Clone Sequence Records
BO06591.3prime Sequence
873 bp (835 high quality bases) assembled on 2005-12-03
> BO06591.3prime
ATGGTCTAGAAAGCTTGCCGCCAGCTGCTTGGGCTTAATGAAAGTGCGCT
TGCGCTTGTTGCGTTTTCGCTGCAGCTCCAGGGCGTGCAGTTCCGTGTGC
ACCTCGGCGAAGATCTCCGTCTGCTCCTCCTCGGGAATCGAGCTGCGGTA
GTCCTTCATCATGTCGTACTTCTCCCATGGTTTCTGCACCTTGGCCGCCG
ACAGGCGATGCTTGTCTTTTAGATACTCATCGATGTTGGCCACACCACGC
AGATTCTGTCGTTCCCAGCGCTCCAGCCATGGACGCGGACGGAGCACCAC
CTTAATGTCGTTCACCGGCACCGGAGCACCCTCCTCGAGCGGCTCGGCCT
CCATGTTCTCATCAAAAGTACTGTACTCCGGAAGAGCGTCCCGCAGGTAG
AAAAGACTGTCATCCAGTCGCTTCTCTAGCCGCAACACCTCGATCTTTAG
GATGGTAGGATCATACAGCTCGTAGACCACCTCCATTCCCTGGTGATCAA
TCACGTTGCGAAGAATGAAACGGGCGCGCAGTCCACAGCGATCCCTATTG
ATACAGATACCCACAAATCGACTGGTTTTGCCAGCGGCATGGGGATCCGA
ACTTGTCACCGCAAGCACAGATCCAACGTAGAACTCGGGCAGGTCGATCT
GTTTGCGGCGATCCAGCATGTCCAGTCGCTCCAGCTTCTCGCGCACGAGG
TTGCGCCACTCCACCTTCGGATCGGGCAGGAATTCTGGGTAAACAAACCG
ATAATTGGCCGGAATGATTGTCTTCCGGTTCACCGGTGAAGTCGGCGTGG
TTGGCGGAGCCTCTTTCTTCTGTTCCTCCTGATTTTCAATTACATGTTCC
GCAGTTTTTGGTGGAGAAGGTCA
BO06591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8039-PA | 921 | mRpL19-RA | 79..918 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 1036 | CG8039-RA | 143..996 | 873..19 | 4250 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8674303..8675156 | 873..19 | 4225 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:03:00 has no hits.
BO06591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:05 Download gff for
BO06591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 66..921 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:25 Download gff for
BO06591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 66..921 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:36 Download gff for
BO06591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 144..1001 | 11..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:17 Download gff for
BO06591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 144..1001 | 11..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:17 Download gff for
BO06591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8674304..8675161 | 11..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:36 Download gff for
BO06591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4500026..4500883 | 11..872 | 99 | | Minus |
BO06591.5prime Sequence
931 bp (778 high quality bases) assembled on 2005-12-03
> BO06591.5prime
GAAGTTATCAGTCGACATGAACTTAAGCACAAGAGTTATGCTGAATAGGT
TGACACAGCAGTGTGTCTACAAGCGGATTGTGACCTTCTCCACCAAAACT
GCGGAACATGTAATTGAAAATCAGGAGGAACAGAAGAAAGAGGCTCCGCC
AACCACGCCGACTTCACCGGTGAACCGGAAGACAATCATTCCGGCCAATT
ATCGGTTTGTTTACCCAGAATTCCTGCCCGATCCGAAGGTGGAGTGGCGC
AACCTCGTGCGCGAGAAGCTGGAGCGACTGGACATGCTGGATCGCCGCAA
ACAGATCGACCTGCCCGAGTTCTACGTTGGATCTGTGCTTGCGGTGACAA
GTTCGGATCCCCATGCCGCTGGCAAAACCAGTCGATTTGTGGGTATCTGT
ATCAATAGGGATCGCTGTGGACTGCGCGCCCGTTTCATTCTTCGCAACGT
GATTGATCACCAGGGAATGGAGGTGGTCTACGAGCTGTATGATCCTACCA
TCCTAAAGATCGAGGTGTTGCGGCTAGAGAAGCGACTGGATGACAGTCTT
TTCTACCTGCGGGACGCTCTTCCGGAGTACAGTACTTTTGATGAGAACAT
GGAGGCCGAGCCGCTCGAGGAGGGTGCTCCGGTGCCGGTGAACGACATTA
AGGTGGTGCTCCGTCCGCGTCCATGGCTGGAGCGCTGGGAACGACAGAAT
CTGCGTGGTGTGGCCAACATCGATGAGTATCTAAAAGACAAGCATCGCCT
GTCGGCGGCCAAGGTGCAGAAACCATGGGAGAAGTACGACATGATGAAGG
ACTACCGCAGCTCGATTCCCGAGGAAGAGCAGACGGAGATCTTCGCCGAG
GTGCACACGGAACTGCACGCCCTGNAGCTGCAGCGAAAACGCAACAAGCG
CAAGCGCACTTTCATTAAGCCCAAGCAGCTG
BO06591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8039-PA | 921 | mRpL19-RA | 1..915 | 17..931 | 4531 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 1036 | CG8039-RA | 79..993 | 17..931 | 4549 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8674302..8675153 | 80..931 | 4234 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8674187..8674250 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:03:24 has no hits.
BO06591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:07 Download gff for
BO06591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:26 Download gff for
BO06591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8039-PA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:37 Download gff for
BO06591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 74..993 | 12..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:05 Download gff for
BO06591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 74..993 | 12..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:05 Download gff for
BO06591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8674182..8674250 | 12..80 | 97 | -> | Plus |
| 3R | 8674303..8675153 | 81..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:37 Download gff for
BO06591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4499904..4499972 | 12..80 | 97 | -> | Plus |
| arm_3R | 4500025..4500875 | 81..931 | 99 | | Plus |
BO06591.complete Sequence
952 bp (952 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630454
> BO06591.complete
GAAGTTATCAGTCGACATGAACTTAAGCACAAGAGTTATGCTGAATAGGT
TGACACAGCAGTGTGTCTACAAGCGGATTGTGACCTTCTCCACCAAAACT
GCGGAACATGTAATTGAAAATCAGGAGGAACAGAAGAAAGAGGCTCCGCC
AACCACGCCGACTTCACCGGTGAACCGGAAGACAATCATTCCGGCCAATT
ATCGGTTTGTTTACCCAGAATTCCTGCCCGATCCGAAGGTGGAGTGGCGC
AACCTCGTGCGCGAGAAGCTGGAGCGACTGGACATGCTGGATCGCCGCAA
ACAGATCGACCTGCCCGAGTTCTACGTTGGATCTGTGCTTGCGGTGACAA
GTTCGGATCCCCATGCCGCTGGCAAAACCAGTCGATTTGTGGGTATCTGT
ATCAATAGGGATCGCTGTGGACTGCGCGCCCGTTTCATTCTTCGCAACGT
GATTGATCACCAGGGAATGGAGGTGGTCTACGAGCTGTATGATCCTACCA
TCCTAAAGATCGAGGTGTTGCGGCTAGAGAAGCGACTGGATGACAGTCTT
TTCTACCTGCGGGACGCTCTTCCGGAGTACAGTACTTTTGATGAGAACAT
GGAGGCCGAGCCGCTCGAGGAGGGTGCTCCGGTGCCGGTGAACGACATTA
AGGTGGTGCTCCGTCCGCGTCCATGGCTGGAGCGCTGGGAACGACAGAAT
CTGCGTGGTGTGGCCAACATCGATGAGTATCTAAAAGACAAGCATCGCCT
GTCGGCGGCCAAGGTGCAGAAACCATGGGAGAAGTACGACATGATGAAGG
ACTACCGCAGCTCGATTCCCGAGGAGGAGCAGACGGAGATCTTCGCCGAG
GTGCACACGGAACTGCACGCCCTGGAGCTGCAGCGAAAACGCAACAAGCG
CAAGCGCACTTTCATTAAGCCCAAGCAGCTGGCGGCAAGCTTTCTAGACC
AT
BO06591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 921 | CG8039-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-RA | 1036 | CG8039-RA | 79..996 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8674302..8675156 | 80..934 | 4275 | 100 | Plus |
| 3R | 32079331 | 3R | 8674187..8674250 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:34:24 has no hits.
BO06591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:36 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 1..921 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:19 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 66..993 | 12..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:26 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 79..996 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:36 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 66..993 | 12..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:19 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL19-RA | 79..996 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:19 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8674187..8674250 | 17..80 | 100 | -> | Plus |
| 3R | 8674303..8675156 | 81..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:26 Download gff for
BO06591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4499909..4499972 | 17..80 | 100 | -> | Plus |
| arm_3R | 4500025..4500878 | 81..936 | 99 | | Plus |
BO06591.pep Sequence
Translation from 16 to 952
> BO06591.pep
MNLSTRVMLNRLTQQCVYKRIVTFSTKTAEHVIENQEEQKKEAPPTTPTS
PVNRKTIIPANYRFVYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLP
EFYVGSVLAVTSSDPHAAGKTSRFVGICINRDRCGLRARFILRNVIDHQG
MEVVYELYDPTILKIEVLRLEKRLDDSLFYLRDALPEYSTFDENMEAEPL
EEGAPVPVNDIKVVLRPRPWLERWERQNLRGVANIDEYLKDKHRLSAAKV
QKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHALELQRKRNKRKRTFI
KPKQLAASFLDH
BO06591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL19-PA | 306 | CG8039-PA | 1..306 | 1..306 | 1596 | 100 | Plus |
