Clone Sequence Records
BO06579.3prime Sequence
949 bp (791 high quality bases) assembled on 2005-12-03
> BO06579.3prime
ATGGTCTAGAAAGCTTGCATTTGTGGACGGGGCTGTTTTGAATCTTTCCA
AGCGAGCGCGCGCCTTCTCTGACCAGGCGTCCTTGGATTCAGTTGTGGTA
GGCGTGGTGGTAGCTGCTGAGACTGCTCCTGCTCCAAATCGCTCCTTCCG
TTTCTGGAGACGATCATCGGCCTTTGAGGTCGGTGCTTTGTCAGGCACCA
CGAATCCGAAACGCTCGGCACGTTTTTTGAGTGCCTCCTTTTGCTGCTCC
TCGGTTTCCTTGTTACCTTTGTTGGCCGTAATGGAGGCACTAGAGGATTT
ATTGATGGCCACTGCCACTGCGGTTGCAGTGTTGGCCACAGCGGGGGGTG
TTATGCCAAACTTTTTGGCCCGCAGTTCCAATCGCTCTTGTGCAGTCAGC
TGGTTAAGTTTCTTGTCGCCTGATGGCTTCTCTCCTTCCGTCTTTGGTCC
GACCACAATCGGCTTATGCTTCTTGGTAGGAGTTTCGCCGGTGGAGTCAC
TAGCAGCTGCAGCGGGCGCCTCGTTCTCCTTCGATGGAGTTGTCCCCGTG
CTGGCTACCGTGCCCGTCGACTGCTGGGAATTATTTCGCTTCAGAACTAT
TTTCTTGGTCGGCGCAGCTGCATCTGGGGCCGAAGACGTCTTCTCTTCCG
CTAGAAGGTCCGGAATGGCCACAGTTGTGGGTGTGCTAACCGGACTTTTC
AGTAGCTCATCGTCGTTCTCATCGCCCAGCAGCTTGTGCTCATCCTCGTC
GGTGAAAGACACATCGTCGTCGTCAATGGCATCTGCTATGGCCGAATCCT
CCAGAGAAAGGTCCCCCTCTAATAACGCGGTCTGNCATCGGGTCTGCAGT
TCGGTTTTATTCCATTCACGGCGAGCCCTCGAAGCTTCAGCTCGCGCTTC
AAATCCGCACCTTCATTTTAGTCACGTCGCTTTCAGGCATGTCGACTGA
BO06579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-PA | 927 | CG8149-RA | 82..924 | 861..19 | 4121 | 99.5 | Minus |
CG8149-PA | 927 | CG8149-RA | 34..82 | 908..860 | 245 | 100 | Minus |
CG8149-PA | 927 | CG8149-RA | 1..33 | 940..908 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-RA | 1156 | CG8149-RA | 70..993 | 940..19 | 4514 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9504812..9505702 | 908..19 | 4349 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:03:27 has no hits.
BO06579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:41 Download gff for
BO06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-PA | 1..927 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:52 Download gff for
BO06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-PA | 1..927 | 15..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:16 Download gff for
BO06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 65..997 | 14..947 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:47:07 Download gff for
BO06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 65..997 | 14..947 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:47:07 Download gff for
BO06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9504809..9505706 | 14..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:16 Download gff for
BO06579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5330531..5331428 | 14..910 | 99 | | Minus |
BO06579.5prime Sequence
891 bp (782 high quality bases) assembled on 2005-12-03
> BO06579.5prime
GAAGTTATCAGTCGACATGCCTGAAAGCGACGTGACTAAAATGAAGGTGG
CGGATTTGAAGCGCGAGCTGAAGCTTCGAGGGCTCGCCGTGAATGGAAAT
AAAACCGAACTGCAGGACCGATTGCAGACCGCGTTATTAGAGGGGGACCT
TTCTCTGGAGGATTCGGCCATAGCAGATGCCATTGACGACGACGATGTGT
CTTTCACCGACGAGGATGAGCACAAGCTGCTGGGCGATGAGAACGACGAT
GAGCTACTGAAAAGTCCGGTTAGCACACCCACAACTGTGGCCATTCCGGA
CCTTCTAGCGGAAGAGAAGACGTCTTCGGCCCCAGATGCAGCTGCGCCGA
CCAAGAAAATAGTTCTGAAGCGAAATAATTCCCAGCAGTCGACGGGCACG
GTAGCCAGCACGGGGACAACTCCATCGAAGGAGAACGAGGCGCCCGCTGC
AGCTGCTAGTGACTCCACCGGCGAAACTCCTACCAAGAAGCATAAGCCGA
TTGTGGTCGGACCAAAGACGGAAGGAGAGAAGCCATCAGGCGACAAGAAA
CTTAACCAGCTGACTGCACAAGAGCGATTGGAACTGCGGGCCAAAAAGTT
TGGCATAACACCCCCCGCTGTGGCCAACACTGCAACCGCAGTGGCAGTGG
CCATCAATAAATCCTCTAGTGCCTCCATTACGGCCAACAAAGGTAACAAG
GAAACCGAGGAGCAGCAAAAGGAGGCACTCAAAAAACGTGCCGAGCGTTT
CGGATTCGTGGTGCCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTC
TCCAGAAACGGAAGGAGCGATTTGGAGCAGGAGCAGTCTCAGCAGCTACC
ACCACGCCTACCACAACTGAATCAAAGGACGCCTGGTCAGA
BO06579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-PA | 927 | CG8149-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-RA | 1156 | CG8149-RA | 70..944 | 17..891 | 4360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9504807..9505653 | 45..891 | 4220 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:02:24 has no hits.
BO06579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:42 Download gff for
BO06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:27:54 Download gff for
BO06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:34 Download gff for
BO06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 65..943 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:11 Download gff for
BO06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 65..943 | 10..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:11 Download gff for
BO06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9504809..9505652 | 47..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:34 Download gff for
BO06579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5330531..5331374 | 47..890 | 99 | | Plus |
BO06579.complete Sequence
958 bp (958 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630451
> BO06579.complete
GAAGTTATCAGTCGACATGCCTGAAAGCGACGTGACTAAAATGAAGGTGG
CGGATTTGAAGCGCGAGCTGAAGCTTCGAGGGCTCGCCGTGAATGGAAAT
AAAACCGAACTGCAGGACCGATTGCAGACCGCGTTATTAGAGGGGGACCT
TTCTCTGGAGGATTCGGCCATAGCAGATGCCATTGACGACGACGATGTGT
CTTTCACCGACGAGGATGAGCACAAGCTGCTGGGCGATGAGAACGACGAT
GAGCTACTGAAAAGTCCGGTTAGCACACCCACAACTGTGGCCATTCCGGA
CCTTCTAGCGGAAGAGAAGACGTCTTCGGCCCCAGATGCAGCTGCGCCGA
CCAAGAAAATAGTTCTGAAGCGAAATAATTCCCAGCAGTCGACGGGCACG
GTAGCCAGCACGGGGACAACTCCATCGAAGGAGAACGAGGCGCCCGCTGC
AGCTGCTAGTGACTCCACCGGCGAAACTCCTACCAAGAAGCATAAGCCGA
TTGTGGTCGGACCAAAGACGGAAGGAGAGAAGCCATCAGGCGACAAGAAA
CTTAACCAGCTGACTGCACAAGAGCGATTGGAACTGCGGGCCAAAAAGTT
TGGCATAACACCCCCCGCTGTGGCCAACACTGCAACCGCAGTGGCAGTGG
CCATCAATAAATCCTCTAGTGCCTCCATTACGGCCAACAAAGGTAACAAG
GAAACCGAGGAGCAGCAAAAGGAGGCACTCAAAAAACGTGCCGAGCGTTT
CGGATTCGTGGTGCCTGACAAAGCACCGACCTCAAAGGCCGATGATCGTC
TCCAGAAACGGAAGGAGCGATTTGGAGCAGGAGCAGTCTCAGCAGCTACC
ACCACGCCTACCACAACTGAATCCAAGGACGCCTGGTCAGAGAAGGCGCG
CGCTCGCTTGGAAAGATTCAAAACAGCCCCGTCCACAAATGCAAGCTTTC
TAGACCAT
BO06579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-RA | 927 | CG8149-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-RA | 1156 | CG8149-RA | 70..993 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9504807..9505702 | 45..940 | 4480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:25 has no hits.
BO06579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:44 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:29 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 61..993 | 10..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:14 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 70..993 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:44 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 61..993 | 10..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:01 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8149-RA | 70..993 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:01 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9504725..9504754 | 17..46 | 100 | -> | Plus |
3R | 9504809..9505702 | 47..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:14 Download gff for
BO06579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5330447..5330476 | 17..46 | 100 | -> | Plus |
arm_3R | 5330531..5331424 | 47..942 | 99 | | Plus |
BO06579.pep Sequence
Translation from 16 to 958
> BO06579.pep
MPESDVTKMKVADLKRELKLRGLAVNGNKTELQDRLQTALLEGDLSLEDS
AIADAIDDDDVSFTDEDEHKLLGDENDDELLKSPVSTPTTVAIPDLLAEE
KTSSAPDAAAPTKKIVLKRNNSQQSTGTVASTGTTPSKENEAPAAAASDS
TGETPTKKHKPIVVGPKTEGEKPSGDKKLNQLTAQERLELRAKKFGITPP
AVANTATAVAVAINKSSSASITANKGNKETEEQQKEALKKRAERFGFVVP
DKAPTSKADDRLQKRKERFGAGAVSAATTTPTTTESKDAWSEKARARLER
FKTAPSTNASFLDH
BO06579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8149-PA | 308 | CG8149-PA | 1..308 | 1..308 | 1532 | 100 | Plus |