Clone Sequence Records
BO06605.3prime Sequence
814 bp (804 high quality bases) assembled on 2005-12-03
> BO06605.3prime
ATGGTCTAGAAAGCTTGCTTTCGGTTGGAAGGGATCCTTTTCGATGTTTC
GATCCAGTCGCTTATCGCCATCGGACTCCACCTGAGATAGCTGGCCGAAG
CCCTCCTCGTCGACAAAGCAGATCTCATGACCATCGGGGTCACCGAGAAT
TACCACCGTAACGGTGGCCTTTCCTGGCGTATCCAGGGTAATCAGAGGTG
TTAGAATGGCCCCGCCAGCTGCTTTAACCGCTTCTTGGAGAGGTGGCTGC
TGGGCCGCCGGAATGGCAAAGGCGATTCGTCCATAGGCCTTAGCTCTATT
AATTGGCTCTGAGATCTGGGTGATCTCCAGTGAAGCCTGCTGTTCACCGT
AACTCAAACGCACGCTTGCTTCGTTCTCCTCGAGAACTTTCAGTTGCAGC
AAATCGTGCCAGTATTTGCGCGAGTTTTGAAGATTGCTCACATTAAGCTC
CACCGATTGGACAGGATCAGAGCTGGCAGAGGCCTGATCGATCACATAGA
ACTTGTAGCCATCGGGCGAGGTCAGCAGACTACCGGCTTTTCCAGACACC
TGTGTCACAGGATACGAGTGCTCGGCGGCGCGGGAAAGGATATCCTTGGA
GTGTATGGTCACGCCCCCAAAATCATTGCCCATTTCGTAGCTGCTCACTC
CATAGTTATACGTGAGTTCGATGACGAAATGCGAACTTTCGGGTCCATAA
CCCACCATTGTTTTGCTCCACCGATTGTCATAGGGCCCGTTGCAAGCTGC
GTCGCATCCCTCCTTGAACTCCTCATGCCGCAGCACCGTCATTCCCAAGA
TTTGCCGAAAGAAG
BO06605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-PA | 867 | CG1532-RA | 69..864 | 814..19 | 3980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 1236 | CG1532-RB | 155..950 | 814..19 | 3980 | 100 | Minus |
CG1532-RA | 1073 | CG1532-RA | 155..950 | 814..19 | 3980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21026411..21027022 | 19..630 | 3060 | 100 | Plus |
X | 23542271 | X | 21027737..21027845 | 629..737 | 545 | 100 | Plus |
X | 23542271 | X | 21027902..21027953 | 736..787 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:06:31 has no hits.
BO06605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:20 Download gff for
BO06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 69..867 | 16..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:44 Download gff for
BO06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 69..867 | 16..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:42:44 Download gff for
BO06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 155..958 | 9..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:48 Download gff for
BO06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 155..958 | 9..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:48 Download gff for
BO06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21026403..21027021 | 9..629 | 99 | <- | Plus |
X | 21027738..21027844 | 630..736 | 100 | <- | Plus |
X | 21027903..21027952 | 737..786 | 100 | <- | Plus |
X | 21028180..21028207 | 787..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:42:44 Download gff for
BO06605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20897430..20898048 | 9..629 | 99 | <- | Plus |
arm_X | 20898765..20898871 | 630..736 | 100 | <- | Plus |
arm_X | 20898930..20898979 | 737..786 | 100 | <- | Plus |
arm_X | 20899207..20899234 | 787..814 | 100 | | Plus |
BO06605.5prime Sequence
880 bp (790 high quality bases) assembled on 2005-12-03
> BO06605.5prime
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
AACATCGAAAAGGATCCCTTCCNANCGAAA
BO06605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-PA | 867 | CG1532-RA | 1..864 | 17..880 | 4282 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 1236 | CG1532-RB | 87..950 | 17..880 | 4298 | 99.8 | Plus |
CG1532-RA | 1073 | CG1532-RA | 87..950 | 17..880 | 4298 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21026411..21027022 | 880..269 | 3038 | 99.7 | Minus |
X | 23542271 | X | 21027737..21027845 | 270..162 | 545 | 100 | Minus |
X | 23542271 | X | 21028178..21028275 | 114..17 | 490 | 100 | Minus |
X | 23542271 | X | 21027902..21027953 | 163..112 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:33:49 has no hits.
BO06605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:21 Download gff for
BO06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:45 Download gff for
BO06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:58 Download gff for
BO06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..947 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:05 Download gff for
BO06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..947 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:05 Download gff for
BO06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21026414..21027021 | 270..877 | 99 | <- | Minus |
X | 21027738..21027844 | 163..269 | 100 | <- | Minus |
X | 21027903..21027952 | 113..162 | 100 | <- | Minus |
X | 21028180..21028275 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:58 Download gff for
BO06605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20897441..20898048 | 270..877 | 99 | <- | Minus |
arm_X | 20898765..20898871 | 163..269 | 100 | <- | Minus |
arm_X | 20898930..20898979 | 113..162 | 100 | <- | Minus |
arm_X | 20899207..20899302 | 17..112 | 100 | | Minus |
BO06605.complete Sequence
898 bp (898 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630457
> BO06605.complete
GAAGTTATCAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATG
TGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATC
TTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGC
AGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTT
ATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGA
GTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTC
CAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGG
TGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTC
TATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGA
GCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGC
TGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTAC
GGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAA
TAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGC
AGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACA
CCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAAT
TCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCT
TCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGA
AACATCGAAAAGGATCCCTTCCAACCGAAAGCAAGCTTTCTAGACCAT
BO06605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 867 | CG1532-PB | 1..864 | 17..880 | 4320 | 100 | Plus |
CG1532-RA | 867 | CG1532-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-RB | 1236 | CG1532-RB | 87..950 | 17..880 | 4320 | 100 | Plus |
CG1532-RA | 1073 | CG1532-RA | 87..950 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21026411..21027022 | 880..269 | 3060 | 100 | Minus |
X | 23542271 | X | 21027737..21027845 | 270..162 | 545 | 100 | Minus |
X | 23542271 | X | 21028178..21028275 | 114..17 | 490 | 100 | Minus |
X | 23542271 | X | 21027902..21027953 | 163..112 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:25 has no hits.
BO06605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:28 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:09 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 72..943 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:56 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..950 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:29 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 72..943 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:13 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1532-RA | 87..950 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:13 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21026407..21027021 | 270..882 | 99 | <- | Minus |
X | 21027738..21027844 | 163..269 | 100 | <- | Minus |
X | 21027903..21027952 | 113..162 | 100 | <- | Minus |
X | 21028180..21028275 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:56 Download gff for
BO06605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20897434..20898048 | 270..882 | 99 | <- | Minus |
arm_X | 20898765..20898871 | 163..269 | 100 | <- | Minus |
arm_X | 20898930..20898979 | 113..162 | 100 | <- | Minus |
arm_X | 20899207..20899302 | 17..112 | 100 | | Minus |
BO06605.pep Sequence
Translation from 16 to 898
> BO06605.pep
MSAISGRALHYVFKIGDRAKNAFFFRQILGMTVLRHEEFKEGCDAACNGP
YDNRWSKTMVGYGPESSHFVIELTYNYGVSSYEMGNDFGGVTIHSKDILS
RAAEHSYPVTQVSGKAGSLLTSPDGYKFYVIDQASASSDPVQSVELNVSN
LQNSRKYWHDLLQLKVLEENEASVRLSYGEQQASLEITQISEPINRAKAY
GRIAFAIPAAQQPPLQEAVKAAGGAILTPLITLDTPGKATVTVVILGDPD
GHEICFVDEEGFGQLSQVESDGDKRLDRNIEKDPFQPKASFLDH
BO06605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1532-PB | 288 | CG1532-PB | 1..288 | 1..288 | 1493 | 100 | Plus |
CG1532-PA | 288 | CG1532-PA | 1..288 | 1..288 | 1493 | 100 | Plus |