Clone BO06607 Report

Search the DGRC for BO06607

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:66
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG6347-RA
Protein status:BO06607.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO06607.3prime Sequence

959 bp (882 high quality bases) assembled on 2005-12-03

> BO06607.3prime
ATGGTCTAGAAAGCTTGCCAGAATGGGGTAGCTGCACTCGCTGGCGATGC
CGCAGAATCCACCTGCATTCCGGAGGATGCGCATAAAGCCGCCCTCGCCC
CAATTCTGAGAGTACGAGTTCTTGATGATCCAGTAGTCGCGTCCATTTTC
CGTTCCATAGCCCACCACGGTTACCGAGTGATTCAGTTCGCCCTGATTGC
ACTCCTCGTCCTCGTAGATGCCACCGCTGTACTGCTCAAACGAAATGGTG
TCCGCGTTCATGGAGCACGCCAACGGTCCCAACGTGGCAATCACCTCCTT
CATCTTCTCCTCATCCCCGGGAGTAATGGTGGCATAATCGCGAATTTTCA
CCAGACTCTCGCGCGGTGGACGTCCGGCGGTTTCGTTCTGACGGCACTGC
ATCTCCGTCTGTGTGTACGGATATTTGTTGGCCAGCGTTACACCGTGATC
GCGTATGTACTCGAAACCGTACTCCTGGAAGCCACCGTCACAGCCCATGT
TGCCGTAGTCATCGGCACAGTCCACCAGATTCTGCTGCGACAGCGAGGCC
AGCACTCCAGTCCGCCGGAATAGATGTCCTTCGAGCGCTCCTGTGGTGGC
GAACGACCAGCAGGCACCGCATCCCACACCCTGGAATCCCGGTGGCGTCA
CTCCGCCCTTCTCGCGCCAATCGAACATCTCGGGAAGATTGGCACTCGCC
GGATTCCTGGCAGTCACAAAGTTGATATGGCCATTCGTATATCTCTCGCC
AAATTCGGAGATTTTGGAGCCCAGCAAGGTGGCTATCTCCTTTCTGGTCA
TGTCGGCCAGCGTATTGACGCCCAGCCGGAATCCGGACACGCCGTTGTCG
GCGTTCTTATTGCTCAGCGTGATCAGCGACATCTTGGCCGCGAAGATGCT
CTCGCGATAGACTCGCTCCTCATCCGAGTACACCTTGCCCGTCTGCCGGA
GGAGGTCGT

BO06607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-PA 1059 CG6347-RA 116..1056 959..19 4680 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1312 CG6347-RA 224..1164 959..19 4690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13838489..13839215 745..19 3635 100 Minus
2R 25286936 2R 13837834..13838048 959..745 1060 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 01:15:44 has no hits.

BO06607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:24 Download gff for BO06607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 116..1059 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:47 Download gff for BO06607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 116..1059 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:42 Download gff for BO06607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 224..1170 12..959 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:50 Download gff for BO06607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 224..1170 12..959 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:50 Download gff for BO06607.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13837834..13838047 746..959 99 -> Minus
2R 13838489..13839221 12..745 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:42 Download gff for BO06607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9725339..9725552 746..959 99 -> Minus
arm_2R 9725994..9726726 12..745 99   Minus

BO06607.5prime Sequence

914 bp (784 high quality bases) assembled on 2005-12-03

> BO06607.5prime
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACGAGGAGTGCAATCAGGG
CGAACTGAATCACT

BO06607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-PA 1059 CG6347-RA 1..898 17..914 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1312 CG6347-RA 109..1006 17..914 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13838489..13839057 346..914 2845 100 Plus
2R 25286936 2R 13837719..13838048 17..346 1650 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:24:34 has no hits.

BO06607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:25 Download gff for BO06607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:49 Download gff for BO06607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-PA 1..898 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:17:34 Download gff for BO06607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..1006 17..914 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:55 Download gff for BO06607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..1006 17..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:55 Download gff for BO06607.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13837714..13838047 12..345 99 -> Plus
2R 13838489..13839057 346..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:17:34 Download gff for BO06607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9725219..9725552 12..345 99 -> Plus
arm_2R 9725994..9726562 346..914 100   Plus

BO06607.complete Sequence

1090 bp (1090 high quality bases) assembled on 2005-11-29

GenBank Submission: FJ638642

> BO06607.complete
GAAGTTATCAGTCGACATGCGGATGTGCTCAACGATGTGGCTGCAGATGA
CGCTGGGACTGGCCCTGCTGGGTGCTGTGTCATTGCAGCAACTGCAGTCG
TTTCCCAAGCTCTGCGATGTGCAAAACTTCGACGACTTCCTCCGGCAGAC
GGGCAAGGTGTACTCGGATGAGGAGCGAGTCTATCGCGAGAGCATCTTCG
CGGCCAAGATGTCGCTGATCACGCTGAGCAATAAGAACGCCGACAACGGC
GTGTCCGGATTCCGGCTGGGCGTCAATACGCTGGCCGACATGACCAGAAA
GGAGATAGCCACCTTGCTGGGCTCCAAAATCTCCGAATTTGGCGAGAGAT
ATACGAATGGCCATATCAACTTTGTGACTGCCAGGAATCCGGCGAGTGCC
AATCTTCCCGAGATGTTCGATTGGCGCGAGAAGGGCGGAGTGACGCCACC
GGGATTCCAGGGTGTGGGATGCGGTGCCTGCTGGTCGTTCGCCACCACAG
GAGCGCTCGAAGGACATCTATTCCGGCGGACTGGAGTGCTGGCCTCGCTG
TCGCAGCAGAATCTGGTGGACTGTGCCGATGACTACGGCAACATGGGCTG
TGACGGTGGCTTCCAGGAGTACGGTTTCGAGTACATACGCGATCACGGTG
TAACGCTGGCCAACAAATATCCGTACACACAGACGGAGATGCAGTGCCGT
CAGAACGAAACCGCCGGACGTCCACCGCGCGAGAGTCTGGTGAAAATTCG
CGATTATGCCACCATTACTCCCGGGGATGAGGAGAAGATGAAGGAGGTGA
TTGCCACGTTGGGACCGTTGGCGTGCTCCATGAACGCGGACACCATTTCG
TTTGAGCAGTACAGCGGTGGCATCTACGAGGACGAGGAGTGCAATCAGGG
CGAACTGAATCACTCGGTAACCGTGGTGGGCTATGGAACGGAAAATGGAC
GCGACTACTGGATCATCAAGAACTCGTACTCTCAGAATTGGGGCGAGGGC
GGCTTTATGCGCATCCTCCGGAATGCAGGTGGATTCTGCGGCATCGCCAG
CGAGTGCAGCTACCCCATTCTGGCAAGCTTTCTAGACCAT

BO06607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1059 CG6347-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-RA 1312 CG6347-RA 109..1164 17..1072 5280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13838489..13839215 346..1072 3635 100 Plus
2R 25286936 2R 13837719..13838048 17..346 1650 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:00:47 has no hits.

BO06607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:15 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 1..1059 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:52 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 107..1168 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:17 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..1164 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:15 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 107..1168 17..1079 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:00 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
CG6347-RA 109..1164 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:00 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13837719..13838047 17..345 100 -> Plus
2R 13838489..13839215 346..1074 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:17 Download gff for BO06607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9725224..9725552 17..345 100 -> Plus
arm_2R 9725994..9726720 346..1074 99   Plus

BO06607.pep Sequence

Translation from 16 to 1090

> BO06607.pep
MRMCSTMWLQMTLGLALLGAVSLQQLQSFPKLCDVQNFDDFLRQTGKVYS
DEERVYRESIFAAKMSLITLSNKNADNGVSGFRLGVNTLADMTRKEIATL
LGSKISEFGERYTNGHINFVTARNPASANLPEMFDWREKGGVTPPGFQGV
GCGACWSFATTGALEGHLFRRTGVLASLSQQNLVDCADDYGNMGCDGGFQ
EYGFEYIRDHGVTLANKYPYTQTEMQCRQNETAGRPPRESLVKIRDYATI
TPGDEEKMKEVIATLGPLACSMNADTISFEQYSGGIYEDEECNQGELNHS
VTVVGYGTENGRDYWIIKNSYSQNWGEGGFMRILRNAGGFCGIASECSYP
ILASFLDH

BO06607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6347-PA 352 CG6347-PA 1..352 1..352 1883 100 Plus
CG4847-PE 390 CG4847-PE 74..390 30..352 733 46.2 Plus
CG4847-PC 390 CG4847-PC 74..390 30..352 733 46.2 Plus
CG4847-PA 390 CG4847-PA 74..390 30..352 733 46.2 Plus
CG4847-PD 420 CG4847-PD 104..420 30..352 733 46.2 Plus