Clone BO06596 Report

Search the DGRC for BO06596

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:65
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCycC-RA
Protein status:BO06596.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO06596.3prime Sequence

832 bp (690 high quality bases) assembled on 2005-12-03

> BO06596.3prime
ATGGTCTAGAAAGCTTGCACGCTGAGGCGGTGGTTTCGGTTTCGGAATCT
TGGACAGCAGCATCTGAATCTCGTCCTTTTCCTTCCAGTCCTTCCACAAC
TCGTACAGATTTACAATGGCGCGCACGATCTCCTGGACCTTGTCTAAATC
AACATTCAATTCTGCGAACCACTGCTTCGTGGCGTCCTTTTGCAGGATGA
CGCAGGCGATTTGAAGGCAGGCTATAGCGATCTGGTAAGGAGGATAGAGC
AGGCAGACATCGGTGCGCAGGGAATCGTTTACGATACGCCAGCTCAGGGT
GAGCAACTGGTCCTCCTGGCCCATGTCCTGAACCAGCTGCAGCAGCGGTC
TGTACGGCTGGTAGACAATCAAGCAGCAATCCAGGTTCTCCAGCAGGTAA
AACTCGCACTCCAGGATGTGATTGGTGCGGTAGGGAAACTCCTGAGCGTA
CGCATAGCTGAACTTTGTCTTAATGGCCGACTGGCAGATCGAGATCAGTC
GTGAATTGGAAATGACACCGAACTCCTCCACCTTCGAGGCCAGCAAGATG
CAAGTGGGCGCCAGCAGCAGAGGATCGATGTTCTTCAGGGAGTTCCTCGC
ATAGAATCTCTTGAAGTAAACCGTCGCCGTGGCGATGACCTGTTGCCTCA
GCTTTAGCTGCTCGCCGAGCACCTGGATCACATTTGCGAAGAAAATAAAC
ACCTTTTGGTATTCATCCTCGTTAAGGGCCAACAAATCGTGCTGACGCTC
CCGGAGCAGATCGGGTTTGTCCAAATCCACTGCTGCGAGTGCGAACTCTG
CCAAAAAATGCCCGCCATGTCGACTGATAACT

BO06596.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7281-PA 804 CycC-RA 45..801 775..19 3785 100 Minus
CG7281-PA 804 CycC-RA 1..46 818..773 205 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 1142 CG7281-RA 145..949 822..19 3970 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14889470..14890061 232..822 2880 99.5 Plus
3R 32079331 3R 14889197..14889411 19..233 1075 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:05:10 has no hits.

BO06596.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:12 Download gff for BO06596.3prime
Subject Subject Range Query Range Percent Splice Strand
CycC-PA 1..804 18..818 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:32 Download gff for BO06596.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7281-PA 1..804 18..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:41 Download gff for BO06596.3prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..948 11..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:05 Download gff for BO06596.3prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 145..960 11..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:05 Download gff for BO06596.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14889186..14889409 11..231 98 <- Plus
3R 14889470..14890061 232..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:41 Download gff for BO06596.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10714908..10715131 11..231 98 <- Plus
arm_3R 10715192..10715783 232..822 99   Plus

BO06596.5prime Sequence

831 bp (755 high quality bases) assembled on 2005-12-03

> BO06596.5prime
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GAAGGAAAGGACGAGATTCAGATGCTGCTGTCCAAGATTTCGAAACCGAA
CCACCGCCTCAGCGTGCAAGCTTTCTAGACC

BO06596.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7281-PA 804 CycC-RA 1..742 17..758 3710 100 Plus
CG7281-PA 804 CycC-RA 741..785 756..800 200 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 1142 CG7281-RA 145..949 13..815 3945 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14889470..14890061 604..13 2945 99.8 Minus
3R 32079331 3R 14889197..14889411 815..603 960 98.6 Minus
Blast to na_te.dros performed on 2015-02-13 16:04:10 has no hits.

BO06596.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:13 Download gff for BO06596.5prime
Subject Subject Range Query Range Percent Splice Strand
CycC-PA 1..804 17..816 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:34 Download gff for BO06596.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7281-PA 1..804 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:21 Download gff for BO06596.5prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..948 13..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:49:46 Download gff for BO06596.5prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 145..960 13..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:49:46 Download gff for BO06596.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14889186..14889409 605..823 96 <- Minus
3R 14889470..14890061 13..604 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:21 Download gff for BO06596.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10714908..10715131 605..823 96 <- Minus
arm_3R 10715192..10715783 13..604 99   Minus

BO06596.complete Sequence

835 bp (835 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630456

> BO06596.complete
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GAAGGAAAAGGACGAGATTCAGATGCTGCTGTCCAAGATTCCGAAACCGA
AACCACCGCCTCAGCGTGCAAGCTTTCTAGACCAT

BO06596.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 804 CG7281-PA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 1142 CG7281-RA 145..949 13..817 4010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14889470..14890061 604..13 2945 99.8 Minus
3R 32079331 3R 14889197..14889411 817..603 1075 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:45:53 has no hits.

BO06596.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:37 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 1..804 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:21 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..948 13..825 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:25 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 137..937 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:37 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..948 13..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:12 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 149..949 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:12 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14889195..14889409 605..819 99 <- Minus
3R 14889470..14890057 17..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:25 Download gff for BO06596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10714917..10715131 605..819 99 <- Minus
arm_3R 10715192..10715779 17..604 100   Minus

BO06596.pep Sequence

Translation from 16 to 835

> BO06596.pep
MAGNFWQSSHSQQWILDKPDLLRERQHDLLALNEDEYQKVFIFFANVIQV
LGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEF
GVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCL
IVYQPYRPLLQLVQDMGQEDQLLTLSWRIVNDSLRTDVCLLYPPYQIAIA
CLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDE
IQMLLSKIPKPKPPPQRASFLDH

BO06596.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-PA 267 CG7281-PA 1..267 1..267 1398 100 Plus
CG16903-PA 560 CG16903-PA 106..332 32..250 209 27.7 Plus
CycK-PC 400 CG15218-PC 4..260 14..268 189 25.1 Plus
CycK-PB 400 CG15218-PB 4..260 14..268 189 25.1 Plus
CycK-PA 400 CG15218-PA 4..260 14..268 189 25.1 Plus