Clone Sequence Records
BO06608.3prime Sequence
806 bp (784 high quality bases) assembled on 2005-12-03
> BO06608.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGGCCTTTTTGTCGGTTTCCTTCTCCG
GTTCACTTTCTGTGGTCTCGTCCTCTTCCTCATCATCATCATCGTCTTCA
TCGCTTTCATCATCGTAGTCTCCATCGGACTCATCTTCATCGTCATCACC
CCCGTAGGAGTAGCCCCCACTGGCGGCGCCACCATAATAGCCACTGCCAC
CGGCTCCATAGTATCCACCGTATCCCTCCTCGTCGTCGCTGTTGCCTCCT
TGTTGCTGTCGCCCGAATTTGTGCGACCGCGTGGACATGCTGAGGTCCTT
GGTCACCGAGGTATCGTAGTTGCACTTGGGGCATGGAATTGGCTTGTTCT
TGTCGTACTTGAAGCCCTTGCGACGCACGTGATCCTCGCAGTAACAGGTC
TTGCAGCGCAGGCAGGAGTATTGACCCAGCTTGTTGCACGATTGACACTT
GTAGTTCTCCGACTCCAGCACCTGACAGCTGGCCTGGTGCTCGAACTGAT
CGTCCTCGCACAGGAATCCGTTGCAGAAGGAGCACTTGAAGATGCGCCCA
CCGTGCTCCCAGACACCGCGTTCGCACTCCAGGCAGGTCGCATTCTGCAG
CGGACACGTGCAGGCGTGGTTTTGGAGACACTTGCGTCCGTGGCAAACCC
AAGCCTCGCAGAAGTCGCAGATGGCGCCCACCATTCCGAGGCCCGTGGTG
TAGACGCCCGGATGTTTGACCACGCAGTCGCCGGTCTTTAGCATGCACTT
GATTTTCCCGCACTGGGCGCAAATGGGTAATCTCTGAATGCTCTGGCAGA
AATAGC
BO06608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10009-PA | 948 | Noa36-RA | 158..945 | 806..19 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 225..1012 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598185..28598640 | 19..474 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 28598727..28599064 | 469..806 | 1690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:55:35 has no hits.
BO06608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:26 Download gff for
BO06608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-PA | 158..948 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:51 Download gff for
BO06608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10009-PA | 158..948 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:44:53 Download gff for
BO06608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 225..1016 | 14..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:14 Download gff for
BO06608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 225..1016 | 14..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:14 Download gff for
BO06608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598181..28598637 | 14..471 | 99 | <- | Plus |
| 3R | 28598730..28599064 | 472..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:44:53 Download gff for
BO06608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24423903..24424359 | 14..471 | 99 | <- | Plus |
| arm_3R | 24424452..24424786 | 472..806 | 100 | | Plus |
BO06608.5prime Sequence
826 bp (824 high quality bases) assembled on 2005-12-03
> BO06608.5prime
GAAGTTATCAGTCGACATGCCGAAAAAGAAGACTGGGCAGCGTAAGAAGG
CCGAGAAGCAGAAGCTTCGCCTCAAGGAGATCCGCAGCAGAGAGGTGCCT
CTTGCGGATTTGCCCTGCAATGCACCAATGGAGTGCGACAAGTGCGAGAA
GAAGCAGAAGTCGAGAGCCTTCTGCTATTTCTGCCAGAGCATTCAGAGAT
TACCCATTTGCGCCCAGTGCGGGAAAATCAAGTGCATGCTAAAGACCGGC
GACTGCGTGGTCAAACATCCGGGCGTCTACACCACGGGCCTCGGAATGGT
GGGCGCCATCTGCGACTTCTGCGAGGCTTGGGTTTGCCACGGACGCAAGT
GTCTCCAAAACCACGCCTGCACGTGTCCGCTGCAGAATGCGACCTGCCTG
GAGTGCGAACGCGGTGTCTGGGAGCACGGTGGGCGCATCTTCAAGTGCTC
CTTCTGCAACGGATTCCTGTGCGAGGACGATCAGTTCGAGCACCAGGCCA
GCTGTCAGGTGCTGGAGTCGGAGAACTACAAGTGTCAATCGTGCAACAAG
CTGGGTCAATACTCCTGCCTGCGCTGCAAGACCTGTTACTGCGAGGATCA
CGTGCGTCGCAAGGGCTTCAAGTACGACAAGAACAAGCCAATTCCATGCC
CCAAGTGCAACTACGATACCTCGGTGACCAAGGACCTCAGCATGTCCACG
CGGTCGCACAAATTCGGGCGACAGCAACAAGGAGGCAACAGCGACGACGA
GGAGGGATACGGTGGATACTATGGAGCCGGTGGCAGTGGCTATTATGGTG
GCGCCGCCAGTGGGGGCTACTCCTAC
BO06608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10009-PA | 948 | Noa36-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:32:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 68..877 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598727..28599221 | 511..17 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 28598320..28598640 | 826..506 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:32:53 has no hits.
BO06608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:54:27 Download gff for
BO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:28:52 Download gff for
BO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10009-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:13:45 Download gff for
BO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..877 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:09 Download gff for
BO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..877 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:09 Download gff for
BO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598320..28598637 | 509..826 | 100 | <- | Minus |
| 3R | 28598730..28599221 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:13:45 Download gff for
BO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24424042..24424359 | 509..826 | 100 | <- | Minus |
| arm_3R | 24424452..24424943 | 17..508 | 100 | | Minus |
BO06608.complete Sequence
979 bp (979 high quality bases) assembled on 2005-11-29
GenBank Submission: FJ630459
> BO06608.complete
GAAGTTATCAGTCGACATGCCGAAAAAGAAGACTGGGCAGCGTAAGAAGG
CCGAGAAGCAGAAGCTTCGCCTCAAGGAGATCCGCAGCAGAGAGGTGCCT
CTTGCGGATTTGCCCTGCAATGCACCAATGGAGTGCGACAAGTGCGAGAA
GAAGCAGAAGTCGAGAGCCTTCTGCTATTTCTGCCAGAGCATTCAGAGAT
TACCCATTTGCGCCCAGTGCGGGAAAATCAAGTGCATGCTAAAGACCGGC
GACTGCGTGGTCAAACATCCGGGCGTCTACACCACGGGCCTCGGAATGGT
GGGCGCCATCTGCGACTTCTGCGAGGCTTGGGTTTGCCACGGACGCAAGT
GTCTCCAAAACCACGCCTGCACGTGTCCGCTGCAGAATGCGACCTGCCTG
GAGTGCGAACGCGGTGTCTGGGAGCACGGTGGGCGCATCTTCAAGTGCTC
CTTCTGCAACGGATTCCTGTGCGAGGACGATCAGTTCGAGCACCAGGCCA
GCTGTCAGGTGCTGGAGTCGGAGAACTACAAGTGTCAATCGTGCAACAAG
CTGGGTCAATACTCCTGCCTGCGCTGCAAGACCTGTTACTGCGAGGATCA
CGTGCGTCGCAAGGGCTTCAAGTACGACAAGAACAAGCCAATTCCATGCC
CCAAGTGCAACTACGATACCTCGGTGACCAAGGACCTCAGCATGTCCACG
CGGTCGCACAAATTCGGGCGACAGCAACAAGGAGGCAACAGCGACGACGA
GGAGGGATACGGTGGATACTATGGAGCCGGTGGCAGTGGCTATTATGGTG
GCGCCGCCAGTGGGGGCTACTCCTACGGGGGTGATGACGATGAAGATGAG
TCCGATGGAGACTACGATGATGAAAGCGATGAAGACGATGATGATGATGA
GGAAGAGGACGAGACCACAGAAAGTGAACCGGAGAAGGAAACCGACAAAA
AGGCCACCAAAGCAAGCTTTCTAGACCAT
BO06608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 948 | CG10009-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 68..1012 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598727..28599221 | 511..17 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 28598185..28598640 | 961..506 | 2280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:45:36 has no hits.
BO06608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:16 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:45:54 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 59..1007 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:43 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1012 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:16 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 59..1007 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:55 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1012 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:55 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598183..28598637 | 509..963 | 99 | <- | Minus |
| 3R | 28598730..28599221 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:43 Download gff for
BO06608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24423905..24424359 | 509..963 | 99 | <- | Minus |
| arm_3R | 24424452..24424943 | 17..508 | 100 | | Minus |
BO06608.pep Sequence
Translation from 16 to 979
> BO06608.pep
MPKKKTGQRKKAEKQKLRLKEIRSREVPLADLPCNAPMECDKCEKKQKSR
AFCYFCQSIQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICD
FCEAWVCHGRKCLQNHACTCPLQNATCLECERGVWEHGGRIFKCSFCNGF
LCEDDQFEHQASCQVLESENYKCQSCNKLGQYSCLRCKTCYCEDHVRRKG
FKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQQGGNSDDEEGYGG
YYGAGGSGYYGGAASGGYSYGGDDDEDESDGDYDDESDEDDDDDEEEDET
TESEPEKETDKKATKASFLDH
BO06608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-PA | 315 | CG10009-PA | 1..315 | 1..315 | 1788 | 100 | Plus |
