Clone BO06595 Report

Search the DGRC for BO06595

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptMED31-RA
Protein status:BO06595.pep: validated full length
Sequenced Size:646

Clone Sequence Records

BO06595.3prime Sequence

644 bp (643 high quality bases) assembled on 2005-12-03

> BO06595.3prime
ATGGTCTAGAAAGCTTGCGTTTAACTCTAGTTTTATGTTGGCCCCCGATG
CCACGCCATTGATTTGCTGCTGCTGCTGGGGATTTCCAGGCTGTGCTTGG
ACAGGCTGTAGGGCAGAAGACGTCTGTTGACTATCCGCCGTGGAAGCTGA
CCCGTTCACGTTGGGGGTAGGTGCTGCTGATTCGCCTCCCGTTGCTGCCT
CCATGCCGTTCGCCTGCTGTTGTTGCTGCTGAAGCTGCTGTTGTTGCTGC
TGGGCGGCCGTAACGTTTTCGATCAGTTTGATGCGCTTGCGAGTGTAGTG
CTGCCACTGCAGAATGGCCTGGTCGTCTATGAACTTGCAGCACTGCGAGT
TGACGATCTCCCGGCGGAAGTGTTCGTACTGCAGCAGATCGAGGAAGTAG
AGGCACATTGGGTACATGAGGTATTTCGCATAGTCCGGCTCCTTCCAGTA
CTGCAGATACTTCAGGTAGTTGATGAACGACTGGTCCTTGAAAAATCCAC
GCTGTGCAAGGAAGTTTAGATAGTTGGGGTTCGACAGGCACTGCACGAAC
TCCAGCTCGATCTGCCAGCGTCGCTTCTGCAGCTCCTCCGACTCGATAGC
AGTCTTACCCTTTCCGTACATTTTGGCCATGTCGACTGATAACT

BO06595.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1057-PA 615 MED31-RA 1..612 630..19 3060 100 Minus
CG1057-PB 615 MED31-RB 1..612 630..19 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 818 CG1057-RC 159..770 630..19 3060 100 Minus
MED31-RB 823 CG1057-RB 164..775 630..19 3060 100 Minus
MED31-RA 1098 CG1057-RA 439..1050 630..19 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4642751..4643244 512..19 2470 100 Minus
3R 32079331 3R 4642569..4642658 602..513 450 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:16:54 has no hits.

BO06595.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:10 Download gff for BO06595.3prime
Subject Subject Range Query Range Percent Splice Strand
MED31-PA 1..615 18..630 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:30 Download gff for BO06595.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1057-PB 1..615 18..630 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:17 Download gff for BO06595.3prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1054 13..638 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:22 Download gff for BO06595.3prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1054 13..638 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:22 Download gff for BO06595.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4642392..4642428 603..638 91 -> Minus
3R 4642569..4642658 513..602 100 -> Minus
3R 4642751..4643248 13..512 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:17 Download gff for BO06595.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 468114..468150 603..638 91 -> Minus
arm_3R 468291..468380 513..602 100 -> Minus
arm_3R 468473..468970 13..512 99   Minus

BO06595.5prime Sequence

644 bp (643 high quality bases) assembled on 2005-12-03

> BO06595.5prime
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACGCAAGCTTTCTAGACC

BO06595.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1057-PA 615 MED31-RA 1..612 17..628 3060 100 Plus
CG1057-PB 615 MED31-RB 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 818 CG1057-RC 159..770 17..628 3060 100 Plus
MED31-RB 823 CG1057-RB 164..775 17..628 3060 100 Plus
MED31-RA 1098 CG1057-RA 439..1050 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4642751..4643244 135..628 2470 100 Plus
3R 32079331 3R 4642569..4642658 45..134 450 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:04:24 has no hits.

BO06595.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:11 Download gff for BO06595.5prime
Subject Subject Range Query Range Percent Splice Strand
MED31-PA 1..615 17..629 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:31 Download gff for BO06595.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1057-PB 1..615 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:39 Download gff for BO06595.5prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1054 9..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:37 Download gff for BO06595.5prime
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 430..1054 9..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:37 Download gff for BO06595.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4642392..4642428 9..44 91 -> Plus
3R 4642569..4642658 45..134 100 -> Plus
3R 4642751..4643248 135..634 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:39 Download gff for BO06595.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 468114..468150 9..44 91 -> Plus
arm_3R 468291..468380 45..134 100 -> Plus
arm_3R 468473..468970 135..634 99   Plus

BO06595.complete Sequence

646 bp (646 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630455

> BO06595.complete
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACGCAAGCTTTCTAGACCAT

BO06595.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 615 CG1057-PC 1..612 17..628 3060 100 Plus
MED31-RB 615 CG1057-PB 1..612 17..628 3060 100 Plus
MED31-RA 615 CG1057-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-RC 818 CG1057-RC 159..770 17..628 3060 100 Plus
MED31-RB 823 CG1057-RB 164..775 17..628 3060 100 Plus
MED31-RA 1098 CG1057-RA 439..1050 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4642751..4643244 135..628 2470 100 Plus
3R 32079331 3R 4642569..4642658 45..134 450 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:53 has no hits.

BO06595.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:39 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RB 1..615 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:04 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RB 144..768 9..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:08 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 439..1050 17..630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:39 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RB 144..768 9..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:05 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
MED31-RA 439..1050 17..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:05 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4642401..4642428 17..44 100 -> Plus
3R 4642569..4642658 45..134 100 -> Plus
3R 4642751..4643244 135..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:08 Download gff for BO06595.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 468123..468150 17..44 100 -> Plus
arm_3R 468291..468380 45..134 100 -> Plus
arm_3R 468473..468966 135..630 99   Plus

BO06595.pep Sequence

Translation from 16 to 646

> BO06595.pep
MAKMYGKGKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQ
SFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKF
IDDQAILQWQHYTRKRIKLIENVTAAQQQQQQLQQQQQQANGMEAATGGE
SAAPTPNVNGSASTADSQQTSSALQPVQAQPGNPQQQQQINGVASGANIK
LELNASFLDH

BO06595.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
MED31-PC 204 CG1057-PC 1..204 1..204 1072 100 Plus
MED31-PB 204 CG1057-PB 1..204 1..204 1072 100 Plus
MED31-PA 204 CG1057-PA 1..204 1..204 1072 100 Plus
MED31-PD 202 CG1057-PD 1..202 1..204 1043 98.5 Plus
MED31-PE 199 CG1057-PE 6..199 11..204 1019 100 Plus