Clone Sequence Records
BO06595.3prime Sequence
644 bp (643 high quality bases) assembled on 2005-12-03
> BO06595.3prime
ATGGTCTAGAAAGCTTGCGTTTAACTCTAGTTTTATGTTGGCCCCCGATG
CCACGCCATTGATTTGCTGCTGCTGCTGGGGATTTCCAGGCTGTGCTTGG
ACAGGCTGTAGGGCAGAAGACGTCTGTTGACTATCCGCCGTGGAAGCTGA
CCCGTTCACGTTGGGGGTAGGTGCTGCTGATTCGCCTCCCGTTGCTGCCT
CCATGCCGTTCGCCTGCTGTTGTTGCTGCTGAAGCTGCTGTTGTTGCTGC
TGGGCGGCCGTAACGTTTTCGATCAGTTTGATGCGCTTGCGAGTGTAGTG
CTGCCACTGCAGAATGGCCTGGTCGTCTATGAACTTGCAGCACTGCGAGT
TGACGATCTCCCGGCGGAAGTGTTCGTACTGCAGCAGATCGAGGAAGTAG
AGGCACATTGGGTACATGAGGTATTTCGCATAGTCCGGCTCCTTCCAGTA
CTGCAGATACTTCAGGTAGTTGATGAACGACTGGTCCTTGAAAAATCCAC
GCTGTGCAAGGAAGTTTAGATAGTTGGGGTTCGACAGGCACTGCACGAAC
TCCAGCTCGATCTGCCAGCGTCGCTTCTGCAGCTCCTCCGACTCGATAGC
AGTCTTACCCTTTCCGTACATTTTGGCCATGTCGACTGATAACT
BO06595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1057-PA | 615 | MED31-RA | 1..612 | 630..19 | 3060 | 100 | Minus |
CG1057-PB | 615 | MED31-RB | 1..612 | 630..19 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 818 | CG1057-RC | 159..770 | 630..19 | 3060 | 100 | Minus |
MED31-RB | 823 | CG1057-RB | 164..775 | 630..19 | 3060 | 100 | Minus |
MED31-RA | 1098 | CG1057-RA | 439..1050 | 630..19 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643244 | 512..19 | 2470 | 100 | Minus |
3R | 32079331 | 3R | 4642569..4642658 | 602..513 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:16:54 has no hits.
BO06595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:10 Download gff for
BO06595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-PA | 1..615 | 18..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:30 Download gff for
BO06595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1057-PB | 1..615 | 18..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:06:17 Download gff for
BO06595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1054 | 13..638 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:18:22 Download gff for
BO06595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1054 | 13..638 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:18:22 Download gff for
BO06595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4642392..4642428 | 603..638 | 91 | -> | Minus |
3R | 4642569..4642658 | 513..602 | 100 | -> | Minus |
3R | 4642751..4643248 | 13..512 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:06:17 Download gff for
BO06595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 468114..468150 | 603..638 | 91 | -> | Minus |
arm_3R | 468291..468380 | 513..602 | 100 | -> | Minus |
arm_3R | 468473..468970 | 13..512 | 99 | | Minus |
BO06595.5prime Sequence
644 bp (643 high quality bases) assembled on 2005-12-03
> BO06595.5prime
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACGCAAGCTTTCTAGACC
BO06595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1057-PA | 615 | MED31-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
CG1057-PB | 615 | MED31-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 818 | CG1057-RC | 159..770 | 17..628 | 3060 | 100 | Plus |
MED31-RB | 823 | CG1057-RB | 164..775 | 17..628 | 3060 | 100 | Plus |
MED31-RA | 1098 | CG1057-RA | 439..1050 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643244 | 135..628 | 2470 | 100 | Plus |
3R | 32079331 | 3R | 4642569..4642658 | 45..134 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:04:24 has no hits.
BO06595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:11 Download gff for
BO06595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-PA | 1..615 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:31 Download gff for
BO06595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1057-PB | 1..615 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:39 Download gff for
BO06595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1054 | 9..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:37 Download gff for
BO06595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 430..1054 | 9..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:37 Download gff for
BO06595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4642392..4642428 | 9..44 | 91 | -> | Plus |
3R | 4642569..4642658 | 45..134 | 100 | -> | Plus |
3R | 4642751..4643248 | 135..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:39 Download gff for
BO06595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 468114..468150 | 9..44 | 91 | -> | Plus |
arm_3R | 468291..468380 | 45..134 | 100 | -> | Plus |
arm_3R | 468473..468970 | 135..634 | 99 | | Plus |
BO06595.complete Sequence
646 bp (646 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630455
> BO06595.complete
GAAGTTATCAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTA
TCGAGTCGGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTC
GTGCAGTGCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGG
ATTTTTCAAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACT
GGAAGGAGCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTAC
TTCCTCGATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTC
GCAGTGCTGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACT
ACACTCGCAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAG
CAACAACAGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGC
AGCAACGGGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAG
CTTCCACGGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAA
GCACAGCCTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATC
GGGGGCCAACATAAAACTAGAGTTAAACGCAAGCTTTCTAGACCAT
BO06595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 615 | CG1057-PC | 1..612 | 17..628 | 3060 | 100 | Plus |
MED31-RB | 615 | CG1057-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
MED31-RA | 615 | CG1057-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-RC | 818 | CG1057-RC | 159..770 | 17..628 | 3060 | 100 | Plus |
MED31-RB | 823 | CG1057-RB | 164..775 | 17..628 | 3060 | 100 | Plus |
MED31-RA | 1098 | CG1057-RA | 439..1050 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4642751..4643244 | 135..628 | 2470 | 100 | Plus |
3R | 32079331 | 3R | 4642569..4642658 | 45..134 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:53 has no hits.
BO06595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:39 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 1..615 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:04 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 144..768 | 9..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:08 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 439..1050 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:39 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RB | 144..768 | 9..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:05 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED31-RA | 439..1050 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:05 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4642401..4642428 | 17..44 | 100 | -> | Plus |
3R | 4642569..4642658 | 45..134 | 100 | -> | Plus |
3R | 4642751..4643244 | 135..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:08 Download gff for
BO06595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 468123..468150 | 17..44 | 100 | -> | Plus |
arm_3R | 468291..468380 | 45..134 | 100 | -> | Plus |
arm_3R | 468473..468966 | 135..630 | 99 | | Plus |
BO06595.pep Sequence
Translation from 16 to 646
> BO06595.pep
MAKMYGKGKTAIESEELQKRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQ
SFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKF
IDDQAILQWQHYTRKRIKLIENVTAAQQQQQQLQQQQQQANGMEAATGGE
SAAPTPNVNGSASTADSQQTSSALQPVQAQPGNPQQQQQINGVASGANIK
LELNASFLDH
BO06595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED31-PC | 204 | CG1057-PC | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PB | 204 | CG1057-PB | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PA | 204 | CG1057-PA | 1..204 | 1..204 | 1072 | 100 | Plus |
MED31-PD | 202 | CG1057-PD | 1..202 | 1..204 | 1043 | 98.5 | Plus |
MED31-PE | 199 | CG1057-PE | 6..199 | 11..204 | 1019 | 100 | Plus |