Clone Sequence Records
BO06596.3prime Sequence
832 bp (690 high quality bases) assembled on 2005-12-03
> BO06596.3prime
ATGGTCTAGAAAGCTTGCACGCTGAGGCGGTGGTTTCGGTTTCGGAATCT
TGGACAGCAGCATCTGAATCTCGTCCTTTTCCTTCCAGTCCTTCCACAAC
TCGTACAGATTTACAATGGCGCGCACGATCTCCTGGACCTTGTCTAAATC
AACATTCAATTCTGCGAACCACTGCTTCGTGGCGTCCTTTTGCAGGATGA
CGCAGGCGATTTGAAGGCAGGCTATAGCGATCTGGTAAGGAGGATAGAGC
AGGCAGACATCGGTGCGCAGGGAATCGTTTACGATACGCCAGCTCAGGGT
GAGCAACTGGTCCTCCTGGCCCATGTCCTGAACCAGCTGCAGCAGCGGTC
TGTACGGCTGGTAGACAATCAAGCAGCAATCCAGGTTCTCCAGCAGGTAA
AACTCGCACTCCAGGATGTGATTGGTGCGGTAGGGAAACTCCTGAGCGTA
CGCATAGCTGAACTTTGTCTTAATGGCCGACTGGCAGATCGAGATCAGTC
GTGAATTGGAAATGACACCGAACTCCTCCACCTTCGAGGCCAGCAAGATG
CAAGTGGGCGCCAGCAGCAGAGGATCGATGTTCTTCAGGGAGTTCCTCGC
ATAGAATCTCTTGAAGTAAACCGTCGCCGTGGCGATGACCTGTTGCCTCA
GCTTTAGCTGCTCGCCGAGCACCTGGATCACATTTGCGAAGAAAATAAAC
ACCTTTTGGTATTCATCCTCGTTAAGGGCCAACAAATCGTGCTGACGCTC
CCGGAGCAGATCGGGTTTGTCCAAATCCACTGCTGCGAGTGCGAACTCTG
CCAAAAAATGCCCGCCATGTCGACTGATAACT
BO06596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7281-PA | 804 | CycC-RA | 45..801 | 775..19 | 3785 | 100 | Minus |
CG7281-PA | 804 | CycC-RA | 1..46 | 818..773 | 205 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 1142 | CG7281-RA | 145..949 | 822..19 | 3970 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14889470..14890061 | 232..822 | 2880 | 99.5 | Plus |
3R | 32079331 | 3R | 14889197..14889411 | 19..233 | 1075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:05:10 has no hits.
BO06596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:12 Download gff for
BO06596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-PA | 1..804 | 18..818 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:32 Download gff for
BO06596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7281-PA | 1..804 | 18..818 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:41 Download gff for
BO06596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..948 | 11..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:05 Download gff for
BO06596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 145..960 | 11..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:05 Download gff for
BO06596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14889186..14889409 | 11..231 | 98 | <- | Plus |
3R | 14889470..14890061 | 232..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:41 Download gff for
BO06596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10714908..10715131 | 11..231 | 98 | <- | Plus |
arm_3R | 10715192..10715783 | 232..822 | 99 | | Plus |
BO06596.5prime Sequence
831 bp (755 high quality bases) assembled on 2005-12-03
> BO06596.5prime
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GAAGGAAAGGACGAGATTCAGATGCTGCTGTCCAAGATTTCGAAACCGAA
CCACCGCCTCAGCGTGCAAGCTTTCTAGACC
BO06596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7281-PA | 804 | CycC-RA | 1..742 | 17..758 | 3710 | 100 | Plus |
CG7281-PA | 804 | CycC-RA | 741..785 | 756..800 | 200 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 1142 | CG7281-RA | 145..949 | 13..815 | 3945 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14889470..14890061 | 604..13 | 2945 | 99.8 | Minus |
3R | 32079331 | 3R | 14889197..14889411 | 815..603 | 960 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:04:10 has no hits.
BO06596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:13 Download gff for
BO06596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-PA | 1..804 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:34 Download gff for
BO06596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7281-PA | 1..804 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:08:21 Download gff for
BO06596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..948 | 13..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:49:46 Download gff for
BO06596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 145..960 | 13..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:49:46 Download gff for
BO06596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14889186..14889409 | 605..823 | 96 | <- | Minus |
3R | 14889470..14890061 | 13..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:08:21 Download gff for
BO06596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10714908..10715131 | 605..823 | 96 | <- | Minus |
arm_3R | 10715192..10715783 | 13..604 | 99 | | Minus |
BO06596.complete Sequence
835 bp (835 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630456
> BO06596.complete
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GAAGGAAAAGGACGAGATTCAGATGCTGCTGTCCAAGATTCCGAAACCGA
AACCACCGCCTCAGCGTGCAAGCTTTCTAGACCAT
BO06596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 804 | CG7281-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 1142 | CG7281-RA | 145..949 | 13..817 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14889470..14890061 | 604..13 | 2945 | 99.8 | Minus |
3R | 32079331 | 3R | 14889197..14889411 | 817..603 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:45:53 has no hits.
BO06596.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:37 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 1..804 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:21 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..948 | 13..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:25 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 137..937 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:37 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..948 | 13..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:12 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 149..949 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:12 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14889195..14889409 | 605..819 | 99 | <- | Minus |
3R | 14889470..14890057 | 17..604 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:25 Download gff for
BO06596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10714917..10715131 | 605..819 | 99 | <- | Minus |
arm_3R | 10715192..10715779 | 17..604 | 100 | | Minus |
BO06596.pep Sequence
Translation from 16 to 835
> BO06596.pep
MAGNFWQSSHSQQWILDKPDLLRERQHDLLALNEDEYQKVFIFFANVIQV
LGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEF
GVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCL
IVYQPYRPLLQLVQDMGQEDQLLTLSWRIVNDSLRTDVCLLYPPYQIAIA
CLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDE
IQMLLSKIPKPKPPPQRASFLDH
BO06596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-PA | 267 | CG7281-PA | 1..267 | 1..267 | 1398 | 100 | Plus |
CG16903-PA | 560 | CG16903-PA | 106..332 | 32..250 | 209 | 27.7 | Plus |
CycK-PC | 400 | CG15218-PC | 4..260 | 14..268 | 189 | 25.1 | Plus |
CycK-PB | 400 | CG15218-PB | 4..260 | 14..268 | 189 | 25.1 | Plus |
CycK-PA | 400 | CG15218-PA | 4..260 | 14..268 | 189 | 25.1 | Plus |