Clone BO06579 Report

Search the DGRC for BO06579

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG8149-RA
Protein status:BO06579.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO06579.3prime Sequence

949 bp (791 high quality bases) assembled on 2005-12-03

> BO06579.3prime
ATGGTCTAGAAAGCTTGCATTTGTGGACGGGGCTGTTTTGAATCTTTCCA
AGCGAGCGCGCGCCTTCTCTGACCAGGCGTCCTTGGATTCAGTTGTGGTA
GGCGTGGTGGTAGCTGCTGAGACTGCTCCTGCTCCAAATCGCTCCTTCCG
TTTCTGGAGACGATCATCGGCCTTTGAGGTCGGTGCTTTGTCAGGCACCA
CGAATCCGAAACGCTCGGCACGTTTTTTGAGTGCCTCCTTTTGCTGCTCC
TCGGTTTCCTTGTTACCTTTGTTGGCCGTAATGGAGGCACTAGAGGATTT
ATTGATGGCCACTGCCACTGCGGTTGCAGTGTTGGCCACAGCGGGGGGTG
TTATGCCAAACTTTTTGGCCCGCAGTTCCAATCGCTCTTGTGCAGTCAGC
TGGTTAAGTTTCTTGTCGCCTGATGGCTTCTCTCCTTCCGTCTTTGGTCC
GACCACAATCGGCTTATGCTTCTTGGTAGGAGTTTCGCCGGTGGAGTCAC
TAGCAGCTGCAGCGGGCGCCTCGTTCTCCTTCGATGGAGTTGTCCCCGTG
CTGGCTACCGTGCCCGTCGACTGCTGGGAATTATTTCGCTTCAGAACTAT
TTTCTTGGTCGGCGCAGCTGCATCTGGGGCCGAAGACGTCTTCTCTTCCG
CTAGAAGGTCCGGAATGGCCACAGTTGTGGGTGTGCTAACCGGACTTTTC
AGTAGCTCATCGTCGTTCTCATCGCCCAGCAGCTTGTGCTCATCCTCGTC
GGTGAAAGACACATCGTCGTCGTCAATGGCATCTGCTATGGCCGAATCCT
CCAGAGAAAGGTCCCCCTCTAATAACGCGGTCTGNCATCGGGTCTGCAGT
TCGGTTTTATTCCATTCACGGCGAGCCCTCGAAGCTTCAGCTCGCGCTTC
AAATCCGCACCTTCATTTTAGTCACGTCGCTTTCAGGCATGTCGACTGA

BO06579.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-PA 927 CG8149-RA 82..924 861..19 4121 99.5 Minus
CG8149-PA 927 CG8149-RA 34..82 908..860 245 100 Minus
CG8149-PA 927 CG8149-RA 1..33 940..908 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-RA 1156 CG8149-RA 70..993 940..19 4514 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9504812..9505702 908..19 4349 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 16:03:27 has no hits.

BO06579.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:41 Download gff for BO06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-PA 1..927 15..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:52 Download gff for BO06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-PA 1..927 15..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:16 Download gff for BO06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 65..997 14..947 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:47:07 Download gff for BO06579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 65..997 14..947 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:47:07 Download gff for BO06579.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9504809..9505706 14..910 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:16 Download gff for BO06579.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5330531..5331428 14..910 99   Minus

BO06579.5prime Sequence

891 bp (782 high quality bases) assembled on 2005-12-03

> BO06579.5prime
GAAGTTATCAGTCGACATGCCTGAAAGCGACGTGACTAAAATGAAGGTGG
CGGATTTGAAGCGCGAGCTGAAGCTTCGAGGGCTCGCCGTGAATGGAAAT
AAAACCGAACTGCAGGACCGATTGCAGACCGCGTTATTAGAGGGGGACCT
TTCTCTGGAGGATTCGGCCATAGCAGATGCCATTGACGACGACGATGTGT
CTTTCACCGACGAGGATGAGCACAAGCTGCTGGGCGATGAGAACGACGAT
GAGCTACTGAAAAGTCCGGTTAGCACACCCACAACTGTGGCCATTCCGGA
CCTTCTAGCGGAAGAGAAGACGTCTTCGGCCCCAGATGCAGCTGCGCCGA
CCAAGAAAATAGTTCTGAAGCGAAATAATTCCCAGCAGTCGACGGGCACG
GTAGCCAGCACGGGGACAACTCCATCGAAGGAGAACGAGGCGCCCGCTGC
AGCTGCTAGTGACTCCACCGGCGAAACTCCTACCAAGAAGCATAAGCCGA
TTGTGGTCGGACCAAAGACGGAAGGAGAGAAGCCATCAGGCGACAAGAAA
CTTAACCAGCTGACTGCACAAGAGCGATTGGAACTGCGGGCCAAAAAGTT
TGGCATAACACCCCCCGCTGTGGCCAACACTGCAACCGCAGTGGCAGTGG
CCATCAATAAATCCTCTAGTGCCTCCATTACGGCCAACAAAGGTAACAAG
GAAACCGAGGAGCAGCAAAAGGAGGCACTCAAAAAACGTGCCGAGCGTTT
CGGATTCGTGGTGCCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTC
TCCAGAAACGGAAGGAGCGATTTGGAGCAGGAGCAGTCTCAGCAGCTACC
ACCACGCCTACCACAACTGAATCAAAGGACGCCTGGTCAGA

BO06579.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-PA 927 CG8149-RA 1..875 17..891 4350 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-RA 1156 CG8149-RA 70..944 17..891 4360 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9504807..9505653 45..891 4220 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 23:02:24 has no hits.

BO06579.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:42 Download gff for BO06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:54 Download gff for BO06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:34 Download gff for BO06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 65..943 10..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:11 Download gff for BO06579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 65..943 10..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:11 Download gff for BO06579.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9504809..9505652 47..890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:34 Download gff for BO06579.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5330531..5331374 47..890 99   Plus

BO06579.complete Sequence

958 bp (958 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630451

> BO06579.complete
GAAGTTATCAGTCGACATGCCTGAAAGCGACGTGACTAAAATGAAGGTGG
CGGATTTGAAGCGCGAGCTGAAGCTTCGAGGGCTCGCCGTGAATGGAAAT
AAAACCGAACTGCAGGACCGATTGCAGACCGCGTTATTAGAGGGGGACCT
TTCTCTGGAGGATTCGGCCATAGCAGATGCCATTGACGACGACGATGTGT
CTTTCACCGACGAGGATGAGCACAAGCTGCTGGGCGATGAGAACGACGAT
GAGCTACTGAAAAGTCCGGTTAGCACACCCACAACTGTGGCCATTCCGGA
CCTTCTAGCGGAAGAGAAGACGTCTTCGGCCCCAGATGCAGCTGCGCCGA
CCAAGAAAATAGTTCTGAAGCGAAATAATTCCCAGCAGTCGACGGGCACG
GTAGCCAGCACGGGGACAACTCCATCGAAGGAGAACGAGGCGCCCGCTGC
AGCTGCTAGTGACTCCACCGGCGAAACTCCTACCAAGAAGCATAAGCCGA
TTGTGGTCGGACCAAAGACGGAAGGAGAGAAGCCATCAGGCGACAAGAAA
CTTAACCAGCTGACTGCACAAGAGCGATTGGAACTGCGGGCCAAAAAGTT
TGGCATAACACCCCCCGCTGTGGCCAACACTGCAACCGCAGTGGCAGTGG
CCATCAATAAATCCTCTAGTGCCTCCATTACGGCCAACAAAGGTAACAAG
GAAACCGAGGAGCAGCAAAAGGAGGCACTCAAAAAACGTGCCGAGCGTTT
CGGATTCGTGGTGCCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTC
TCCAGAAACGGAAGGAGCGATTTGGAGCAGGAGCAGTCTCAGCAGCTACC
ACCACGCCTACCACAACTGAATCCAAGGACGCCTGGTCAGAGAAGGCGCG
CGCTCGCTTGGAAAGATTCAAAACAGCCCCGTCCACAAATGCAAGCTTTC
TAGACCAT

BO06579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-RA 927 CG8149-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-RA 1156 CG8149-RA 70..993 17..940 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9504807..9505702 45..940 4480 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:25 has no hits.

BO06579.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:44 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 1..927 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:29 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 61..993 10..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:14 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 70..993 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:44 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 61..993 10..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:01 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
CG8149-RA 70..993 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:01 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9504725..9504754 17..46 100 -> Plus
3R 9504809..9505702 47..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:14 Download gff for BO06579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5330447..5330476 17..46 100 -> Plus
arm_3R 5330531..5331424 47..942 99   Plus

BO06579.pep Sequence

Translation from 16 to 958

> BO06579.pep
MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDS
AIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEE
KTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDS
TGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPP
AVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVP
DKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLER
FKTAPSTNASFLDH

BO06579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8149-PA 308 CG8149-PA 1..308 1..308 1532 100 Plus