Clone BO06587 Report

Search the DGRC for BO06587

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptAos1-RA
Protein status:BO06587.pep: validated full length
Sequenced Size:1045

Clone Sequence Records

BO06587.3prime Sequence

935 bp (776 high quality bases) assembled on 2005-12-03

> BO06587.3prime
ATGGTCTAGAAAGCTTGCCTTCGCTCCGATGGCCTCAACGTATCCGGCAC
AAGTCTCTGGGTCAAAAACGAACAGATTACGGTGTGGCGCCTCCAATTTA
GTAACCACCTTGATGACCTCTTGTGCCACAACGCCGCCGACAACAGCGAC
CGCTGGCGAGATCTGTGCAAAAATCAGACCTAGAGCTTCGTCGCCCAGTA
TAGAGTTGGGCAGCAGTTCGTCGCGAATTCCGCGAAGCAATTCCAGGTCA
GCTTCTCGGGTCTTGTAGCTGGGATCCCGCTTGTGGGTTGTGCGGAACTT
TTGCAGGACACTTAATAGCAAAACACCCGGGCCATTGCGCTTCAATTTTC
GCAAATAACTAGGCTCGGTAACATCGAAATCAAGCCAGGCAGAGTAGCCG
GGATAATCCACATCACGCTGCGTTGGAATGGACACGGTTTCATACTTCTT
TTTCTTCTCCGAATTGGCTACGACCTTGTGCTTAATAACATCCTCGACGT
AGCTGTGCTTCTGCAGACTGGCAAAGTAGAACCCGAAGGTGCCCCACACA
TCGGTGGCTATGAACTTGACGCCCAGGTCCCGGCAAATGGTGTCAATGCG
CAACAGTTCCTCGTTGGTCGCGCCATTGACCACCACAACGTCGAACTGAC
CGAAGAACTCAGAGGTCTTCTCCTTCAAGGGCTCGCGGTCGGCGGAGATG
TCCACCATGGGATTGAGAGCACGTGCCCGTGTCAATGATGCTTCGGCCCG
GTTGGTGTTCAGCGATTCACGGGGGACAAGGAATTGTGAACAAAAGTCCT
CCTCGGTTACGTCCTTGTCATCCAGCAGCTTCACGGAGTTCACTCCGGAC
AGGATGATGTTCTTGGTTATCTCGGCGCCCAGGCCGCACAGTCCAGCGAT
GAGAATCTTGGCCGTGCGAAAGCGTTTCTGAGATT

BO06587.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12276-PA 1014 Aos1-RA 95..1011 935..19 4560 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 186..1102 935..19 4570 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12432598..12433072 19..493 2375 100 Plus
3R 32079331 3R 12433128..12433555 493..920 2140 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:00:57 has no hits.

BO06587.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:57 Download gff for BO06587.3prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-PA 95..1014 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:13 Download gff for BO06587.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12276-PA 95..1014 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:33:05 Download gff for BO06587.3prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 186..1109 10..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:43:48 Download gff for BO06587.3prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 186..1109 10..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:43:48 Download gff for BO06587.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12432591..12433072 10..493 99 <- Plus
3R 12433129..12433557 494..922 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:33:05 Download gff for BO06587.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258313..8258794 10..493 99 <- Plus
arm_3R 8258851..8259279 494..922 99 <- Plus

BO06587.5prime Sequence

904 bp (741 high quality bases) assembled on 2005-12-03

> BO06587.5prime
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCCACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTT

BO06587.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12276-PA 1014 Aos1-RA 1..888 17..904 4415 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 92..979 17..904 4425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12433128..12433558 553..123 2155 100 Minus
3R 32079331 3R 12432721..12433072 904..553 1745 99.7 Minus
3R 32079331 3R 12433625..12433731 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:23:22 has no hits.

BO06587.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:53:59 Download gff for BO06587.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:15 Download gff for BO06587.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12276-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:25 Download gff for BO06587.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..979 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:25 Download gff for BO06587.5prime
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..979 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:25 Download gff for BO06587.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12432721..12433072 553..904 99 <- Minus
3R 12433129..12433557 124..552 100 <- Minus
3R 12433625..12433731 17..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:25 Download gff for BO06587.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258443..8258794 553..904 99 <- Minus
arm_3R 8258851..8259279 124..552 100 <- Minus
arm_3R 8259347..8259453 17..123 100   Minus

BO06587.complete Sequence

1045 bp (1045 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630453

> BO06587.complete
GAAGTTATCAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCG
TGGAGCTCACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTC
TGGGGTCTGGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGC
TGGACTGTGCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCG
GAGTGAACTCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGAC
TTTTGTTCACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGC
CGAAGCATCATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCT
CCGCCGACCGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAG
TTCGACGTTGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCAT
TGACACCATTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGT
GGGGCACCTTCGGGTTCTACTTTGCCAGTCTGCAGAAGCACAGCTACGTC
GAGGATGTTATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAA
GTATGAAACCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCT
ACTCTGCCTGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAA
TTGAAGCGCAATGGCCCGGGTGTTTTGCTATTAAGTGTCCTGCAAAAGTT
CCGCACAACCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACC
TGGAATTGCTTCGCGGAATTCGCGACGAACTGCTGCCCAACTCTATACTG
GGCGACGAAGCTCTAGGTCTGATTTTTGCACAGATCTCGCCAGCGGTCGC
TGTTGTCGGCGGCGTTGTGGCACAAGAGGTCATCAAGGTGGTTACTAAAT
TGGAGGCGCCACACCGTAATCTGTTCGTTTTTGACCCAGAGACTTGTGCC
GGATACGTTGAGGCCATCGGAGCGAAGGCAAGCTTTCTAGACCAT

BO06587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1014 CG12276-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-RA 1167 CG12276-RA 92..1102 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12432598..12433072 1027..553 2375 100 Minus
3R 32079331 3R 12433128..12433558 553..123 2155 100 Minus
3R 32079331 3R 12433625..12433731 123..17 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:48:55 has no hits.

BO06587.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:47 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 1..1014 17..1030 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:32 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 174..1191 17..1036 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:00 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..1102 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:47 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 174..1191 17..1036 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:10 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
Aos1-RA 92..1102 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:10 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12432595..12433072 553..1029 99 <- Minus
3R 12433129..12433557 124..552 100 <- Minus
3R 12433625..12433731 17..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:00 Download gff for BO06587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8258317..8258794 553..1029 99 <- Minus
arm_3R 8258851..8259279 124..552 100 <- Minus
arm_3R 8259347..8259453 17..123 100   Minus

BO06587.pep Sequence

Translation from 16 to 1045

> BO06587.pep
MVVDMDTSETAVELTEAENELYDRQIRLWGLESQKRLRTAKILIAGLCGL
GAEITKNIILSGVNSVKLLDDKDVTEEDFCSQFLVPRESLNTNRAEASLT
RARALNPMVDISADREPLKEKTSEFFGQFDVVVVNGATNEELLRIDTICR
DLGVKFIATDVWGTFGFYFASLQKHSYVEDVIKHKVVANSEKKKKYETVS
IPTQRDVDYPGYSAWLDFDVTEPSYLRKLKRNGPGVLLLSVLQKFRTTHK
RDPSYKTREADLELLRGIRDELLPNSILGDEALGLIFAQISPAVAVVGGV
VAQEVIKVVTKLEAPHRNLFVFDPETCAGYVEAIGAKASFLDH

BO06587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Aos1-PA 337 CG12276-PA 1..337 1..337 1710 100 Plus
Uba1-PC 1008 CG1782-PC 11..172 16..180 226 33.9 Plus
Uba1-PA 1191 CG1782-PA 194..355 16..180 226 33.9 Plus
APP-BP1-PA 524 CG7828-PA 14..178 18..179 188 29.9 Plus
APP-BP1-PB 524 CG7828-PB 14..178 18..179 188 29.9 Plus