Clone Sequence Records
BO06573.3prime Sequence
807 bp (747 high quality bases) assembled on 2005-12-03
> BO06573.3prime
ATGGTCTAGAAAGCTTGCCAACTTGCTGCGCTTTTTGTTGGTCCATGTGA
AAAATCGCTTTGGTTTTCTCGATCTATCTTCCTTTCCGGCCACAGTCCAG
GAGGTCATAGCAGGAGGTCTGTGATGTTGGATGAAGGGCACAATGTAACC
GGCGCATTCCTCGGCGGCATGGAGATGCAGATGATGGGTGCCGTTTTCCA
CCTCGTAGAACTCAAAGTGCGGATTATCCTTGGCCAAAATCGATATAGCC
TCGTTGTTGCGGACGGAGAGATATGGTGACAAGGAGCCCTTGATGATTAG
ATATGGCTTTTTAATGATCCGCCTCGCCATTTCTGCCCCCAGACTATCGT
CGATATCTATGTAGTGGTAGTACTTTACTCGAATATCCCTAGTGAAATAG
AACCGTTCGGGATACAGTTTCGACTTGGCCAACTGGCGGTGGAGGAGGTG
CTTAGCCAGTTCGGGGGATACGGAATTAAAGCTTCCCGCAGCCAGCACCT
TTCCCAATTGGTTGTGCGTGTAGGAGGGCGGCTCAATGTAATTTCCCAGC
TTCTGTCGCTCAACATTCACTAGTTGTTTCTCTATACTAAGGTCCATGTA
GTCTATGTCGTTTCTCAAGGGGAGCAGTATGTCCAGGGAGACGATCATAT
CGACGGTGTGAGGAGCAAGAGAGGCATAAATGAAGCTCAGGACTCCGCCC
AGTGAGTGTCCAATGAGAGAGACCTTTGACCATCCGTACTCCTTCATGAC
CAGTGGAATAGTGAACACGTACTCGTACACACTGTAGTACATTCCCGGTG
GCAAATG
BO06573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PA | 1008 | CG5704-RA | 217..1005 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 342..1130 | 807..19 | 3945 | 100 | Minus |
CG5704-RA | 1220 | CG5704-RA | 342..1130 | 807..19 | 3945 | 100 | Minus |
CG15820-RA | 1183 | CG15820-RA | 983..1098 | 228..113 | 265 | 81.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169712..2170500 | 19..807 | 3945 | 100 | Plus |
3L | 28110227 | 3L | 2173080..2173195 | 113..228 | 265 | 81.9 | Plus |
3L | 28110227 | 3L | 2167889..2167998 | 116..225 | 250 | 81.8 | Plus |
3L | 28110227 | 3L | 2171880..2171938 | 182..240 | 235 | 93.2 | Plus |
3L | 28110227 | 3L | 2168401..2168580 | 616..795 | 225 | 75 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:00:32 has no hits.
BO06573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:30 Download gff for
BO06573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 217..1008 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:35 Download gff for
BO06573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 217..1008 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:00 Download gff for
BO06573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 342..1130 | 19..807 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:40:52 Download gff for
BO06573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 342..1130 | 19..807 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:40:52 Download gff for
BO06573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169712..2170500 | 19..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:00 Download gff for
BO06573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169712..2170500 | 19..807 | 100 | | Plus |
BO06573.5prime Sequence
834 bp (785 high quality bases) assembled on 2005-12-03
> BO06573.5prime
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTA
BO06573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PA | 1008 | CG5704-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG15879-PA | 1029 | CG15879-RA | 82..161 | 107..186 | 275 | 93.7 | Plus |
CG15820-PA | 927 | CG15820-RA | 89..164 | 111..186 | 255 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 126..943 | 17..834 | 4090 | 100 | Plus |
CG5704-RA | 1220 | CG5704-RA | 126..943 | 17..834 | 4090 | 100 | Plus |
CG15879-RA | 1389 | CG15879-RA | 126..538 | 12..424 | 730 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169899..2170692 | 834..41 | 3970 | 100 | Minus |
3L | 28110227 | 3L | 2168401..2168761 | 424..64 | 680 | 79.2 | Minus |
3L | 28110227 | 3L | 2173650..2173960 | 360..50 | 520 | 77.8 | Minus |
3L | 28110227 | 3L | 2172387..2172680 | 344..51 | 480 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:31:36 has no hits.
BO06573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:30 Download gff for
BO06573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:37 Download gff for
BO06573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:37 Download gff for
BO06573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 117..942 | 5..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:24 Download gff for
BO06573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 117..942 | 5..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:24 Download gff for
BO06573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169900..2170692 | 41..833 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:37 Download gff for
BO06573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169900..2170692 | 41..833 | 100 | <- | Minus |
BO06573.complete Sequence
1039 bp assembled on 2007-10-17
GenBank Submission: FJ638641
> BO06573.complete
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGC
ACCCATCATCTGCATCTCCATGCCGCCGAGGAATGCGCCGGTTACATTGT
GCCCTTCATCCAACATCACAGACCTCCTGCTATGACCTCCTGGACTGTGG
CCGGAAAGGAAGATAGATCGAGAAAACCAAAGCGATTTTTCACATGGACC
AACAAAAAGCGCAGCAAGTTGGCAAGCTTTCTAGACCAT
BO06573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1008 | CG5704-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
CG5704-RA | 1008 | CG5704-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
CG15879-RA | 1029 | CG15879-PA | 2..399 | 27..424 | 685 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 126..1130 | 17..1021 | 5025 | 100 | Plus |
CG5704-RA | 1220 | CG5704-RA | 126..1130 | 17..1021 | 5025 | 100 | Plus |
CG15879-RA | 1389 | CG15879-RA | 126..538 | 12..424 | 730 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169712..2170692 | 1021..41 | 4905 | 100 | Minus |
3L | 28110227 | 3L | 2168401..2168761 | 424..64 | 680 | 79.2 | Minus |
3L | 28110227 | 3L | 2173650..2173960 | 360..50 | 520 | 77.8 | Minus |
3L | 28110227 | 3L | 2172387..2172680 | 344..51 | 480 | 77.6 | Minus |
3L | 28110227 | 3L | 2173080..2173195 | 927..812 | 265 | 81.9 | Minus |
3L | 28110227 | 3L | 2167889..2167998 | 924..815 | 250 | 81.8 | Minus |
3L | 28110227 | 3L | 2171880..2171938 | 858..800 | 235 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:55 has no hits.
BO06573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:06 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 1..1008 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:16 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 100..1113 | 5..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:46 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 126..1130 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:12 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 109..1113 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:43 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 126..1130 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:43 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169709..2170692 | 41..1023 | 99 | <- | Minus |
3L | 2170823..2170846 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:46 Download gff for
BO06573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169709..2170692 | 41..1023 | 99 | <- | Minus |
arm_3L | 2170823..2170846 | 17..40 | 100 | | Minus |
BO06573.pep Sequence
Translation from 16 to 1039
> BO06573.pep
MGTLSLSDFEAVKIPVPWGHISGRWYGNRNERPILAIHGWLDNLGTFDRL
IPLLPDYLGVLCIDLPGHGRSSHLPPGMYYSVYEYVFTIPLVMKEYGWSK
VSLIGHSLGGVLSFIYASLAPHTVDMIVSLDILLPLRNDIDYMDLSIEKQ
LVNVERQKLGNYIEPPSYTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAK
SKLYPERFYFTRDIRVKYYHYIDIDDSLGAEMARRIIKKPYLIIKGSLSP
YLSVRNNEAISILAKDNPHFEFYEVENGTHHLHLHAAEECAGYIVPFIQH
HRPPAMTSWTVAGKEDRSRKPKRFFTWTNKKRSKLASFLDH
BO06573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PB | 335 | CG5704-PB | 1..335 | 1..335 | 1791 | 100 | Plus |
CG5704-PA | 335 | CG5704-PA | 1..335 | 1..335 | 1791 | 100 | Plus |
CG15879-PA | 342 | CG15879-PA | 1..342 | 4..335 | 1212 | 65.2 | Plus |
CG15820-PA | 308 | CG15820-PA | 7..303 | 9..304 | 1096 | 68.4 | Plus |
CG5707-PA | 357 | CG5707-PA | 22..329 | 12..316 | 799 | 49.2 | Plus |