Clone Sequence Records
BO06607.3prime Sequence
959 bp (882 high quality bases) assembled on 2005-12-03
> BO06607.3prime
ATGGTCTAGAAAGCTTGCCAGAATGGGGTAGCTGCACTCGCTGGCGATGC
CGCAGAATCCACCTGCATTCCGGAGGATGCGCATAAAGCCGCCCTCGCCC
CAATTCTGAGAGTACGAGTTCTTGATGATCCAGTAGTCGCGTCCATTTTC
CGTTCCATAGCCCACCACGGTTACCGAGTGATTCAGTTCGCCCTGATTGC
ACTCCTCGTCCTCGTAGATGCCACCGCTGTACTGCTCAAACGAAATGGTG
TCCGCGTTCATGGAGCACGCCAACGGTCCCAACGTGGCAATCACCTCCTT
CATCTTCTCCTCATCCCCGGGAGTAATGGTGGCATAATCGCGAATTTTCA
CCAGACTCTCGCGCGGTGGACGTCCGGCGGTTTCGTTCTGACGGCACTGC
ATCTCCGTCTGTGTGTACGGATATTTGTTGGCCAGCGTTACACCGTGATC
GCGTATGTACTCGAAACCGTACTCCTGGAAGCCACCGTCACAGCCCATGT
TGCCGTAGTCATCGGCACAGTCCACCAGATTCTGCTGCGACAGCGAGGCC
AGCACTCCAGTCCGCCGGAATAGATGTCCTTCGAGCGCTCCTGTGGTGGC
GAACGACCAGCAGGCACCGCATCCCACACCCTGGAATCCCGGTGGCGTCA
CTCCGCCCTTCTCGCGCCAATCGAACATCTCGGGAAGATTGGCACTCGCC
GGATTCCTGGCAGTCACAAAGTTGATATGGCCATTCGTATATCTCTCGCC
AAATTCGGAGATTTTGGAGCCCAGCAAGGTGGCTATCTCCTTTCTGGTCA
TGTCGGCCAGCGTATTGACGCCCAGCCGGAATCCGGACACGCCGTTGTCG
GCGTTCTTATTGCTCAGCGTGATCAGCGACATCTTGGCCGCGAAGATGCT
CTCGCGATAGACTCGCTCCTCATCCGAGTACACCTTGCCCGTCTGCCGGA
GGAGGTCGT
BO06607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-PA | 1059 | CG6347-RA | 116..1056 | 959..19 | 4680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1312 | CG6347-RA | 224..1164 | 959..19 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13838489..13839215 | 745..19 | 3635 | 100 | Minus |
2R | 25286936 | 2R | 13837834..13838048 | 959..745 | 1060 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:15:44 has no hits.
BO06607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:24 Download gff for
BO06607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 116..1059 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:47 Download gff for
BO06607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 116..1059 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:42 Download gff for
BO06607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 224..1170 | 12..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:50 Download gff for
BO06607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 224..1170 | 12..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:50 Download gff for
BO06607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13837834..13838047 | 746..959 | 99 | -> | Minus |
2R | 13838489..13839221 | 12..745 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:42 Download gff for
BO06607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9725339..9725552 | 746..959 | 99 | -> | Minus |
arm_2R | 9725994..9726726 | 12..745 | 99 | | Minus |
BO06607.5prime Sequence
914 bp (784 high quality bases) assembled on 2005-12-03
> BO06607.5prime
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACGAGGAGTGCAATCAGGG
CGAACTGAATCACT
BO06607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-PA | 1059 | CG6347-RA | 1..898 | 17..914 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1312 | CG6347-RA | 109..1006 | 17..914 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13838489..13839057 | 346..914 | 2845 | 100 | Plus |
2R | 25286936 | 2R | 13837719..13838048 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:24:34 has no hits.
BO06607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:25 Download gff for
BO06607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:49 Download gff for
BO06607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-PA | 1..898 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:34 Download gff for
BO06607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..1006 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:55 Download gff for
BO06607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..1006 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:55 Download gff for
BO06607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13837714..13838047 | 12..345 | 99 | -> | Plus |
2R | 13838489..13839057 | 346..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:34 Download gff for
BO06607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9725219..9725552 | 12..345 | 99 | -> | Plus |
arm_2R | 9725994..9726562 | 346..914 | 100 | | Plus |
BO06607.complete Sequence
1090 bp (1090 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ638642
> BO06607.complete
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACGAGGAGTGCAATCAGGG
CGAACTGAATCACTCGGTAACCGTGGTGGGCTATGGAACGGAAAATGGAC
GCGACTACTGGATCATCAAGAACTCGTACTCTCAGAATTGGGGCGAGGGC
GGCTTTATGCGCATCCTCCGGAATGCAGGTGGATTCTGCGGCATCGCCAG
CGAGTGCAGCTACCCCATTCTGGCAAGCTTTCTAGACCAT
BO06607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1059 | CG6347-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-RA | 1312 | CG6347-RA | 109..1164 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13838489..13839215 | 346..1072 | 3635 | 100 | Plus |
2R | 25286936 | 2R | 13837719..13838048 | 17..346 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:00:47 has no hits.
BO06607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:15 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 1..1059 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:52 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 107..1168 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:17 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..1164 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:15 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 107..1168 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:00 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6347-RA | 109..1164 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:00 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13837719..13838047 | 17..345 | 100 | -> | Plus |
2R | 13838489..13839215 | 346..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:17 Download gff for
BO06607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9725224..9725552 | 17..345 | 100 | -> | Plus |
arm_2R | 9725994..9726720 | 346..1074 | 99 | | Plus |
BO06607.pep Sequence
Translation from 16 to 1090
> BO06607.pep
MRMCSTMWLQMTLGLALLGAVSLQQLQSFPKLCDVQNFDDFLRQTGKVYS
DEERVYRESIFAAKMSLITLSNKNADNGVSGFRLGVNTLADMTRKEIATL
LGSKISEFGERYTNGHINFVTARNPASANLPEMFDWREKGGVTPPGFQGV
GCGACWSFATTGALEGHLFRRTGVLASLSQQNLVDCADDYGNMGCDGGFQ
EYGFEYIRDHGVTLANKYPYTQTEMQCRQNETAGRPPRESLVKIRDYATI
TPGDEEKMKEVIATLGPLACSMNADTISFEQYSGGIYEDEECNQGELNHS
VTVVGYGTENGRDYWIIKNSYSQNWGEGGFMRILRNAGGFCGIASECSYP
ILASFLDH
BO06607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6347-PA | 352 | CG6347-PA | 1..352 | 1..352 | 1883 | 100 | Plus |
CG4847-PE | 390 | CG4847-PE | 74..390 | 30..352 | 733 | 46.2 | Plus |
CG4847-PC | 390 | CG4847-PC | 74..390 | 30..352 | 733 | 46.2 | Plus |
CG4847-PA | 390 | CG4847-PA | 74..390 | 30..352 | 733 | 46.2 | Plus |
CG4847-PD | 420 | CG4847-PD | 104..420 | 30..352 | 733 | 46.2 | Plus |