Clone BO06605 Report

Search the DGRC for BO06605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG1532-RA
Protein status:BO06605.pep: validated full length
Sequenced Size:898

Clone Sequence Records

BO06605.3prime Sequence

814 bp (804 high quality bases) assembled on 2005-12-03

> BO06605.3prime
ATGGTCTAGAAAGCTTGCTTTCGGTTGGAAGGGATCCTTTTCGATGTTTC
GATCCAGTCGCTTATCGCCATCGGACTCCACCTGAGATAGCTGGCCGAAG
CCCTCCTCGTCGACAAAGCAGATCTCATGACCATCGGGGTCACCGAGAAT
TACCACCGTAACGGTGGCCTTTCCTGGCGTATCCAGGGTAATCAGAGGTG
TTAGAATGGCCCCGCCAGCTGCTTTAACCGCTTCTTGGAGAGGTGGCTGC
TGGGCCGCCGGAATGGCAAAGGCGATTCGTCCATAGGCCTTAGCTCTATT
AATTGGCTCTGAGATCTGGGTGATCTCCAGTGAAGCCTGCTGTTCACCGT
AACTCAAACGCACGCTTGCTTCGTTCTCCTCGAGAACTTTCAGTTGCAGC
AAATCGTGCCAGTATTTGCGCGAGTTTTGAAGATTGCTCACATTAAGCTC
CACCGATTGGACAGGATCAGAGCTGGCAGAGGCCTGATCGATCACATAGA
ACTTGTAGCCATCGGGCGAGGTCAGCAGACTACCGGCTTTTCCAGACACC
TGTGTCACAGGATACGAGTGCTCGGCGGCGCGGGAAAGGATATCCTTGGA
GTGTATGGTCACGCCCCCAAAATCATTGCCCATTTCGTAGCTGCTCACTC
CATAGTTATACGTGAGTTCGATGACGAAATGCGAACTTTCGGGTCCATAA
CCCACCATTGTTTTGCTCCACCGATTGTCATAGGGCCCGTTGCAAGCTGC
GTCGCATCCCTCCTTGAACTCCTCATGCCGCAGCACCGTCATTCCCAAGA
TTTGCCGAAAGAAG

BO06605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PA 867 CG1532-RA 69..864 814..19 3980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 1236 CG1532-RB 155..950 814..19 3980 100 Minus
CG1532-RA 1073 CG1532-RA 155..950 814..19 3980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026411..21027022 19..630 3060 100 Plus
X 23542271 X 21027737..21027845 629..737 545 100 Plus
X 23542271 X 21027902..21027953 736..787 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:06:31 has no hits.

BO06605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:20 Download gff for BO06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 69..867 16..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:44 Download gff for BO06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 69..867 16..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:44 Download gff for BO06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 155..958 9..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:48 Download gff for BO06605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 155..958 9..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:48 Download gff for BO06605.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21026403..21027021 9..629 99 <- Plus
X 21027738..21027844 630..736 100 <- Plus
X 21027903..21027952 737..786 100 <- Plus
X 21028180..21028207 787..814 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:44 Download gff for BO06605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897430..20898048 9..629 99 <- Plus
arm_X 20898765..20898871 630..736 100 <- Plus
arm_X 20898930..20898979 737..786 100 <- Plus
arm_X 20899207..20899234 787..814 100   Plus

BO06605.5prime Sequence

880 bp (790 high quality bases) assembled on 2005-12-03

> BO06605.5prime
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
AACATCGAAAAGGATCCCTTCCNANCGAAA

BO06605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PA 867 CG1532-RA 1..864 17..880 4282 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 1236 CG1532-RB 87..950 17..880 4298 99.8 Plus
CG1532-RA 1073 CG1532-RA 87..950 17..880 4298 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026411..21027022 880..269 3038 99.7 Minus
X 23542271 X 21027737..21027845 270..162 545 100 Minus
X 23542271 X 21028178..21028275 114..17 490 100 Minus
X 23542271 X 21027902..21027953 163..112 260 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:33:49 has no hits.

BO06605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:21 Download gff for BO06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:45 Download gff for BO06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:58 Download gff for BO06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..947 17..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:05 Download gff for BO06605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..947 17..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:05 Download gff for BO06605.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21026414..21027021 270..877 99 <- Minus
X 21027738..21027844 163..269 100 <- Minus
X 21027903..21027952 113..162 100 <- Minus
X 21028180..21028275 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:58 Download gff for BO06605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897441..20898048 270..877 99 <- Minus
arm_X 20898765..20898871 163..269 100 <- Minus
arm_X 20898930..20898979 113..162 100 <- Minus
arm_X 20899207..20899302 17..112 100   Minus

BO06605.complete Sequence

898 bp (898 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ630457

> BO06605.complete
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
AACATCGAAAAGGATCCCTTCCAACCGAAAGCAAGCTTTCTAGACCAT

BO06605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 867 CG1532-PB 1..864 17..880 4320 100 Plus
CG1532-RA 867 CG1532-PA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RB 1236 CG1532-RB 87..950 17..880 4320 100 Plus
CG1532-RA 1073 CG1532-RA 87..950 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026411..21027022 880..269 3060 100 Minus
X 23542271 X 21027737..21027845 270..162 545 100 Minus
X 23542271 X 21028178..21028275 114..17 490 100 Minus
X 23542271 X 21027902..21027953 163..112 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:25 has no hits.

BO06605.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:28 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:09 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 72..943 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:56 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..950 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:29 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 72..943 17..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:13 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 87..950 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:13 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
X 21026407..21027021 270..882 99 <- Minus
X 21027738..21027844 163..269 100 <- Minus
X 21027903..21027952 113..162 100 <- Minus
X 21028180..21028275 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:56 Download gff for BO06605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897434..20898048 270..882 99 <- Minus
arm_X 20898765..20898871 163..269 100 <- Minus
arm_X 20898930..20898979 113..162 100 <- Minus
arm_X 20899207..20899302 17..112 100   Minus

BO06605.pep Sequence

Translation from 16 to 898

> BO06605.pep
MSAISGRALHYVFKIGDRAKNAFFFRQILGMTVLRHEEFKEGCDAACNGP
YDNRWSKTMVGYGPESSHFVIELTYNYGVSSYEMGNDFGGVTIHSKDILS
RAAEHSYPVTQVSGKAGSLLTSPDGYKFYVIDQASASSDPVQSVELNVSN
LQNSRKYWHDLLQLKVLEENEASVRLSYGEQQASLEITQISEPINRAKAY
GRIAFAIPAAQQPPLQEAVKAAGGAILTPLITLDTPGKATVTVVILGDPD
GHEICFVDEEGFGQLSQVESDGDKRLDRNIEKDPFQPKASFLDH

BO06605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PB 288 CG1532-PB 1..288 1..288 1493 100 Plus
CG1532-PA 288 CG1532-PA 1..288 1..288 1493 100 Plus