Clone BO06571 Report

Search the DGRC for BO06571

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG6459-RA
Protein status:BO06571.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO06571.3prime Sequence

821 bp (725 high quality bases) assembled on 2005-12-03

> BO06571.3prime
ATGGTCTAGAAAGCTTGCCTTGCCACCGGCAGTGAATTTGGAGAGCTTTT
CCAGCAGACCAATGTAGGAAGTGTGCTCATGGGCAGTGGCTAGGTCCGAC
AGTTTTTCGGCAAACTCCTGACTGATGCCCTTCTCCTCCAGCAAGTTGAT
CAGCAAGTCGTACAAGTAACCGTCAAGCACGTCGCCTGCGACGGCGTAGA
CCTTATCGTTCCACTCGCCCTCGAAGATGGCCATTTCATCAATGGAGAAG
ACATCGTTGTACTCGCCCTCCTGAGCTTCGCCTTGAAGGAAGCTGCAGGT
AAAGGACAGCGTAGAGTTGCCCTTTATGATGTCCACCTCGAACTGGGGCT
TGCTTCTCATTTCACCGAGATCCGGCTTGTCAGCATTGGGGTTGATTTCG
GGCTCCTCCTCGCTGTCCACCGTATGGTTCACATTGAAGCTGACCACCAC
CTTTTCCTTATCCGTCTGCTTGGTGAGCTCCACATCGGCGCCGGTCAGTT
TTACGGCGAATCCATCCAGGGTGCTTGGCACCGTCTTGCCCTTTTGAACC
TTGCGCTCGGCCACTATCTCCTCGGTGAGGAACTCCACCAGTTCCCGCTC
ACATTTGGTGTGCACGTTGCAGCCGCACGTGCAATTAATGCTGGGCTTGT
GGAGATTCAACACGGTTACATGATCGGATCCTCCGGCTGTCACCGGCTTT
TTGGTCATGTGCCACAGGCTGCGGGTGAAATCGCGCTTGCCGAGAGATCC
GGCACTGGAGCTGGCCAGAGCGGCAAATCGCATGGTTGCTGTCCTTAGGC
TGTTCATGTCGACTGATAACT

BO06571.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6459-PA 792 CG6459-RA 1..789 807..19 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
P32-RA 1154 CG6459-RA 107..895 807..19 3945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17671865..17672209 258..602 1725 100 Plus
2R 25286936 2R 17671568..17671806 19..257 1195 100 Plus
2R 25286936 2R 17672328..17672534 601..807 1035 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:31:22 has no hits.

BO06571.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:28 Download gff for BO06571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6459-PA 1..792 16..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:32 Download gff for BO06571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6459-PA 1..792 16..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:36 Download gff for BO06571.3prime
Subject Subject Range Query Range Percent Splice Strand
P32-RA 107..903 11..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:44 Download gff for BO06571.3prime
Subject Subject Range Query Range Percent Splice Strand
P32-RA 107..903 11..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:44 Download gff for BO06571.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17671560..17671806 11..257 98 <- Plus
2R 17671865..17672209 258..602 100 <- Plus
2R 17672330..17672534 603..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:36 Download gff for BO06571.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13559065..13559311 11..257 98 <- Plus
arm_2R 13559370..13559714 258..602 100 <- Plus
arm_2R 13559835..13560039 603..807 100   Plus

BO06571.5prime Sequence

821 bp (713 high quality bases) assembled on 2005-12-03

> BO06571.5prime
GAAGTTATCAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTG
CCGCTCTGGCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACC
CGCAGCCTGTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGA
TCATGTAACCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCG
GCTGCAACGTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACC
GAGGAGATAGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAG
CACCCTGGATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCA
CCAAGCAGACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCAT
ACGGTGGACAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCC
GGATCTCGGTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAA
AGGGCAACTCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCT
CAGGAGGGCGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTT
CGAGGGCGAGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTG
ACGGTTACTTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATC
AGTCAGGAGTTTGCCGAANAACTGTCGGACCTAGCCACTGCCCATGAGCA
CACTTCCTACATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTG
GCAAGGCAAGCTTTCTAGACC

BO06571.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6459-PA 792 CG6459-RA 1..789 17..805 3926 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
P32-RA 1154 CG6459-RA 107..895 17..805 3934 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17671865..17672209 566..222 1725 100 Minus
2R 25286936 2R 17671568..17671806 805..567 1184 99.6 Minus
2R 25286936 2R 17672328..17672534 223..17 1035 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:00:24 has no hits.

BO06571.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:29 Download gff for BO06571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6459-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:34 Download gff for BO06571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6459-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:32:59 Download gff for BO06571.5prime
Subject Subject Range Query Range Percent Splice Strand
P32-RA 107..903 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:40:19 Download gff for BO06571.5prime
Subject Subject Range Query Range Percent Splice Strand
P32-RA 107..903 17..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:40:19 Download gff for BO06571.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17671560..17671806 567..813 97 <- Minus
2R 17671865..17672209 222..566 100 <- Minus
2R 17672330..17672534 17..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:32:59 Download gff for BO06571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13559065..13559311 567..813 97 <- Minus
arm_2R 13559370..13559714 222..566 100 <- Minus
arm_2R 13559835..13560039 17..221 100   Minus

BO06571.complete Sequence

823 bp (823 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630450

> BO06571.complete
GAAGTTATCAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTG
CCGCTCTGGCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACC
CGCAGCCTGTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGA
TCATGTAACCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCG
GCTGCAACGTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACC
GAGGAGATAGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAG
CACCCTGGATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCA
CCAAGCAGACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCAT
ACGGTGGACAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCC
GGATCTCGGTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAA
AGGGCAACTCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCT
CAGGAGGGCGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTT
CGAGGGCGAGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTG
ACGGTTACTTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATC
AGTCAGGAGTTTGCCGAAAAACTGTCGGACCTAGCCACTGCCCATGAGCA
CACTTCCTACATTGGTCTGCTGGAAAAGCTCTCCAAATTCACTGCCGGTG
GCAAGGCAAGCTTTCTAGACCAT

BO06571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
P32-RA 792 CG6459-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
P32-RA 1154 CG6459-RA 107..895 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17671865..17672209 566..222 1725 100 Minus
2R 25286936 2R 17671568..17671806 805..567 1195 100 Minus
2R 25286936 2R 17672328..17672534 223..17 1035 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:53:38 has no hits.

BO06571.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:43 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:28 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 102..898 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:07 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
P32-RA 107..895 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:43 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
CG6459-RA 102..898 17..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:03 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
P32-RA 107..895 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:03 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17671565..17671806 567..807 99 <- Minus
2R 17671865..17672209 222..566 100 <- Minus
2R 17672330..17672534 17..221 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:07 Download gff for BO06571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13559070..13559311 567..807 99 <- Minus
arm_2R 13559370..13559714 222..566 100 <- Minus
arm_2R 13559835..13560039 17..221 100   Minus

BO06571.pep Sequence

Translation from 16 to 823

> BO06571.pep
MNSLRTATMRFAALASSSAGSLGKRDFTRSLWHMTKKPVTAGGSDHVTVL
NLHKPSINCTCGCNVHTKCERELVEFLTEEIVAERKVQKGKTVPSTLDGF
AVKLTGADVELTKQTDKEKVVVSFNVNHTVDSEEEPEINPNADKPDLGEM
RSKPQFEVDIIKGNSTLSFTCSFLQGEAQEGEYNDVFSIDEMAIFEGEWN
DKVYAVAGDVLDGYLYDLLINLLEEKGISQEFAEKLSDLATAHEHTSYIG
LLEKLSKFTAGGKASFLDH

BO06571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
P32-PA 263 CG6459-PA 1..263 1..263 1358 100 Plus