAGACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCAT
ACGGTGGACAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCC
GGATCTCGGTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAA
AGGGCAACTCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCT
CAGGAGGGCGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTT
CGAGGGCGAGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTG
ACGGTTACTTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATC
AGTCAGGAGTTTGCCGAANAACTGTCGGACCTAGCCACTGCCCATGAGCA
CACTTCCTACATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTG
GCAAGGCAAGCTTTCTAGACC
BO06571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6459-PA | 792 | CG6459-RA | 1..789 | 17..805 | 3926 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 1154 | CG6459-RA | 107..895 | 17..805 | 3934 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17671865..17672209 | 566..222 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 17671568..17671806 | 805..567 | 1184 | 99.6 | Minus |
2R | 25286936 | 2R | 17672328..17672534 | 223..17 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:00:24 has no hits.
BO06571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:29 Download gff for
BO06571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:34 Download gff for
BO06571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:59 Download gff for
BO06571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:40:19 Download gff for
BO06571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..903 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:40:19 Download gff for
BO06571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17671560..17671806 | 567..813 | 97 | <- | Minus |
2R | 17671865..17672209 | 222..566 | 100 | <- | Minus |
2R | 17672330..17672534 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:59 Download gff for
BO06571.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13559065..13559311 | 567..813 | 97 | <- | Minus |
arm_2R | 13559370..13559714 | 222..566 | 100 | <- | Minus |
arm_2R | 13559835..13560039 | 17..221 | 100 | | Minus |
BO06571.complete Sequence
823 bp (823 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630450
> BO06571.complete
GAAGTTATCAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTG
CCGCTCTGGCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACC
CGCAGCCTGTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGA
TCATGTAACCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCG
GCTGCAACGTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACC
GAGGAGATAGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAG
CACCCTGGATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCA
CCAAGCAGACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCAT
ACGGTGGACAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCC
GGATCTCGGTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAA
AGGGCAACTCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCT
CAGGAGGGCGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTT
CGAGGGCGAGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTG
ACGGTTACTTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATC
AGTCAGGAGTTTGCCGAAAAACTGTCGGACCTAGCCACTGCCCATGAGCA
CACTTCCTACATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTG
GCAAGGCAAGCTTTCTAGACCAT
BO06571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 792 | CG6459-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-RA | 1154 | CG6459-RA | 107..895 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17671865..17672209 | 566..222 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 17671568..17671806 | 805..567 | 1195 | 100 | Minus |
2R | 25286936 | 2R | 17672328..17672534 | 223..17 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:53:38 has no hits.
BO06571.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:43 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-RA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:28 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-RA | 102..898 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:07 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..895 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:43 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6459-RA | 102..898 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:03 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P32-RA | 107..895 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:03 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17671565..17671806 | 567..807 | 99 | <- | Minus |
2R | 17671865..17672209 | 222..566 | 100 | <- | Minus |
2R | 17672330..17672534 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:07 Download gff for
BO06571.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13559070..13559311 | 567..807 | 99 | <- | Minus |
arm_2R | 13559370..13559714 | 222..566 | 100 | <- | Minus |
arm_2R | 13559835..13560039 | 17..221 | 100 | | Minus |
BO06571.pep Sequence
Translation from 16 to 823
> BO06571.pep
MNSLRTATMRFAALASSSAGSLGKRDFTRSLWHMTKKPVTAGGSDHVTVL
NLHKPSINCTCGCNVHTKCERELVEFLTEEIVAERKVQKGKTVPSTLDGF
AVKLTGADVELTKQTDKEKVVVSFNVNHTVDSEEEPEINPNADKPDLGEM
RSKPQFEVDIIKGNSTLSFTCSFLQGEAQEGEYNDVFSIDEMAIFEGEWN
DKVYAVAGDVLDGYLYDLLINLLEEKGISQEFAEKLSDLATAHEHTSYIG
LLEKLSKFTAGGKASFLDH
BO06571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P32-PA | 263 | CG6459-PA | 1..263 | 1..263 | 1358 | 100 | Plus |