Clone Sequence Records
BO06587.3prime Sequence
935 bp (776 high quality bases) assembled on 2005-12-03
> BO06587.3prime
ATGGTCTAGAAAGCTTGCCTTCGCTCCGATGGCCTCAACGTATCCGGCAC
AAGTCTCTGGGTCAAAAACGAACAGATTACGGTGTGGCGCCTCCAATTTA
GTAACCACCTTGATGACCTCTTGTGCCACAACGCCGCCGACAACAGCGAC
CGCTGGCGAGATCTGTGCAAAAATCAGACCTAGAGCTTCGTCGCCCAGTA
TAGAGTTGGGCAGCAGTTCGTCGCGAATTCCGCGAAGCAATTCCAGGTCA
GCTTCTCGGGTCTTGTAGCTGGGATCCCGCTTGTGGGTTGTGCGGAACTT
TTGCAGGACACTTAATAGCAAAACACCCGGGCCATTGCGCTTCAATTTTC
GCAAATAACTAGGCTCGGTAACATCGAAATCAAGCCAGGCAGAGTAGCCG
GGATAATCCACATCACGCTGCGTTGGAATGGACACGGTTTCATACTTCTT
TTTCTTCTCCGAATTGGCTACGACCTTGTGCTTAATAACATCCTCGACGT
AGCTGTGCTTCTGCAGACTGGCAAAGTAGAACCCGAAGGTGCCCCACACA
TCGGTGGCTATGAACTTGACGCCCAGGTCCCGGCAAATGGTGTCAATGCG
CAACAGTTCCTCGTTGGTCGCGCCATTGACCACCACAACGTCGAACTGAC
CGAAGAACTCAGAGGTCTTCTCCTTCAAGGGCTCGCGGTCGGCGGAGATG
TCCACCATGGGATTGAGAGCACGTGCCCGTGTCAATGATGCTTCGGCCCG
GTTGGTGTTCAGCGATTCACGGGGGACAAGGAATTGTGAACAAAAGTCCT
CCTCGGTTACGTCCTTGTCATCCAGCAGCTTCACGGAGTTCACTCCGGAC
AGGATGATGTTCTTGGTTATCTCGGCGCCCAGGCCGCACAGTCCAGCGAT
GAGAATCTTGGCCGTGCGAAAGCGTTTCTGAGATT
BO06587.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12276-PA | 1014 | Aos1-RA | 95..1011 | 935..19 | 4560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 186..1102 | 935..19 | 4570 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12432598..12433072 | 19..493 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 12433128..12433555 | 493..920 | 2140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:00:57 has no hits.
BO06587.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:57 Download gff for
BO06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-PA | 95..1014 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:13 Download gff for
BO06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12276-PA | 95..1014 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:05 Download gff for
BO06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 186..1109 | 10..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:43:48 Download gff for
BO06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 186..1109 | 10..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:43:48 Download gff for
BO06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432591..12433072 | 10..493 | 99 | <- | Plus |
3R | 12433129..12433557 | 494..922 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:05 Download gff for
BO06587.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258313..8258794 | 10..493 | 99 | <- | Plus |
arm_3R | 8258851..8259279 | 494..922 | 99 | <- | Plus |
BO06587.5prime Sequence
904 bp (741 high quality bases) assembled on 2005-12-03
> BO06587.5prime
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCCACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTT
BO06587.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12276-PA | 1014 | Aos1-RA | 1..888 | 17..904 | 4415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 92..979 | 17..904 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12433128..12433558 | 553..123 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 12432721..12433072 | 904..553 | 1745 | 99.7 | Minus |
3R | 32079331 | 3R | 12433625..12433731 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:23:22 has no hits.
BO06587.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:59 Download gff for
BO06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:15 Download gff for
BO06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12276-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:25 Download gff for
BO06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..979 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:25 Download gff for
BO06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..979 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:25 Download gff for
BO06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432721..12433072 | 553..904 | 99 | <- | Minus |
3R | 12433129..12433557 | 124..552 | 100 | <- | Minus |
3R | 12433625..12433731 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:25 Download gff for
BO06587.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258443..8258794 | 553..904 | 99 | <- | Minus |
arm_3R | 8258851..8259279 | 124..552 | 100 | <- | Minus |
arm_3R | 8259347..8259453 | 17..123 | 100 | | Minus |
BO06587.complete Sequence
1045 bp (1045 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630453
> BO06587.complete
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTTGTCGGCGGCGTTGTGGCACAAGAGGTCATCAAGGTGGTTACTAAAT
TGGAGGCGCCACACCGTAATCTGTTCGTTTTTGACCCAGAGACTTGTGCC
GGATACGTTGAGGCCATCGGAGCGAAGGCAAGCTTTCTAGACCAT
BO06587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1014 | CG12276-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-RA | 1167 | CG12276-RA | 92..1102 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12432598..12433072 | 1027..553 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 12433128..12433558 | 553..123 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 12433625..12433731 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:48:55 has no hits.
BO06587.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:47 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 1..1014 | 17..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:32 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 174..1191 | 17..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:00 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..1102 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:47 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 174..1191 | 17..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:10 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aos1-RA | 92..1102 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:10 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12432595..12433072 | 553..1029 | 99 | <- | Minus |
3R | 12433129..12433557 | 124..552 | 100 | <- | Minus |
3R | 12433625..12433731 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:00 Download gff for
BO06587.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8258317..8258794 | 553..1029 | 99 | <- | Minus |
arm_3R | 8258851..8259279 | 124..552 | 100 | <- | Minus |
arm_3R | 8259347..8259453 | 17..123 | 100 | | Minus |
BO06587.pep Sequence
Translation from 16 to 1045
> BO06587.pep
MVVDMDTSETAVELTEAENELYDRQIRLWGLESQKRLRTAKILIAGLCGL
GAEITKNIILSGVNSVKLLDDKDVTEEDFCSQFLVPRESLNTNRAEASLT
RARALNPMVDISADREPLKEKTSEFFGQFDVVVVNGATNEELLRIDTICR
DLGVKFIATDVWGTFGFYFASLQKHSYVEDVIKHKVVANSEKKKKYETVS
IPTQRDVDYPGYSAWLDFDVTEPSYLRKLKRNGPGVLLLSVLQKFRTTHK
RDPSYKTREADLELLRGIRDELLPNSILGDEALGLIFAQISPAVAVVGGV
VAQEVIKVVTKLEAPHRNLFVFDPETCAGYVEAIGAKASFLDH
BO06587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aos1-PA | 337 | CG12276-PA | 1..337 | 1..337 | 1710 | 100 | Plus |
Uba1-PC | 1008 | CG1782-PC | 11..172 | 16..180 | 226 | 33.9 | Plus |
Uba1-PA | 1191 | CG1782-PA | 194..355 | 16..180 | 226 | 33.9 | Plus |
APP-BP1-PA | 524 | CG7828-PA | 14..178 | 18..179 | 188 | 29.9 | Plus |
APP-BP1-PB | 524 | CG7828-PB | 14..178 | 18..179 | 188 | 29.9 | Plus |